Wall clock time and date at job start Tue Mar 31 2020 18:22:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 N 1.46902 * 109.46745 * 2 1 4 4 C 1.46894 * 110.99889 * 72.14268 * 3 2 1 5 5 C 1.46902 * 110.99731 * 196.09352 * 3 2 1 6 6 H 1.09004 * 109.47117 * 293.68666 * 5 3 2 7 7 C 1.50694 * 109.47038 * 173.68873 * 5 3 2 8 8 O 1.21286 * 119.99989 * 328.81551 * 7 5 3 9 9 N 1.34781 * 120.00314 * 148.81483 * 7 5 3 10 10 C 1.46505 * 119.99637 * 354.75241 * 9 7 5 11 11 C 1.46492 * 120.00312 * 174.75371 * 9 7 5 12 12 C 1.53001 * 109.47416 * 89.99955 * 11 9 7 13 13 H 1.09000 * 109.47131 * 295.00647 * 12 11 9 14 14 C 1.52996 * 109.47656 * 175.00252 * 12 11 9 15 15 N 1.46498 * 109.46932 * 54.99939 * 12 11 9 16 16 C 1.36938 * 120.00359 * 205.00357 * 15 12 11 17 17 H 1.08002 * 119.99879 * 359.97438 * 16 15 12 18 18 C 1.38809 * 120.00368 * 180.02562 * 16 15 12 19 19 N 1.31616 * 120.00131 * 359.97438 * 18 16 15 20 20 Si 1.86810 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48498 * 109.46734 * 89.99586 * 20 18 16 22 22 H 1.48490 * 109.46855 * 209.99774 * 20 18 16 23 23 H 1.48494 * 109.46789 * 329.99892 * 20 18 16 24 24 C 1.50700 * 109.47201 * 53.68494 * 5 3 2 25 25 C 1.38239 * 119.99851 * 225.65865 * 24 5 3 26 26 C 1.38235 * 119.99592 * 179.81215 * 25 24 5 27 27 C 1.38232 * 119.99998 * 0.40108 * 26 25 24 28 28 C 1.38236 * 120.00246 * 359.85277 * 27 26 25 29 29 C 1.38230 * 119.99705 * 45.93765 * 24 5 3 30 30 H 1.09000 * 109.46842 * 183.50965 * 1 2 3 31 31 H 1.09000 * 109.47164 * 303.51041 * 1 2 3 32 32 H 1.08995 * 109.46938 * 63.51472 * 1 2 3 33 33 H 1.09006 * 109.46878 * 240.00576 * 2 1 3 34 34 H 1.08994 * 109.47520 * 120.00440 * 2 1 3 35 35 H 1.09003 * 109.47573 * 179.97438 * 4 3 2 36 36 H 1.09002 * 109.46945 * 299.99424 * 4 3 2 37 37 H 1.09001 * 109.47731 * 59.99321 * 4 3 2 38 38 H 1.08993 * 109.47314 * 275.20945 * 10 9 7 39 39 H 1.09001 * 109.47068 * 35.21020 * 10 9 7 40 40 H 1.09001 * 109.46919 * 155.20824 * 10 9 7 41 41 H 1.08996 * 109.47225 * 330.00083 * 11 9 7 42 42 H 1.08996 * 109.47488 * 209.99779 * 11 9 7 43 43 H 1.09002 * 109.47284 * 59.99386 * 14 12 11 44 44 H 1.08994 * 109.47289 * 180.02562 * 14 12 11 45 45 H 1.09010 * 109.46673 * 300.00223 * 14 12 11 46 46 H 0.97001 * 120.00590 * 25.00116 * 15 12 11 47 47 H 0.96996 * 120.00357 * 180.02562 * 19 18 16 48 48 H 1.07993 * 120.00219 * 0.02562 * 25 24 5 49 49 H 1.08005 * 119.99819 * 180.23089 * 26 25 24 50 50 H 1.08001 * 120.00183 * 179.83887 * 27 26 25 51 51 H 1.07998 * 119.99922 * 179.97438 * 28 27 26 52 52 H 1.07998 * 120.00481 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7986 2.0215 1.3053 5 6 3.4375 1.4422 -0.3802 6 1 4.0397 0.9586 0.3890 7 6 3.8624 2.8812 -0.5200 8 8 3.0627 3.7170 -0.8844 9 7 5.1312 3.2395 -0.2401 10 6 6.0662 2.2544 0.3093 11 6 5.5754 4.6138 -0.4851 12 6 5.3314 5.4595 0.7664 13 1 4.2599 5.5316 0.9530 14 6 5.9078 6.8609 0.5553 15 7 5.9860 4.8303 1.9161 16 6 5.5230 5.0686 3.1826 17 1 4.6756 5.7208 3.3339 18 6 6.1435 4.4729 4.2720 19 7 7.1766 3.6785 4.0877 20 14 5.5124 4.7987 5.9998 21 1 4.4821 3.7879 6.3491 22 1 6.6390 4.7105 6.9631 23 1 4.9143 6.1565 6.0604 24 6 3.6344 0.7303 -1.6938 25 6 4.6845 -0.1552 -1.8493 26 6 4.8628 -0.8112 -3.0530 27 6 3.9960 -0.5753 -4.1037 28 6 2.9491 0.3141 -3.9498 29 6 2.7685 0.9671 -2.7448 30 1 -0.3633 -1.0258 0.0629 31 1 -0.3633 0.5674 0.8568 32 1 -0.3633 0.4583 -0.9198 33 1 1.8934 -0.5138 -0.8901 34 1 1.8934 -0.5139 0.8899 35 1 2.1705 3.0457 1.2779 36 1 0.7321 2.0278 1.5305 37 1 2.3293 1.4631 2.0765 38 1 5.9483 2.2058 1.3918 39 1 5.8585 1.2757 -0.1231 40 1 7.0876 2.5489 0.0680 41 1 5.0159 5.0327 -1.3214 42 1 6.6391 4.6150 -0.7226 43 1 5.4208 7.3290 -0.3002 44 1 5.7344 7.4632 1.4470 45 1 6.9794 6.7887 0.3687 46 1 6.7473 4.2448 1.7803 47 1 7.6100 3.2619 4.8489 48 1 5.3634 -0.3372 -1.0295 49 1 5.6810 -1.5058 -3.1734 50 1 4.1369 -1.0858 -5.0450 51 1 2.2722 0.4987 -4.7708 52 1 1.9505 1.6620 -2.6246 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001331617483.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:22:32 Heat of formation + Delta-G solvation = 19.774485 kcal Electronic energy + Delta-G solvation = -30750.206213 eV Core-core repulsion = 26943.587633 eV Total energy + Delta-G solvation = -3806.618580 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -40.49923 -38.76851 -37.19777 -36.01587 -34.22039 -32.49512 -31.82077 -30.93646 -30.46480 -28.84681 -27.36821 -26.74545 -25.79392 -24.40995 -23.48222 -22.63910 -21.98001 -20.87513 -19.95093 -18.63885 -17.33453 -17.09987 -16.72065 -16.20465 -15.69509 -15.31123 -14.87447 -14.72469 -14.54056 -14.44725 -14.07347 -13.63816 -13.47322 -13.38741 -13.14000 -12.84574 -12.70281 -12.51952 -12.21695 -12.18116 -12.15626 -12.04400 -11.83024 -11.78975 -11.42351 -11.35945 -11.23141 -11.10796 -10.95095 -10.85843 -10.75329 -10.68153 -10.33147 -10.06283 -9.64845 -9.56994 -8.95600 -8.93129 -8.65705 -8.23607 -8.06575 -6.93433 -5.78017 -3.04269 1.21861 1.36927 2.98379 3.31181 3.41751 3.48181 3.49252 3.69525 4.08636 4.59214 4.64869 4.80963 4.90046 4.93463 5.04499 5.10241 5.17685 5.30500 5.39960 5.46784 5.51876 5.54791 5.58060 5.58501 5.63877 5.71328 5.73522 5.82829 5.83243 5.89737 5.94571 5.96512 6.03226 6.13153 6.15540 6.30143 6.32460 6.36735 6.37778 6.43776 6.47049 6.55476 6.65677 6.85162 6.89139 6.92361 7.03668 7.10968 7.20315 7.71495 7.83983 8.41541 8.62794 9.53055 10.10082 10.46450 11.44880 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.012496 B = 0.003878 C = 0.003509 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2240.178304 B = 7218.043833 C = 7977.547358 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.047 3.953 3 N -0.515 5.515 4 C 0.022 3.978 5 C 0.108 3.892 6 H 0.069 0.931 7 C 0.528 3.472 8 O -0.526 6.526 9 N -0.594 5.594 10 C 0.077 3.923 11 C 0.114 3.886 12 C 0.155 3.845 13 H 0.052 0.948 14 C -0.162 4.162 15 N -0.719 5.719 16 C -0.228 4.228 17 H 0.067 0.933 18 C -0.014 4.014 19 N -0.936 5.936 20 Si 0.902 3.098 21 H -0.292 1.292 22 H -0.292 1.292 23 H -0.283 1.283 24 C -0.075 4.075 25 C -0.112 4.112 26 C -0.123 4.123 27 C -0.119 4.119 28 C -0.126 4.126 29 C -0.081 4.081 30 H 0.055 0.945 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.077 0.923 34 H 0.033 0.967 35 H 0.078 0.922 36 H 0.072 0.928 37 H 0.028 0.972 38 H 0.079 0.921 39 H 0.055 0.945 40 H 0.071 0.929 41 H 0.077 0.923 42 H 0.070 0.930 43 H 0.037 0.963 44 H 0.055 0.945 45 H 0.045 0.955 46 H 0.381 0.619 47 H 0.253 0.747 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.400 -10.570 -14.651 19.166 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.081 4.081 3 N -0.240 5.240 4 C -0.126 4.126 5 C -0.004 4.004 6 H 0.086 0.914 7 C 0.314 3.686 8 O -0.402 6.402 9 N -0.326 5.326 10 C -0.066 4.066 11 C -0.010 4.010 12 C 0.044 3.956 13 H 0.070 0.930 14 C -0.223 4.223 15 N -0.361 5.361 16 C -0.359 4.359 17 H 0.085 0.915 18 C -0.209 4.209 19 N -0.585 5.585 20 Si 0.733 3.267 21 H -0.219 1.219 22 H -0.219 1.219 23 H -0.209 1.209 24 C -0.076 4.076 25 C -0.131 4.131 26 C -0.141 4.141 27 C -0.137 4.137 28 C -0.144 4.144 29 C -0.099 4.099 30 H 0.074 0.926 31 H 0.074 0.926 32 H 0.080 0.920 33 H 0.095 0.905 34 H 0.051 0.949 35 H 0.097 0.903 36 H 0.090 0.910 37 H 0.047 0.953 38 H 0.098 0.902 39 H 0.074 0.926 40 H 0.089 0.911 41 H 0.096 0.904 42 H 0.089 0.911 43 H 0.057 0.943 44 H 0.074 0.926 45 H 0.065 0.935 46 H 0.215 0.785 47 H 0.063 0.937 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.152 0.848 Dipole moment (debyes) X Y Z Total from point charges -7.178 -9.794 -15.024 19.317 hybrid contribution 0.659 -0.469 1.810 1.983 sum -6.519 -10.263 -13.213 17.956 Atomic orbital electron populations 1.21734 0.94698 1.01049 1.02626 1.22176 0.96295 0.88601 1.01013 1.61776 1.14655 1.17142 1.30408 1.22469 1.01862 1.00483 0.87772 1.20532 0.90895 0.93920 0.95048 0.91381 1.19939 0.81786 0.89328 0.77558 1.90652 1.50907 1.51942 1.46661 1.47551 1.10754 1.11276 1.63041 1.21973 0.93207 0.90687 1.00774 1.21843 0.99220 0.81254 0.98639 1.20643 0.96875 0.90672 0.87382 0.93029 1.22368 1.00342 0.99315 1.00235 1.42380 1.36798 1.55958 1.00995 1.19234 1.10479 1.22578 0.83649 0.91461 1.24638 0.98399 1.00345 0.97521 1.69630 1.23778 1.35525 1.29588 0.86260 0.77584 0.77745 0.85084 1.21926 1.21884 1.20872 1.19404 0.96321 0.97369 0.94515 1.21104 0.97349 0.96543 0.98082 1.21054 0.99646 1.00206 0.93231 1.21160 0.95398 0.98476 0.98714 1.21184 0.98339 0.97382 0.97529 1.21156 0.98821 0.98202 0.91731 0.92600 0.92557 0.91972 0.90471 0.94856 0.90334 0.90977 0.95337 0.90231 0.92615 0.91066 0.90426 0.91115 0.94346 0.92626 0.93547 0.78450 0.93700 0.85905 0.86044 0.86310 0.86117 0.84781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.49 10.02 37.16 0.37 -1.12 16 2 C 0.05 0.56 5.35 -3.82 -0.02 0.54 16 3 N -0.52 -7.49 3.83 -237.69 -0.91 -8.40 16 4 C 0.02 0.34 9.11 60.06 0.55 0.89 16 5 C 0.11 1.60 1.37 -70.02 -0.10 1.51 16 6 H 0.07 1.02 6.24 -51.93 -0.32 0.69 16 7 C 0.53 9.37 5.57 -10.99 -0.06 9.31 16 8 O -0.53 -10.79 15.65 5.55 0.09 -10.70 16 9 N -0.59 -10.24 2.73 -181.58 -0.50 -10.74 16 10 C 0.08 1.21 8.43 59.85 0.50 1.71 16 11 C 0.11 1.98 5.03 -4.05 -0.02 1.96 16 12 C 0.16 3.16 3.20 -67.93 -0.22 2.95 16 13 H 0.05 1.18 8.08 -51.93 -0.42 0.76 16 14 C -0.16 -2.98 9.49 37.16 0.35 -2.63 16 15 N -0.72 -17.23 4.47 -53.43 -0.24 -17.47 16 16 C -0.23 -6.18 9.93 -15.06 -0.15 -6.33 16 17 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 18 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 19 N -0.94 -26.87 13.06 55.49 0.72 -26.14 16 20 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 21 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 22 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 23 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 24 C -0.08 -0.98 3.27 -104.62 -0.34 -1.33 16 25 C -0.11 -1.28 8.99 -39.58 -0.36 -1.64 16 26 C -0.12 -1.23 10.05 -39.58 -0.40 -1.63 16 27 C -0.12 -1.16 10.05 -39.58 -0.40 -1.56 16 28 C -0.13 -1.35 10.05 -39.58 -0.40 -1.75 16 29 C -0.08 -1.04 8.44 -39.58 -0.33 -1.37 16 30 H 0.06 0.49 8.14 -51.93 -0.42 0.06 16 31 H 0.06 0.60 6.65 -51.93 -0.35 0.25 16 32 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 33 H 0.08 0.91 5.89 -51.93 -0.31 0.61 16 34 H 0.03 0.40 8.03 -51.93 -0.42 -0.02 16 35 H 0.08 1.46 6.60 -51.93 -0.34 1.12 16 36 H 0.07 0.99 6.65 -51.93 -0.35 0.64 16 37 H 0.03 0.44 8.11 -51.93 -0.42 0.02 16 38 H 0.08 1.52 7.72 -51.93 -0.40 1.12 16 39 H 0.06 0.73 4.34 -51.93 -0.23 0.50 16 40 H 0.07 1.05 7.83 -51.93 -0.41 0.64 16 41 H 0.08 1.33 7.50 -51.93 -0.39 0.94 16 42 H 0.07 1.12 7.86 -51.93 -0.41 0.71 16 43 H 0.04 0.61 8.14 -51.93 -0.42 0.19 16 44 H 0.05 1.10 8.14 -51.93 -0.42 0.68 16 45 H 0.05 0.82 8.14 -51.92 -0.42 0.40 16 46 H 0.38 9.42 6.38 -40.82 -0.26 9.16 16 47 H 0.25 7.13 8.31 -40.82 -0.34 6.79 16 48 H 0.12 1.26 6.62 -52.49 -0.35 0.91 16 49 H 0.12 0.95 8.06 -52.48 -0.42 0.52 16 50 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 51 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 52 H 0.13 1.90 7.90 -52.49 -0.41 1.48 16 LS Contribution 407.86 15.07 6.15 6.15 Total: -1.00 -30.76 407.86 -9.52 -40.28 By element: Atomic # 1 Polarization: 19.50 SS G_CDS: -8.70 Total: 10.80 kcal Atomic # 6 Polarization: 0.16 SS G_CDS: -1.11 Total: -0.95 kcal Atomic # 7 Polarization: -61.83 SS G_CDS: -0.92 Total: -62.75 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -30.76 -9.52 -40.28 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001331617483.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 60.059 kcal (2) G-P(sol) polarization free energy of solvation -30.763 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.296 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.522 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.285 kcal (6) G-S(sol) free energy of system = (1) + (5) 19.774 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds