Wall clock time and date at job start Tue Mar 31 2020 17:30:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 N 1.46495 * 109.47535 * 120.00456 * 2 1 3 5 5 C 1.46501 * 119.99814 * 299.99964 * 4 2 1 6 6 C 1.52995 * 109.47170 * 269.99651 * 5 4 2 7 7 N 1.46501 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99814 * 90.00348 * 7 6 5 9 9 C 1.36939 * 119.99892 * 269.99868 * 7 6 5 10 10 H 1.08001 * 120.00281 * 23.05243 * 9 7 6 11 11 C 1.38811 * 119.99880 * 203.04657 * 9 7 6 12 12 N 1.31619 * 120.00045 * 12.92877 * 11 9 7 13 13 Si 1.86804 * 119.99888 * 192.93083 * 11 9 7 14 14 H 1.48493 * 109.47206 * 90.00162 * 13 11 9 15 15 H 1.48505 * 109.46807 * 210.00409 * 13 11 9 16 16 H 1.48507 * 109.46939 * 329.99802 * 13 11 9 17 17 C 1.34776 * 120.00316 * 119.99832 * 4 2 1 18 18 O 1.21283 * 120.00255 * 179.72852 * 17 4 2 19 19 C 1.50704 * 119.99741 * 0.02562 * 17 4 2 20 20 C 1.52998 * 109.47082 * 179.72601 * 19 17 4 21 21 H 1.09001 * 109.46988 * 304.99909 * 20 19 17 22 22 C 1.53001 * 109.47154 * 65.00066 * 20 19 17 23 23 C 1.50700 * 109.47223 * 185.00167 * 20 19 17 24 24 C 1.38645 * 120.78787 * 299.71843 * 23 20 19 25 25 C 1.38203 * 119.16178 * 179.75378 * 24 23 20 26 26 N 1.31867 * 120.76368 * 0.53216 * 25 24 23 27 27 C 1.31873 * 121.72822 * 359.74259 * 26 25 24 28 28 C 1.38202 * 120.75887 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46936 * 299.99714 * 1 2 3 30 30 H 1.08997 * 109.47737 * 59.99668 * 1 2 3 31 31 H 1.08997 * 109.47426 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46639 * 240.00716 * 2 1 3 33 33 H 1.09009 * 109.46676 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47118 * 300.00230 * 3 2 1 35 35 H 1.09003 * 109.46869 * 60.00857 * 3 2 1 36 36 H 1.09000 * 109.47081 * 29.99606 * 5 4 2 37 37 H 1.08997 * 109.47251 * 149.99891 * 5 4 2 38 38 H 1.08994 * 109.47716 * 300.00190 * 6 5 4 39 39 H 1.09008 * 109.47152 * 60.00338 * 6 5 4 40 40 H 1.09002 * 109.47182 * 95.12485 * 8 7 6 41 41 H 1.09002 * 109.46750 * 215.11962 * 8 7 6 42 42 H 1.08998 * 109.47080 * 335.12038 * 8 7 6 43 43 H 0.97007 * 119.99901 * 179.97438 * 12 11 9 44 44 H 1.09005 * 109.47231 * 299.72736 * 19 17 4 45 45 H 1.09001 * 109.46679 * 59.72416 * 19 17 4 46 46 H 1.08993 * 109.47035 * 59.99899 * 22 20 19 47 47 H 1.08997 * 109.46783 * 180.02562 * 22 20 19 48 48 H 1.09003 * 109.47170 * 299.99854 * 22 20 19 49 49 H 1.08003 * 120.41798 * 0.02562 * 24 23 20 50 50 H 1.08002 * 119.61764 * 180.25181 * 25 24 23 51 51 H 1.07996 * 119.61720 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.41773 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1902 2.5267 6 6 2.7191 0.8168 2.9899 7 7 2.3649 1.3177 4.3203 8 6 2.8529 0.6273 5.5167 9 6 1.5778 2.4312 4.4454 10 1 0.9230 2.7232 3.6377 11 6 1.6214 3.1846 5.6105 12 7 2.5860 2.9897 6.4845 13 14 0.3111 4.4751 5.9378 14 1 -0.8197 3.8565 6.6752 15 1 0.8908 5.5738 6.7516 16 1 -0.1793 5.0212 4.6468 17 6 2.7932 -1.7865 1.0723 18 8 3.2017 -2.3554 2.0625 19 6 3.1577 -2.3009 -0.2965 20 6 4.0429 -3.5409 -0.1563 21 1 4.9077 -3.3019 0.4627 22 6 3.2420 -4.6677 0.4996 23 6 4.5079 -3.9830 -1.5198 24 6 3.5949 -4.3503 -2.4965 25 6 4.0582 -4.7454 -3.7371 26 7 5.3512 -4.7853 -3.9928 27 6 6.2481 -4.4485 -3.0866 28 6 5.8591 -4.0377 -1.8257 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 0.6905 0.2973 2.4843 37 1 1.6239 -1.0227 3.2290 38 1 3.6931 0.3294 3.0323 39 1 2.7597 1.6494 2.2876 40 1 3.7664 1.1082 5.8665 41 1 2.0948 0.6754 6.2984 42 1 3.0604 -0.4152 5.2754 43 1 2.6167 3.5165 7.2985 44 1 2.2497 -2.5622 -0.8401 45 1 3.6986 -1.5282 -0.8428 46 1 2.3773 -4.9066 -0.1193 47 1 3.8728 -5.5509 0.5999 48 1 2.9057 -4.3479 1.4859 49 1 2.5347 -4.3236 -2.2917 50 1 3.3533 -5.0291 -4.5046 51 1 7.2987 -4.4943 -3.3327 52 1 6.5983 -3.7627 -1.0879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001332711233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:27 Heat of formation + Delta-G solvation = 14.676795 kcal Electronic energy + Delta-G solvation = -29416.189809 eV Core-core repulsion = 25609.350176 eV Total energy + Delta-G solvation = -3806.839633 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -40.71180 -39.91024 -37.09500 -35.70404 -35.37392 -32.08349 -31.55764 -31.26188 -30.97119 -29.05400 -27.43552 -27.00177 -25.78095 -24.61036 -23.72008 -23.29197 -21.90095 -20.89025 -20.33708 -18.45041 -17.73316 -16.71938 -16.58013 -16.42428 -15.83786 -15.69849 -15.45738 -14.77242 -14.37159 -14.22301 -14.11558 -13.97429 -13.74240 -13.63390 -13.30978 -13.08690 -13.05669 -12.68756 -12.63978 -12.21104 -12.11019 -12.09423 -11.85242 -11.67838 -11.48575 -11.38189 -11.11170 -11.04284 -10.87979 -10.82297 -10.72724 -10.48363 -10.13065 -9.89938 -9.82435 -9.72522 -9.68846 -9.46614 -9.42285 -8.67384 -8.37163 -6.69890 -5.70009 -3.17950 0.86088 0.97686 2.79049 3.14490 3.37490 3.43286 3.44973 3.54886 4.17801 4.22202 4.39398 4.50951 4.68310 4.70368 4.81788 4.84648 4.85586 4.89325 5.05761 5.15945 5.18156 5.35357 5.41351 5.43900 5.47739 5.53211 5.59065 5.61807 5.67609 5.73046 5.78840 5.80269 5.82445 5.88525 5.91416 6.08346 6.17961 6.22972 6.26460 6.30069 6.39806 6.43431 6.60126 6.76728 6.90802 7.01683 7.43500 7.65915 7.69942 7.76622 7.82623 8.37487 8.43433 9.25348 9.89274 10.39506 11.34217 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002453 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.336407 B =11413.950628 C =11970.947967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.129 3.871 3 C -0.169 4.169 4 N -0.601 5.601 5 C 0.093 3.907 6 C 0.139 3.861 7 N -0.600 5.600 8 C 0.162 3.838 9 C -0.255 4.255 10 H 0.067 0.933 11 C 0.002 3.998 12 N -0.905 5.905 13 Si 0.904 3.096 14 H -0.288 1.288 15 H -0.291 1.291 16 H -0.280 1.280 17 C 0.510 3.490 18 O -0.535 6.535 19 C -0.132 4.132 20 C -0.039 4.039 21 H 0.092 0.908 22 C -0.148 4.148 23 C -0.028 4.028 24 C -0.169 4.169 25 C 0.097 3.903 26 N -0.493 5.493 27 C 0.099 3.901 28 C -0.169 4.169 29 H 0.067 0.933 30 H 0.065 0.935 31 H 0.056 0.944 32 H 0.085 0.915 33 H 0.059 0.941 34 H 0.062 0.938 35 H 0.076 0.924 36 H 0.073 0.927 37 H 0.074 0.926 38 H 0.035 0.965 39 H 0.052 0.948 40 H 0.030 0.970 41 H 0.039 0.961 42 H 0.001 0.999 43 H 0.252 0.748 44 H 0.091 0.909 45 H 0.092 0.908 46 H 0.050 0.950 47 H 0.053 0.947 48 H 0.085 0.915 49 H 0.133 0.867 50 H 0.154 0.846 51 H 0.154 0.846 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.779 -13.254 -20.222 24.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.026 3.974 3 C -0.227 4.227 4 N -0.334 5.334 5 C -0.032 4.032 6 C 0.011 3.989 7 N -0.323 5.323 8 C 0.017 3.983 9 C -0.385 4.385 10 H 0.084 0.916 11 C -0.197 4.197 12 N -0.550 5.550 13 Si 0.734 3.266 14 H -0.215 1.215 15 H -0.218 1.218 16 H -0.205 1.205 17 C 0.298 3.702 18 O -0.413 6.413 19 C -0.173 4.173 20 C -0.057 4.057 21 H 0.110 0.890 22 C -0.205 4.205 23 C -0.036 4.036 24 C -0.189 4.189 25 C -0.059 4.059 26 N -0.202 5.202 27 C -0.058 4.058 28 C -0.189 4.189 29 H 0.086 0.914 30 H 0.084 0.916 31 H 0.075 0.925 32 H 0.103 0.897 33 H 0.078 0.922 34 H 0.081 0.919 35 H 0.095 0.905 36 H 0.092 0.908 37 H 0.092 0.908 38 H 0.054 0.946 39 H 0.070 0.930 40 H 0.048 0.952 41 H 0.058 0.942 42 H 0.019 0.981 43 H 0.062 0.938 44 H 0.110 0.890 45 H 0.110 0.890 46 H 0.069 0.931 47 H 0.072 0.928 48 H 0.104 0.896 49 H 0.151 0.849 50 H 0.171 0.829 51 H 0.172 0.828 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges 1.314 -13.719 -20.323 24.555 hybrid contribution -1.044 1.137 1.048 1.866 sum 0.270 -12.582 -19.275 23.019 Atomic orbital electron populations 1.22174 0.94946 1.02203 1.02940 1.21156 0.94580 0.94005 0.87708 1.22328 1.01700 0.95503 1.03158 1.48213 1.50213 1.27339 1.07668 1.22459 1.00548 0.98936 0.81220 1.21172 0.94548 0.94901 0.88325 1.43848 1.59305 1.29686 0.99449 1.20797 0.98885 0.90272 0.88312 1.19144 1.15474 1.02017 1.01863 0.91565 1.25037 0.97732 0.98219 0.98690 1.70085 1.31095 1.42438 1.11409 0.86274 0.81335 0.81122 0.77894 1.21524 1.21766 1.20534 1.20450 0.78494 0.80197 0.91068 1.90681 1.53127 1.57648 1.39807 1.21764 1.01156 0.98292 0.96046 1.19954 0.99521 0.94665 0.91600 0.88975 1.21955 0.99135 0.96975 1.02472 1.20398 0.93349 0.94226 0.95647 1.22023 1.00944 1.01479 0.94412 1.22745 0.92271 0.95371 0.95539 1.67671 1.02703 1.14655 1.35144 1.22761 0.99399 0.94303 0.89340 1.22145 0.96232 1.01902 0.98611 0.91404 0.91597 0.92534 0.89669 0.92216 0.91883 0.90507 0.90825 0.90757 0.94648 0.92971 0.95162 0.94197 0.98082 0.93761 0.89027 0.88980 0.93123 0.92790 0.89617 0.84880 0.82902 0.82829 0.84671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.63 9.17 37.16 0.34 -1.29 16 2 C 0.13 1.38 3.17 -67.93 -0.22 1.17 16 3 C -0.17 -1.93 8.14 37.16 0.30 -1.62 16 4 N -0.60 -8.40 2.40 -166.11 -0.40 -8.79 16 5 C 0.09 1.65 5.15 -4.04 -0.02 1.63 16 6 C 0.14 2.92 5.69 -4.04 -0.02 2.89 16 7 N -0.60 -15.33 2.92 -181.12 -0.53 -15.85 16 8 C 0.16 4.19 8.98 59.84 0.54 4.72 16 9 C -0.26 -6.94 9.65 -15.06 -0.15 -7.09 16 10 H 0.07 1.73 7.86 -52.49 -0.41 1.32 16 11 C 0.00 0.05 5.10 -17.43 -0.09 -0.04 16 12 N -0.91 -26.73 10.71 55.49 0.59 -26.13 16 13 Si 0.90 21.73 29.57 -169.99 -5.03 16.71 16 14 H -0.29 -6.93 7.11 56.52 0.40 -6.53 16 15 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 16 H -0.28 -6.51 7.11 56.52 0.40 -6.10 16 17 C 0.51 7.15 7.39 -10.98 -0.08 7.07 16 18 O -0.54 -9.49 13.55 5.55 0.08 -9.42 16 19 C -0.13 -1.29 3.24 -27.88 -0.09 -1.38 16 20 C -0.04 -0.38 2.24 -91.77 -0.21 -0.58 16 21 H 0.09 1.03 7.76 -51.93 -0.40 0.62 16 22 C -0.15 -1.52 8.75 37.16 0.33 -1.19 16 23 C -0.03 -0.25 4.80 -104.32 -0.50 -0.75 16 24 C -0.17 -1.34 8.89 -39.44 -0.35 -1.69 16 25 C 0.10 0.81 11.18 -17.55 -0.20 0.62 16 26 N -0.49 -4.96 10.36 -13.25 -0.14 -5.10 16 27 C 0.10 0.86 11.18 -17.55 -0.20 0.66 16 28 C -0.17 -1.44 9.76 -39.44 -0.39 -1.83 16 29 H 0.07 0.80 6.66 -51.93 -0.35 0.45 16 30 H 0.07 0.53 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.53 8.14 -51.93 -0.42 0.11 16 32 H 0.09 0.71 5.77 -51.93 -0.30 0.41 16 33 H 0.06 0.70 8.14 -51.92 -0.42 0.28 16 34 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 35 H 0.08 1.08 6.17 -51.93 -0.32 0.76 16 36 H 0.07 1.31 6.43 -51.93 -0.33 0.98 16 37 H 0.07 1.49 7.42 -51.93 -0.39 1.10 16 38 H 0.04 0.78 8.07 -51.93 -0.42 0.36 16 39 H 0.05 1.06 5.34 -51.92 -0.28 0.79 16 40 H 0.03 0.84 7.34 -51.93 -0.38 0.46 16 41 H 0.04 1.08 7.34 -51.93 -0.38 0.70 16 42 H 0.00 0.01 8.03 -51.93 -0.42 -0.40 16 43 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 44 H 0.09 0.72 7.34 -51.93 -0.38 0.34 16 45 H 0.09 0.81 7.77 -51.93 -0.40 0.41 16 46 H 0.05 0.44 7.46 -51.93 -0.39 0.06 16 47 H 0.05 0.53 8.14 -51.93 -0.42 0.10 16 48 H 0.09 1.10 5.95 -51.93 -0.31 0.79 16 49 H 0.13 0.82 7.35 -52.48 -0.39 0.43 16 50 H 0.15 0.89 8.06 -52.49 -0.42 0.47 16 51 H 0.15 0.96 8.06 -52.49 -0.42 0.54 16 52 H 0.14 0.96 8.01 -52.48 -0.42 0.54 16 LS Contribution 406.55 15.07 6.13 6.13 Total: -1.00 -32.70 406.55 -9.05 -41.75 By element: Atomic # 1 Polarization: 8.17 SS G_CDS: -8.76 Total: -0.59 kcal Atomic # 6 Polarization: 2.29 SS G_CDS: -0.99 Total: 1.30 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.47 Total: -55.87 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.42 kcal Atomic # 14 Polarization: 21.73 SS G_CDS: -5.03 Total: 16.71 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.70 -9.05 -41.75 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332711233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.424 kcal (2) G-P(sol) polarization free energy of solvation -32.700 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.047 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.747 kcal (6) G-S(sol) free energy of system = (1) + (5) 14.677 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds