Wall clock time and date at job start Tue Mar 31 2020 17:30:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 C 1.53005 * 109.46942 * 2 1 4 4 N 1.46495 * 109.47535 * 120.00456 * 2 1 3 5 5 C 1.46501 * 119.99814 * 299.99964 * 4 2 1 6 6 C 1.52995 * 109.47170 * 269.99651 * 5 4 2 7 7 N 1.46501 * 109.47170 * 179.97438 * 6 5 4 8 8 C 1.46495 * 119.99814 * 90.00348 * 7 6 5 9 9 C 1.36939 * 119.99892 * 269.99868 * 7 6 5 10 10 H 1.08001 * 120.00281 * 23.05243 * 9 7 6 11 11 C 1.38811 * 119.99880 * 203.04657 * 9 7 6 12 12 N 1.31619 * 120.00045 * 12.92877 * 11 9 7 13 13 Si 1.86804 * 119.99888 * 192.93083 * 11 9 7 14 14 H 1.48493 * 109.47206 * 90.00162 * 13 11 9 15 15 H 1.48505 * 109.46807 * 210.00409 * 13 11 9 16 16 H 1.48507 * 109.46939 * 329.99802 * 13 11 9 17 17 C 1.34776 * 120.00316 * 119.99832 * 4 2 1 18 18 O 1.21283 * 120.00255 * 179.72852 * 17 4 2 19 19 C 1.50704 * 119.99741 * 0.02562 * 17 4 2 20 20 C 1.52998 * 109.47082 * 179.72601 * 19 17 4 21 21 H 1.09001 * 109.46988 * 304.99909 * 20 19 17 22 22 C 1.53001 * 109.47154 * 65.00066 * 20 19 17 23 23 C 1.50700 * 109.47223 * 185.00167 * 20 19 17 24 24 C 1.38645 * 120.78787 * 299.71843 * 23 20 19 25 25 C 1.38203 * 119.16178 * 179.75378 * 24 23 20 26 26 N 1.31867 * 120.76368 * 0.53216 * 25 24 23 27 27 C 1.31873 * 121.72822 * 359.74259 * 26 25 24 28 28 C 1.38202 * 120.75887 * 359.97438 * 27 26 25 29 29 H 1.09005 * 109.46936 * 299.99714 * 1 2 3 30 30 H 1.08997 * 109.47737 * 59.99668 * 1 2 3 31 31 H 1.08997 * 109.47426 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46639 * 240.00716 * 2 1 3 33 33 H 1.09009 * 109.46676 * 180.02562 * 3 2 1 34 34 H 1.09003 * 109.47118 * 300.00230 * 3 2 1 35 35 H 1.09003 * 109.46869 * 60.00857 * 3 2 1 36 36 H 1.09000 * 109.47081 * 29.99606 * 5 4 2 37 37 H 1.08997 * 109.47251 * 149.99891 * 5 4 2 38 38 H 1.08994 * 109.47716 * 300.00190 * 6 5 4 39 39 H 1.09008 * 109.47152 * 60.00338 * 6 5 4 40 40 H 1.09002 * 109.47182 * 95.12485 * 8 7 6 41 41 H 1.09002 * 109.46750 * 215.11962 * 8 7 6 42 42 H 1.08998 * 109.47080 * 335.12038 * 8 7 6 43 43 H 0.97007 * 119.99901 * 179.97438 * 12 11 9 44 44 H 1.09005 * 109.47231 * 299.72736 * 19 17 4 45 45 H 1.09001 * 109.46679 * 59.72416 * 19 17 4 46 46 H 1.08993 * 109.47035 * 59.99899 * 22 20 19 47 47 H 1.08997 * 109.46783 * 180.02562 * 22 20 19 48 48 H 1.09003 * 109.47170 * 299.99854 * 22 20 19 49 49 H 1.08003 * 120.41798 * 0.02562 * 24 23 20 50 50 H 1.08002 * 119.61764 * 180.25181 * 25 24 23 51 51 H 1.07996 * 119.61720 * 179.97438 * 27 26 25 52 52 H 1.08004 * 120.41773 * 180.02562 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4426 0.0000 4 7 2.0184 -0.6907 1.1960 5 6 1.6645 -0.1902 2.5267 6 6 2.7191 0.8168 2.9899 7 7 2.3649 1.3177 4.3203 8 6 2.8529 0.6273 5.5167 9 6 1.5778 2.4312 4.4454 10 1 0.9230 2.7232 3.6377 11 6 1.6214 3.1846 5.6105 12 7 2.5860 2.9897 6.4845 13 14 0.3111 4.4751 5.9378 14 1 -0.8197 3.8565 6.6752 15 1 0.8908 5.5738 6.7516 16 1 -0.1793 5.0212 4.6468 17 6 2.7932 -1.7865 1.0723 18 8 3.2017 -2.3554 2.0625 19 6 3.1577 -2.3009 -0.2965 20 6 4.0429 -3.5409 -0.1563 21 1 4.9077 -3.3019 0.4627 22 6 3.2420 -4.6677 0.4996 23 6 4.5079 -3.9830 -1.5198 24 6 3.5949 -4.3503 -2.4965 25 6 4.0582 -4.7454 -3.7371 26 7 5.3512 -4.7853 -3.9928 27 6 6.2481 -4.4485 -3.0866 28 6 5.8591 -4.0377 -1.8257 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3634 -1.0276 -0.0005 32 1 1.8932 -0.5137 -0.8901 33 1 3.1300 1.4425 -0.0005 34 1 1.6765 1.9564 -0.8900 35 1 1.6767 1.9563 0.8901 36 1 0.6905 0.2973 2.4843 37 1 1.6239 -1.0227 3.2290 38 1 3.6931 0.3294 3.0323 39 1 2.7597 1.6494 2.2876 40 1 3.7664 1.1082 5.8665 41 1 2.0948 0.6754 6.2984 42 1 3.0604 -0.4152 5.2754 43 1 2.6167 3.5165 7.2985 44 1 2.2497 -2.5622 -0.8401 45 1 3.6986 -1.5282 -0.8428 46 1 2.3773 -4.9066 -0.1193 47 1 3.8728 -5.5509 0.5999 48 1 2.9057 -4.3479 1.4859 49 1 2.5347 -4.3236 -2.2917 50 1 3.3533 -5.0291 -4.5046 51 1 7.2987 -4.4943 -3.3327 52 1 6.5983 -3.7627 -1.0879 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001332711233.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:30:26 Heat of formation + Delta-G solvation = -3.299543 kcal Electronic energy + Delta-G solvation = -29416.969321 eV Core-core repulsion = 25609.350176 eV Total energy + Delta-G solvation = -3807.619145 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.80 seconds Orbital eigenvalues (eV) -41.53490 -40.84184 -38.30473 -37.15890 -36.57067 -33.74846 -32.47670 -32.19992 -31.90109 -30.40201 -28.54638 -27.97668 -27.87768 -25.58027 -24.81625 -24.26149 -22.86874 -22.41949 -21.46207 -19.51638 -18.85639 -18.48882 -17.39453 -17.24634 -17.10094 -16.56697 -16.45308 -16.33249 -15.55616 -15.40826 -15.14468 -14.95863 -14.89011 -14.69632 -14.47424 -14.27689 -14.11387 -13.99161 -13.81476 -13.51179 -13.24783 -13.15584 -12.82962 -12.80856 -12.72121 -12.65952 -12.49558 -12.39600 -12.29141 -12.13433 -12.09561 -11.93268 -11.79571 -11.66879 -11.38318 -10.74706 -10.64812 -10.44246 -10.34409 -10.01778 -9.73939 -8.75997 -7.82663 -5.34187 0.27057 0.33223 1.46267 1.48443 1.56888 1.70027 2.03513 2.51796 2.92518 3.30628 3.38270 3.65730 3.67900 3.74133 3.86223 3.92796 4.04870 4.16161 4.19500 4.23375 4.26616 4.29231 4.36330 4.45231 4.56258 4.64088 4.65524 4.73147 4.74528 4.80417 4.82168 4.83195 4.89941 4.95768 4.96401 5.02639 5.06541 5.10703 5.13380 5.17500 5.25684 5.39848 5.41505 5.48143 5.53548 5.58557 5.64243 5.67407 5.84646 6.30812 6.55990 7.09547 7.11802 7.28345 7.82609 8.30390 9.21004 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021315 B = 0.002453 C = 0.002338 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1313.336407 B =11413.950628 C =11970.947967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.126 3.874 3 C -0.167 4.167 4 N -0.601 5.601 5 C 0.115 3.885 6 C 0.145 3.855 7 N -0.617 5.617 8 C 0.180 3.820 9 C -0.259 4.259 10 H 0.077 0.923 11 C -0.058 4.058 12 N -0.942 5.942 13 Si 0.972 3.028 14 H -0.287 1.287 15 H -0.297 1.297 16 H -0.262 1.262 17 C 0.505 3.495 18 O -0.579 6.579 19 C -0.122 4.122 20 C -0.032 4.032 21 H 0.071 0.929 22 C -0.144 4.144 23 C -0.034 4.034 24 C -0.164 4.164 25 C 0.090 3.910 26 N -0.518 5.518 27 C 0.089 3.911 28 C -0.177 4.177 29 H 0.042 0.958 30 H 0.092 0.908 31 H 0.062 0.938 32 H 0.122 0.878 33 H 0.052 0.948 34 H 0.091 0.909 35 H 0.044 0.956 36 H 0.075 0.925 37 H 0.048 0.952 38 H 0.020 0.980 39 H 0.060 0.940 40 H 0.004 0.996 41 H 0.018 0.982 42 H 0.017 0.983 43 H 0.248 0.752 44 H 0.123 0.877 45 H 0.110 0.890 46 H 0.070 0.930 47 H 0.052 0.948 48 H 0.055 0.945 49 H 0.156 0.844 50 H 0.177 0.823 51 H 0.171 0.829 52 H 0.142 0.858 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.779 -13.386 -23.649 27.186 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.024 3.976 3 C -0.225 4.225 4 N -0.334 5.334 5 C -0.011 4.011 6 C 0.018 3.982 7 N -0.341 5.341 8 C 0.035 3.965 9 C -0.389 4.389 10 H 0.095 0.905 11 C -0.252 4.252 12 N -0.589 5.589 13 Si 0.800 3.200 14 H -0.214 1.214 15 H -0.224 1.224 16 H -0.187 1.187 17 C 0.294 3.706 18 O -0.459 6.459 19 C -0.161 4.161 20 C -0.051 4.051 21 H 0.090 0.910 22 C -0.201 4.201 23 C -0.042 4.042 24 C -0.184 4.184 25 C -0.066 4.066 26 N -0.228 5.228 27 C -0.067 4.067 28 C -0.197 4.197 29 H 0.062 0.938 30 H 0.111 0.889 31 H 0.081 0.919 32 H 0.140 0.860 33 H 0.071 0.929 34 H 0.110 0.890 35 H 0.063 0.937 36 H 0.093 0.907 37 H 0.066 0.934 38 H 0.038 0.962 39 H 0.078 0.922 40 H 0.022 0.978 41 H 0.037 0.963 42 H 0.035 0.965 43 H 0.057 0.943 44 H 0.141 0.859 45 H 0.128 0.872 46 H 0.089 0.911 47 H 0.072 0.928 48 H 0.074 0.926 49 H 0.174 0.826 50 H 0.194 0.806 51 H 0.188 0.812 52 H 0.160 0.840 Dipole moment (debyes) X Y Z Total from point charges -0.257 -13.859 -23.823 27.562 hybrid contribution -0.507 1.119 2.045 2.386 sum -0.764 -12.740 -21.778 25.242 Atomic orbital electron populations 1.22156 0.94010 1.02701 1.03033 1.21480 0.95318 0.93569 0.87220 1.22302 1.01252 0.95981 1.02971 1.48267 1.50350 1.27641 1.07117 1.21789 0.99199 0.96891 0.83174 1.21253 0.94778 0.95647 0.86533 1.44091 1.59429 1.29759 1.00803 1.20482 0.96927 0.90869 0.88260 1.19524 1.15346 1.01955 1.02052 0.90488 1.25897 0.99869 1.00732 0.98735 1.70264 1.33049 1.43799 1.11792 0.85185 0.78433 0.78210 0.78132 1.21387 1.22374 1.18663 1.21280 0.77358 0.79522 0.92398 1.90676 1.54572 1.58907 1.41775 1.21783 1.02643 0.98471 0.93216 1.19809 0.98735 0.94590 0.91979 0.91030 1.21885 0.99924 0.97071 1.01265 1.20317 0.93742 0.95022 0.95160 1.22226 1.01864 1.00490 0.93772 1.23182 0.92143 0.94893 0.96390 1.67697 1.03712 1.15456 1.35926 1.23060 1.00230 0.94132 0.89241 1.22295 0.96573 1.01924 0.98864 0.93838 0.88946 0.91852 0.86029 0.92905 0.88997 0.93691 0.90673 0.93387 0.96170 0.92201 0.97780 0.96298 0.96490 0.94312 0.85878 0.87198 0.91126 0.92838 0.92612 0.82609 0.80618 0.81214 0.84002 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.67 9.17 71.98 0.66 -2.01 16 2 C 0.13 2.30 3.17 44.99 0.14 2.45 16 3 C -0.17 -3.41 8.14 71.98 0.59 -2.82 16 4 N -0.60 -16.05 2.40 -797.84 -1.91 -17.96 16 5 C 0.12 4.13 5.15 86.38 0.44 4.58 16 6 C 0.14 6.20 5.69 86.38 0.49 6.69 16 7 N -0.62 -32.33 2.92 -726.95 -2.12 -34.45 16 8 C 0.18 9.69 8.98 127.77 1.15 10.84 16 9 C -0.26 -14.21 9.65 84.03 0.81 -13.39 16 10 H 0.08 3.98 7.86 -2.91 -0.02 3.96 16 11 C -0.06 -3.26 5.10 84.86 0.43 -2.83 16 12 N -0.94 -57.23 10.71 21.65 0.23 -57.00 16 13 Si 0.97 44.97 29.57 68.60 2.03 47.00 16 14 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 15 H -0.30 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.26 -11.26 7.11 99.48 0.71 -10.55 16 17 C 0.50 13.60 7.39 87.66 0.65 14.25 16 18 O -0.58 -20.97 13.55 -3.04 -0.04 -21.01 16 19 C -0.12 -2.01 3.24 29.85 0.10 -1.91 16 20 C -0.03 -0.58 2.24 -11.54 -0.03 -0.61 16 21 H 0.07 1.59 7.76 -2.39 -0.02 1.57 16 22 C -0.14 -2.79 8.75 71.98 0.63 -2.16 16 23 C -0.03 -0.53 4.80 -19.67 -0.09 -0.62 16 24 C -0.16 -2.03 8.89 22.36 0.20 -1.83 16 25 C 0.09 1.24 11.18 84.68 0.95 2.19 16 26 N -0.52 -9.39 10.36 -195.85 -2.03 -11.42 16 27 C 0.09 1.42 11.18 84.68 0.95 2.36 16 28 C -0.18 -2.75 9.76 22.36 0.22 -2.53 16 29 H 0.04 0.94 6.66 -2.38 -0.02 0.92 16 30 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 31 H 0.06 0.98 8.14 -2.39 -0.02 0.96 16 32 H 0.12 1.40 5.77 -2.39 -0.01 1.39 16 33 H 0.05 1.14 8.14 -2.38 -0.02 1.12 16 34 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.04 1.21 6.17 -2.39 -0.01 1.20 16 36 H 0.07 2.68 6.43 -2.39 -0.02 2.67 16 37 H 0.05 1.98 7.42 -2.39 -0.02 1.96 16 38 H 0.02 0.91 8.07 -2.39 -0.02 0.89 16 39 H 0.06 2.46 5.34 -2.38 -0.01 2.45 16 40 H 0.00 0.23 7.34 -2.39 -0.02 0.21 16 41 H 0.02 1.05 7.34 -2.39 -0.02 1.04 16 42 H 0.02 0.82 8.03 -2.39 -0.02 0.80 16 43 H 0.25 14.59 8.31 -92.70 -0.77 13.82 16 44 H 0.12 1.31 7.34 -2.38 -0.02 1.29 16 45 H 0.11 1.50 7.77 -2.39 -0.02 1.49 16 46 H 0.07 1.05 7.46 -2.39 -0.02 1.03 16 47 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 48 H 0.05 1.44 5.95 -2.39 -0.01 1.43 16 49 H 0.16 1.16 7.35 -2.91 -0.02 1.14 16 50 H 0.18 1.44 8.06 -2.91 -0.02 1.42 16 51 H 0.17 1.90 8.06 -2.91 -0.02 1.87 16 52 H 0.14 1.90 8.01 -2.91 -0.02 1.88 16 Total: -1.00 -73.84 406.55 5.32 -68.52 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: 0.89 Total: 13.68 kcal Atomic # 6 Polarization: 4.36 SS G_CDS: 8.28 Total: 12.65 kcal Atomic # 7 Polarization: -115.00 SS G_CDS: -5.84 Total: -120.83 kcal Atomic # 8 Polarization: -20.97 SS G_CDS: -0.04 Total: -21.01 kcal Atomic # 14 Polarization: 44.97 SS G_CDS: 2.03 Total: 47.00 kcal Total: -73.84 5.32 -68.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001332711233.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.221 kcal (2) G-P(sol) polarization free energy of solvation -73.842 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -8.622 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.520 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.300 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.80 seconds