Wall clock time and date at job start Tue Mar 31 2020 17:37:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46962 * 2 1 4 4 C 1.52997 * 109.47125 * 239.99332 * 2 1 3 5 5 N 1.46901 * 109.47286 * 65.00327 * 4 2 1 6 6 C 1.46898 * 110.99720 * 66.04361 * 5 4 2 7 7 C 1.50699 * 109.47155 * 193.95501 * 6 5 4 8 8 H 1.08004 * 119.99782 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99866 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99965 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47160 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47037 * 119.99871 * 11 9 7 14 14 H 1.48504 * 109.46674 * 240.00045 * 11 9 7 15 15 C 1.46898 * 110.99845 * 190.00038 * 5 4 2 16 16 C 1.50707 * 109.46592 * 170.00327 * 15 5 4 17 17 C 1.38227 * 119.62024 * 94.97729 * 16 15 5 18 18 C 1.38627 * 119.15702 * 179.78495 * 17 16 15 19 19 C 1.38669 * 118.42389 * 0.47826 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.49762 * 19 18 17 21 21 N 1.31856 * 119.61172 * 274.99481 * 16 15 5 22 22 C 1.53006 * 109.46681 * 119.99305 * 2 1 3 23 23 N 1.46893 * 109.47236 * 295.00143 * 22 2 1 24 24 C 1.47013 * 111.00006 * 293.63385 * 23 22 2 25 25 C 1.53097 * 109.25943 * 177.61158 * 24 23 22 26 26 O 1.43014 * 109.26062 * 56.84850 * 25 24 23 27 27 C 1.43019 * 113.73509 * 301.32919 * 26 25 24 28 28 C 1.47018 * 111.00189 * 170.00157 * 23 22 2 29 29 H 1.09007 * 109.47360 * 300.00671 * 1 2 3 30 30 H 1.09005 * 109.46603 * 60.00494 * 1 2 3 31 31 H 1.08998 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47217 * 305.00221 * 4 2 1 33 33 H 1.08999 * 109.47008 * 185.00769 * 4 2 1 34 34 H 1.09002 * 109.47442 * 313.95778 * 6 5 4 35 35 H 1.08997 * 109.47281 * 73.95810 * 6 5 4 36 36 H 0.96999 * 120.00005 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47549 * 49.99892 * 15 5 4 38 38 H 1.08997 * 109.47171 * 289.99469 * 15 5 4 39 39 H 1.07998 * 120.41916 * 359.97438 * 17 16 15 40 40 H 1.08008 * 120.78688 * 180.22921 * 18 17 16 41 41 H 1.08002 * 120.42244 * 179.78279 * 19 18 17 42 42 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 43 43 H 1.09005 * 109.46675 * 55.00152 * 22 2 1 44 44 H 1.08998 * 109.46695 * 174.99479 * 22 2 1 45 45 H 1.09002 * 109.50812 * 297.54270 * 24 23 22 46 46 H 1.09002 * 109.50696 * 57.67066 * 24 23 22 47 47 H 1.09004 * 109.50183 * 296.91364 * 25 24 23 48 48 H 1.08998 * 109.54322 * 176.80652 * 25 24 23 49 49 H 1.08993 * 109.50776 * 298.73825 * 27 26 25 50 50 H 1.09002 * 109.53720 * 178.62856 * 27 26 25 51 51 H 1.09003 * 109.50170 * 302.32948 * 28 23 22 52 52 H 1.09000 * 109.50383 * 62.45081 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.6515 0.0372 -2.4456 6 6 2.3342 1.3371 -2.4895 7 6 1.6722 2.2178 -3.5177 8 1 0.8284 1.8488 -4.0818 9 6 2.1438 3.4945 -3.7382 10 7 3.1710 3.9440 -3.0509 11 14 1.3227 4.5864 -5.0122 12 1 0.1972 3.8509 -5.6430 13 1 0.8059 5.8129 -4.3537 14 1 2.3126 4.9629 -6.0532 15 6 1.9126 -0.7362 -3.6670 16 6 1.2832 -0.0402 -4.8463 17 6 2.0435 0.8175 -5.6189 18 6 1.4560 1.4492 -6.7041 19 6 0.1172 1.2012 -6.9668 20 6 -0.5792 0.3307 -6.1503 21 7 0.0135 -0.2563 -5.1288 22 6 2.0399 -0.7211 1.2494 23 7 1.6512 0.0376 2.4456 24 6 2.3403 1.3354 2.4933 25 6 1.8626 2.1160 3.7206 26 8 2.0959 1.3357 4.8962 27 6 1.4390 0.0654 4.8837 28 6 1.9125 -0.7360 3.6682 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7200 -1.2950 33 1 3.1263 -0.7997 -1.2054 34 1 2.2736 1.8126 -1.5105 35 1 3.3804 1.1892 -2.7573 36 1 3.5030 4.8420 -3.2063 37 1 1.4858 -1.7337 -3.5636 38 1 2.9883 -0.8156 -3.8237 39 1 3.0828 0.9910 -5.3819 40 1 2.0265 2.1217 -7.3277 41 1 -0.3738 1.6788 -7.8019 42 1 -1.6211 0.1291 -6.3507 43 1 1.6052 -1.7197 1.2953 44 1 3.1262 -0.7995 1.2057 45 1 3.4162 1.1740 2.5608 46 1 2.1125 1.9018 1.5903 47 1 0.7967 2.3240 3.6274 48 1 2.4117 3.0548 3.7921 49 1 0.3608 0.2137 4.8243 50 1 1.6817 -0.4796 5.7960 51 1 1.3723 -1.6817 3.6228 52 1 2.9815 -0.9305 3.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364360500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:47 Heat of formation + Delta-G solvation = 11.932412 kcal Electronic energy + Delta-G solvation = -30128.327289 eV Core-core repulsion = 26321.368651 eV Total energy + Delta-G solvation = -3806.958638 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -39.71260 -39.53552 -37.49612 -35.86031 -33.28072 -32.54725 -31.54773 -31.18920 -30.54732 -27.79428 -27.57441 -26.23063 -24.66894 -24.07039 -23.28413 -22.65652 -21.99338 -20.59564 -20.09005 -19.06006 -16.85432 -16.44404 -16.16041 -16.07510 -15.54907 -15.23899 -15.10291 -15.06716 -14.87305 -14.56836 -14.34804 -14.10496 -13.80793 -13.30628 -13.06825 -12.86596 -12.52489 -12.44013 -12.26027 -12.10054 -11.97063 -11.82360 -11.58238 -11.42319 -11.22298 -11.15669 -10.89946 -10.72349 -10.66672 -10.63260 -10.52405 -10.23874 -10.05824 -9.71930 -9.59495 -9.31931 -8.94490 -8.63902 -8.53801 -8.31454 -7.80698 -7.27943 -6.11821 -4.03025 1.93816 2.14713 3.23493 3.33361 3.40491 3.71737 3.87527 4.35755 4.49066 4.81477 4.93491 4.99504 5.06487 5.08230 5.14550 5.23436 5.27214 5.33380 5.49180 5.51258 5.52002 5.55667 5.58927 5.63971 5.72883 5.78444 5.82178 5.83352 5.92833 5.96773 5.97620 6.08794 6.09549 6.19208 6.26593 6.44143 6.45556 6.55237 6.68789 6.80803 6.91826 6.95335 6.99724 7.04415 7.07609 7.13222 7.19684 7.25876 7.51570 7.78087 8.03899 8.12419 8.48018 8.85597 8.98759 9.53411 10.98126 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.003279 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.402592 B = 8537.243896 C = 9688.617190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C -0.084 4.084 3 H 0.080 0.920 4 C 0.066 3.934 5 N -0.524 5.524 6 C 0.187 3.813 7 C -0.492 4.492 8 H 0.075 0.925 9 C 0.061 3.939 10 N -0.893 5.893 11 Si 0.875 3.125 12 H -0.261 1.261 13 H -0.286 1.286 14 H -0.284 1.284 15 C 0.118 3.882 16 C 0.162 3.838 17 C -0.083 4.083 18 C -0.110 4.110 19 C -0.175 4.175 20 C 0.067 3.933 21 N -0.475 5.475 22 C 0.063 3.937 23 N -0.531 5.531 24 C 0.014 3.986 25 C 0.064 3.936 26 O -0.390 6.390 27 C 0.065 3.935 28 C 0.018 3.982 29 H 0.049 0.951 30 H 0.067 0.933 31 H 0.038 0.962 32 H 0.061 0.939 33 H 0.019 0.981 34 H 0.035 0.965 35 H -0.010 1.010 36 H 0.260 0.740 37 H 0.071 0.929 38 H 0.036 0.964 39 H 0.127 0.873 40 H 0.117 0.883 41 H 0.116 0.884 42 H 0.140 0.860 43 H 0.072 0.928 44 H 0.030 0.970 45 H 0.040 0.960 46 H 0.097 0.903 47 H 0.060 0.940 48 H 0.097 0.903 49 H 0.058 0.942 50 H 0.093 0.907 51 H 0.083 0.917 52 H 0.039 0.961 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.683 -8.782 6.419 11.007 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.103 4.103 3 H 0.098 0.902 4 C -0.063 4.063 5 N -0.248 5.248 6 C 0.062 3.938 7 C -0.530 4.530 8 H 0.093 0.907 9 C -0.141 4.141 10 N -0.532 5.532 11 Si 0.702 3.298 12 H -0.185 1.185 13 H -0.213 1.213 14 H -0.210 1.210 15 C -0.011 4.011 16 C 0.021 3.979 17 C -0.103 4.103 18 C -0.136 4.136 19 C -0.195 4.195 20 C -0.088 4.088 21 N -0.185 5.185 22 C -0.065 4.065 23 N -0.256 5.256 24 C -0.114 4.114 25 C -0.012 4.012 26 O -0.308 6.308 27 C -0.012 4.012 28 C -0.111 4.111 29 H 0.068 0.932 30 H 0.087 0.913 31 H 0.057 0.943 32 H 0.080 0.920 33 H 0.037 0.963 34 H 0.053 0.947 35 H 0.007 0.993 36 H 0.070 0.930 37 H 0.090 0.910 38 H 0.054 0.946 39 H 0.145 0.855 40 H 0.135 0.865 41 H 0.135 0.865 42 H 0.157 0.843 43 H 0.090 0.910 44 H 0.048 0.952 45 H 0.059 0.941 46 H 0.115 0.885 47 H 0.078 0.922 48 H 0.115 0.885 49 H 0.077 0.923 50 H 0.111 0.889 51 H 0.101 0.899 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges -2.958 -8.956 7.116 11.815 hybrid contribution 1.767 1.259 -1.484 2.629 sum -1.191 -7.697 5.632 9.611 Atomic orbital electron populations 1.21519 0.93943 1.00577 1.01867 1.21163 0.97628 1.00186 0.91308 0.90150 1.21974 0.96603 0.96745 0.91024 1.62033 1.59427 1.04522 0.98861 1.19880 0.91542 0.84314 0.98098 1.21555 1.14702 0.97369 1.19356 0.90688 1.24868 0.95052 0.97657 0.96509 1.69959 1.24787 1.17602 1.40870 0.86763 0.80215 0.80922 0.81853 1.18539 1.21257 1.21047 1.20692 0.96284 0.95718 0.88371 1.20640 0.89280 0.94094 0.93865 1.21677 1.01664 0.94119 0.92888 1.21223 0.95074 0.99275 0.98035 1.21833 0.95501 1.00640 1.01525 1.22307 0.99307 0.95256 0.91964 1.67336 1.10530 1.24495 1.16096 1.22184 0.97585 0.97073 0.89688 1.62168 1.57817 1.03803 1.01792 1.22855 0.96571 0.91694 1.00268 1.22686 1.01065 0.93817 0.83676 1.87958 1.73095 1.29422 1.40357 1.22625 0.96997 0.84322 0.97307 1.22760 0.99689 0.97635 0.90980 0.93189 0.91349 0.94309 0.92049 0.96291 0.94667 0.99269 0.93032 0.91013 0.94637 0.85520 0.86484 0.86550 0.84294 0.90965 0.95173 0.94145 0.88523 0.92180 0.88465 0.92341 0.88862 0.89862 0.94319 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.98 8.97 37.16 0.33 -1.65 16 2 C -0.08 -1.34 2.26 -90.62 -0.20 -1.55 16 3 H 0.08 1.50 4.28 -51.93 -0.22 1.28 16 4 C 0.07 1.10 4.35 -3.83 -0.02 1.09 16 5 N -0.52 -10.57 4.02 -237.52 -0.95 -11.53 16 6 C 0.19 4.46 4.55 -4.98 -0.02 4.44 16 7 C -0.49 -12.66 5.77 -34.44 -0.20 -12.86 16 8 H 0.08 1.99 4.93 -52.48 -0.26 1.73 16 9 C 0.06 1.62 5.46 -17.82 -0.10 1.53 16 10 N -0.89 -25.03 13.29 55.43 0.74 -24.29 16 11 Si 0.87 20.96 28.17 -169.99 -4.79 16.17 16 12 H -0.26 -6.18 7.11 56.52 0.40 -5.78 16 13 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 14 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 15 C 0.12 2.23 5.28 -4.97 -0.03 2.20 16 16 C 0.16 3.27 4.01 -82.58 -0.33 2.94 16 17 C -0.08 -1.67 6.30 -39.44 -0.25 -1.91 16 18 C -0.11 -2.07 8.72 -39.28 -0.34 -2.41 16 19 C -0.17 -3.07 10.11 -39.44 -0.40 -3.47 16 20 C 0.07 1.21 11.18 -17.55 -0.20 1.02 16 21 N -0.47 -9.61 10.16 -9.47 -0.10 -9.71 16 22 C 0.06 0.84 4.35 -3.82 -0.02 0.82 16 23 N -0.53 -6.91 4.18 -234.31 -0.98 -7.89 16 24 C 0.01 0.19 5.44 -3.71 -0.02 0.17 16 25 C 0.06 0.79 7.01 37.21 0.26 1.05 16 26 O -0.39 -5.02 10.83 -35.23 -0.38 -5.40 16 27 C 0.06 0.67 7.01 37.21 0.26 0.93 16 28 C 0.02 0.19 5.64 -3.71 -0.02 0.17 16 29 H 0.05 0.79 7.75 -51.93 -0.40 0.39 16 30 H 0.07 1.32 7.75 -51.93 -0.40 0.92 16 31 H 0.04 0.58 8.14 -51.93 -0.42 0.16 16 32 H 0.06 0.94 7.93 -51.93 -0.41 0.52 16 33 H 0.02 0.32 8.12 -51.93 -0.42 -0.10 16 34 H 0.04 0.91 5.91 -51.93 -0.31 0.60 16 35 H -0.01 -0.27 7.99 -51.93 -0.41 -0.68 16 36 H 0.26 7.01 8.31 -40.82 -0.34 6.67 16 37 H 0.07 1.24 7.93 -51.93 -0.41 0.83 16 38 H 0.04 0.64 7.91 -51.93 -0.41 0.23 16 39 H 0.13 2.59 7.98 -52.49 -0.42 2.17 16 40 H 0.12 2.00 8.06 -52.48 -0.42 1.58 16 41 H 0.12 1.71 8.06 -52.49 -0.42 1.29 16 42 H 0.14 2.09 8.06 -52.49 -0.42 1.67 16 43 H 0.07 0.88 8.04 -51.93 -0.42 0.47 16 44 H 0.03 0.41 8.12 -51.93 -0.42 -0.01 16 45 H 0.04 0.56 8.14 -51.93 -0.42 0.14 16 46 H 0.10 1.45 6.29 -51.93 -0.33 1.13 16 47 H 0.06 0.73 8.14 -51.93 -0.42 0.31 16 48 H 0.10 1.07 8.14 -51.93 -0.42 0.65 16 49 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 50 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.08 0.78 8.09 -51.93 -0.42 0.36 16 52 H 0.04 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 396.86 15.07 5.98 5.98 Total: -1.00 -29.21 396.86 -10.80 -40.01 By element: Atomic # 1 Polarization: 13.19 SS G_CDS: -9.03 Total: 4.16 kcal Atomic # 6 Polarization: -6.22 SS G_CDS: -1.29 Total: -7.50 kcal Atomic # 7 Polarization: -52.12 SS G_CDS: -1.29 Total: -53.41 kcal Atomic # 8 Polarization: -5.02 SS G_CDS: -0.38 Total: -5.40 kcal Atomic # 14 Polarization: 20.96 SS G_CDS: -4.79 Total: 16.17 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -29.21 -10.80 -40.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364360500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.943 kcal (2) G-P(sol) polarization free energy of solvation -29.210 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 22.733 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.800 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.010 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.932 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds