Wall clock time and date at job start Tue Mar 31 2020 17:37:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 H 1.08997 * 109.46962 * 2 1 4 4 C 1.52997 * 109.47125 * 239.99332 * 2 1 3 5 5 N 1.46901 * 109.47286 * 65.00327 * 4 2 1 6 6 C 1.46898 * 110.99720 * 66.04361 * 5 4 2 7 7 C 1.50699 * 109.47155 * 193.95501 * 6 5 4 8 8 H 1.08004 * 119.99782 * 0.02562 * 7 6 5 9 9 C 1.37879 * 120.00305 * 180.02562 * 7 6 5 10 10 N 1.31511 * 119.99866 * 359.97438 * 9 7 6 11 11 Si 1.86800 * 119.99965 * 180.02562 * 9 7 6 12 12 H 1.48502 * 109.47160 * 359.97438 * 11 9 7 13 13 H 1.48493 * 109.47037 * 119.99871 * 11 9 7 14 14 H 1.48504 * 109.46674 * 240.00045 * 11 9 7 15 15 C 1.46898 * 110.99845 * 190.00038 * 5 4 2 16 16 C 1.50707 * 109.46592 * 170.00327 * 15 5 4 17 17 C 1.38227 * 119.62024 * 94.97729 * 16 15 5 18 18 C 1.38627 * 119.15702 * 179.78495 * 17 16 15 19 19 C 1.38669 * 118.42389 * 0.47826 * 18 17 16 20 20 C 1.38186 * 119.16143 * 359.49762 * 19 18 17 21 21 N 1.31856 * 119.61172 * 274.99481 * 16 15 5 22 22 C 1.53006 * 109.46681 * 119.99305 * 2 1 3 23 23 N 1.46893 * 109.47236 * 295.00143 * 22 2 1 24 24 C 1.47013 * 111.00006 * 293.63385 * 23 22 2 25 25 C 1.53097 * 109.25943 * 177.61158 * 24 23 22 26 26 O 1.43014 * 109.26062 * 56.84850 * 25 24 23 27 27 C 1.43019 * 113.73509 * 301.32919 * 26 25 24 28 28 C 1.47018 * 111.00189 * 170.00157 * 23 22 2 29 29 H 1.09007 * 109.47360 * 300.00671 * 1 2 3 30 30 H 1.09005 * 109.46603 * 60.00494 * 1 2 3 31 31 H 1.08998 * 109.47566 * 180.02562 * 1 2 3 32 32 H 1.09005 * 109.47217 * 305.00221 * 4 2 1 33 33 H 1.08999 * 109.47008 * 185.00769 * 4 2 1 34 34 H 1.09002 * 109.47442 * 313.95778 * 6 5 4 35 35 H 1.08997 * 109.47281 * 73.95810 * 6 5 4 36 36 H 0.96999 * 120.00005 * 179.97438 * 10 9 7 37 37 H 1.08993 * 109.47549 * 49.99892 * 15 5 4 38 38 H 1.08997 * 109.47171 * 289.99469 * 15 5 4 39 39 H 1.07998 * 120.41916 * 359.97438 * 17 16 15 40 40 H 1.08008 * 120.78688 * 180.22921 * 18 17 16 41 41 H 1.08002 * 120.42244 * 179.78279 * 19 18 17 42 42 H 1.07996 * 119.61757 * 180.25243 * 20 19 18 43 43 H 1.09005 * 109.46675 * 55.00152 * 22 2 1 44 44 H 1.08998 * 109.46695 * 174.99479 * 22 2 1 45 45 H 1.09002 * 109.50812 * 297.54270 * 24 23 22 46 46 H 1.09002 * 109.50696 * 57.67066 * 24 23 22 47 47 H 1.09004 * 109.50183 * 296.91364 * 25 24 23 48 48 H 1.08998 * 109.54322 * 176.80652 * 25 24 23 49 49 H 1.08993 * 109.50776 * 298.73825 * 27 26 25 50 50 H 1.09002 * 109.53720 * 178.62856 * 27 26 25 51 51 H 1.09003 * 109.50170 * 302.32948 * 28 23 22 52 52 H 1.09000 * 109.50383 * 62.45081 * 28 23 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2491 5 7 1.6515 0.0372 -2.4456 6 6 2.3342 1.3371 -2.4895 7 6 1.6722 2.2178 -3.5177 8 1 0.8284 1.8488 -4.0818 9 6 2.1438 3.4945 -3.7382 10 7 3.1710 3.9440 -3.0509 11 14 1.3227 4.5864 -5.0122 12 1 0.1972 3.8509 -5.6430 13 1 0.8059 5.8129 -4.3537 14 1 2.3126 4.9629 -6.0532 15 6 1.9126 -0.7362 -3.6670 16 6 1.2832 -0.0402 -4.8463 17 6 2.0435 0.8175 -5.6189 18 6 1.4560 1.4492 -6.7041 19 6 0.1172 1.2012 -6.9668 20 6 -0.5792 0.3307 -6.1503 21 7 0.0135 -0.2563 -5.1288 22 6 2.0399 -0.7211 1.2494 23 7 1.6512 0.0376 2.4456 24 6 2.3403 1.3354 2.4933 25 6 1.8626 2.1160 3.7206 26 8 2.0959 1.3357 4.8962 27 6 1.4390 0.0654 4.8837 28 6 1.9125 -0.7360 3.6682 29 1 -0.3634 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8901 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -1.7200 -1.2950 33 1 3.1263 -0.7997 -1.2054 34 1 2.2736 1.8126 -1.5105 35 1 3.3804 1.1892 -2.7573 36 1 3.5030 4.8420 -3.2063 37 1 1.4858 -1.7337 -3.5636 38 1 2.9883 -0.8156 -3.8237 39 1 3.0828 0.9910 -5.3819 40 1 2.0265 2.1217 -7.3277 41 1 -0.3738 1.6788 -7.8019 42 1 -1.6211 0.1291 -6.3507 43 1 1.6052 -1.7197 1.2953 44 1 3.1262 -0.7995 1.2057 45 1 3.4162 1.1740 2.5608 46 1 2.1125 1.9018 1.5903 47 1 0.7967 2.3240 3.6274 48 1 2.4117 3.0548 3.7921 49 1 0.3608 0.2137 4.8243 50 1 1.6817 -0.4796 5.7960 51 1 1.3723 -1.6817 3.6228 52 1 2.9815 -0.9305 3.7544 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364360500.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:37:45 Heat of formation + Delta-G solvation = -7.071937 kcal Electronic energy + Delta-G solvation = -30129.151380 eV Core-core repulsion = 26321.368651 eV Total energy + Delta-G solvation = -3807.782729 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.14168 -40.61672 -38.88707 -37.10065 -34.87598 -34.19004 -33.07334 -32.16981 -31.97284 -29.50569 -28.84030 -27.65216 -26.03158 -25.08410 -24.85225 -24.13721 -23.48353 -21.90522 -21.30590 -20.44262 -18.69093 -17.62997 -17.52727 -17.09630 -17.07670 -16.59077 -16.42820 -16.36626 -16.12160 -15.98259 -15.62575 -15.49904 -15.11075 -14.71720 -14.50433 -14.36084 -14.03643 -13.93839 -13.67555 -13.48662 -13.40513 -13.11536 -13.02322 -12.80824 -12.60314 -12.47636 -12.38865 -12.28073 -12.25300 -11.96148 -11.77133 -11.67500 -11.44766 -11.24989 -11.14420 -10.64632 -10.58678 -10.43370 -10.12076 -9.38913 -9.36021 -8.93911 -8.16153 -6.12242 0.46993 0.65067 1.32432 1.38175 1.48698 2.40130 2.70378 2.93323 3.02951 3.21007 3.54611 3.63333 3.86054 3.93129 4.03090 4.06502 4.16551 4.17441 4.19131 4.22124 4.32517 4.37940 4.43652 4.49197 4.55489 4.57333 4.64562 4.66717 4.70306 4.74235 4.76813 4.83201 4.91158 4.93826 4.97553 5.00494 5.08422 5.10652 5.24583 5.27636 5.38162 5.45673 5.50725 5.54898 5.64589 5.75270 5.94395 6.04551 6.05546 6.15321 6.17378 6.39459 6.68376 6.95216 7.36452 7.48181 8.94607 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015285 B = 0.003279 C = 0.002889 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1831.402592 B = 8537.243896 C = 9688.617190 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.108 4.108 2 C -0.077 4.077 3 H 0.046 0.954 4 C 0.066 3.934 5 N -0.529 5.529 6 C 0.207 3.793 7 C -0.485 4.485 8 H 0.072 0.928 9 C 0.017 3.983 10 N -0.930 5.930 11 Si 0.923 3.077 12 H -0.252 1.252 13 H -0.294 1.294 14 H -0.276 1.276 15 C 0.117 3.883 16 C 0.146 3.854 17 C -0.103 4.103 18 C -0.114 4.114 19 C -0.175 4.175 20 C 0.064 3.936 21 N -0.493 5.493 22 C 0.072 3.928 23 N -0.537 5.537 24 C 0.018 3.982 25 C 0.068 3.932 26 O -0.404 6.404 27 C 0.061 3.939 28 C 0.018 3.982 29 H 0.051 0.949 30 H 0.033 0.967 31 H 0.056 0.944 32 H 0.087 0.913 33 H 0.017 0.983 34 H 0.011 0.989 35 H -0.039 1.039 36 H 0.259 0.741 37 H 0.092 0.908 38 H 0.037 0.963 39 H 0.111 0.889 40 H 0.132 0.868 41 H 0.152 0.848 42 H 0.173 0.827 43 H 0.095 0.905 44 H 0.026 0.974 45 H 0.031 0.969 46 H 0.073 0.927 47 H 0.061 0.939 48 H 0.105 0.895 49 H 0.062 0.938 50 H 0.119 0.881 51 H 0.105 0.895 52 H 0.036 0.964 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.418 -10.286 6.162 12.468 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C -0.097 4.097 3 H 0.064 0.936 4 C -0.063 4.063 5 N -0.254 5.254 6 C 0.081 3.919 7 C -0.523 4.523 8 H 0.090 0.910 9 C -0.181 4.181 10 N -0.572 5.572 11 Si 0.749 3.251 12 H -0.175 1.175 13 H -0.221 1.221 14 H -0.202 1.202 15 C -0.012 4.012 16 C 0.007 3.993 17 C -0.124 4.124 18 C -0.140 4.140 19 C -0.194 4.194 20 C -0.091 4.091 21 N -0.203 5.203 22 C -0.056 4.056 23 N -0.262 5.262 24 C -0.111 4.111 25 C -0.008 4.008 26 O -0.323 6.323 27 C -0.016 4.016 28 C -0.109 4.109 29 H 0.070 0.930 30 H 0.052 0.948 31 H 0.075 0.925 32 H 0.106 0.894 33 H 0.035 0.965 34 H 0.029 0.971 35 H -0.021 1.021 36 H 0.068 0.932 37 H 0.110 0.890 38 H 0.055 0.945 39 H 0.129 0.871 40 H 0.150 0.850 41 H 0.170 0.830 42 H 0.190 0.810 43 H 0.113 0.887 44 H 0.044 0.956 45 H 0.049 0.951 46 H 0.091 0.909 47 H 0.079 0.921 48 H 0.123 0.877 49 H 0.080 0.920 50 H 0.137 0.863 51 H 0.123 0.877 52 H 0.054 0.946 Dipole moment (debyes) X Y Z Total from point charges -4.697 -10.490 6.859 13.385 hybrid contribution 2.240 1.630 -1.454 3.129 sum -2.457 -8.861 5.405 10.666 Atomic orbital electron populations 1.21359 0.93843 1.01136 1.00176 1.21047 0.97482 0.98607 0.92522 0.93593 1.22078 0.96760 0.97490 0.89936 1.61972 1.58884 1.03841 1.00668 1.19485 0.90104 0.86172 0.96181 1.21683 1.14073 0.97447 1.19136 0.91037 1.25475 0.95571 0.98926 0.98137 1.70067 1.26496 1.17888 1.42751 0.86003 0.79759 0.79120 0.80179 1.17513 1.22064 1.20196 1.20765 0.96566 0.96254 0.87573 1.20772 0.89643 0.94571 0.94302 1.21659 1.01179 0.95323 0.94227 1.21538 0.96039 0.98889 0.97518 1.22233 0.94882 1.00110 1.02217 1.22955 1.00772 0.94381 0.91010 1.67373 1.10409 1.25330 1.17175 1.22057 0.97357 0.97553 0.88612 1.62172 1.57670 1.03757 1.02622 1.22750 0.96122 0.92272 0.99915 1.22652 1.01134 0.93980 0.83075 1.87941 1.73611 1.30523 1.40227 1.22844 0.97050 0.83456 0.98225 1.22861 0.99915 0.98256 0.89916 0.93020 0.94778 0.92459 0.89449 0.96460 0.97129 1.02097 0.93246 0.89003 0.94510 0.87113 0.85030 0.83041 0.81023 0.88715 0.95558 0.95057 0.90891 0.92107 0.87691 0.92013 0.86288 0.87663 0.94611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -3.47 8.97 71.98 0.65 -2.82 16 2 C -0.08 -2.50 2.26 -10.79 -0.02 -2.52 16 3 H 0.05 1.83 4.28 -2.39 -0.01 1.82 16 4 C 0.07 2.20 4.35 86.30 0.38 2.57 16 5 N -0.53 -21.69 4.02 -905.38 -3.64 -25.33 16 6 C 0.21 10.32 4.55 85.56 0.39 10.71 16 7 C -0.48 -25.58 5.77 25.60 0.15 -25.43 16 8 H 0.07 3.80 4.93 -2.91 -0.01 3.79 16 9 C 0.02 0.91 5.46 84.66 0.46 1.38 16 10 N -0.93 -54.08 13.29 21.45 0.28 -53.79 16 11 Si 0.92 43.07 28.17 68.60 1.93 45.00 16 12 H -0.25 -11.20 7.11 99.48 0.71 -10.49 16 13 H -0.29 -13.99 7.11 99.48 0.71 -13.29 16 14 H -0.28 -12.44 7.11 99.48 0.71 -11.73 16 15 C 0.12 4.40 5.28 85.56 0.45 4.85 16 16 C 0.15 5.86 4.01 42.55 0.17 6.04 16 17 C -0.10 -4.15 6.30 22.36 0.14 -4.01 16 18 C -0.11 -4.10 8.72 22.47 0.20 -3.90 16 19 C -0.17 -5.60 10.11 22.36 0.23 -5.38 16 20 C 0.06 2.15 11.18 84.67 0.95 3.10 16 21 N -0.49 -19.18 10.16 -183.88 -1.87 -21.04 16 22 C 0.07 1.86 4.35 86.31 0.38 2.24 16 23 N -0.54 -13.53 4.18 -895.21 -3.74 -17.27 16 24 C 0.02 0.50 5.44 86.31 0.47 0.97 16 25 C 0.07 1.68 7.01 72.01 0.50 2.19 16 26 O -0.40 -9.98 10.83 -148.98 -1.61 -11.59 16 27 C 0.06 1.14 7.01 72.01 0.50 1.64 16 28 C 0.02 0.36 5.64 86.31 0.49 0.85 16 29 H 0.05 1.62 7.75 -2.38 -0.02 1.60 16 30 H 0.03 1.31 7.75 -2.38 -0.02 1.30 16 31 H 0.06 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 2.48 7.93 -2.38 -0.02 2.47 16 33 H 0.02 0.59 8.12 -2.39 -0.02 0.57 16 34 H 0.01 0.59 5.91 -2.39 -0.01 0.57 16 35 H -0.04 -2.11 7.99 -2.39 -0.02 -2.13 16 36 H 0.26 14.41 8.31 -92.71 -0.77 13.64 16 37 H 0.09 3.05 7.93 -2.39 -0.02 3.03 16 38 H 0.04 1.36 7.91 -2.39 -0.02 1.34 16 39 H 0.11 4.71 7.98 -2.91 -0.02 4.69 16 40 H 0.13 4.25 8.06 -2.91 -0.02 4.23 16 41 H 0.15 3.76 8.06 -2.91 -0.02 3.74 16 42 H 0.17 4.49 8.06 -2.91 -0.02 4.46 16 43 H 0.09 2.04 8.04 -2.38 -0.02 2.02 16 44 H 0.03 0.70 8.12 -2.39 -0.02 0.68 16 45 H 0.03 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.07 2.37 6.29 -2.39 -0.02 2.35 16 47 H 0.06 1.47 8.14 -2.38 -0.02 1.45 16 48 H 0.11 2.35 8.14 -2.39 -0.02 2.33 16 49 H 0.06 1.13 8.14 -2.39 -0.02 1.11 16 50 H 0.12 1.61 8.14 -2.39 -0.02 1.59 16 51 H 0.11 1.63 8.09 -2.39 -0.02 1.61 16 52 H 0.04 0.74 8.14 -2.39 -0.02 0.72 16 Total: -1.00 -64.32 396.86 -1.29 -65.62 By element: Atomic # 1 Polarization: 25.06 SS G_CDS: 0.88 Total: 25.94 kcal Atomic # 6 Polarization: -14.00 SS G_CDS: 6.47 Total: -7.53 kcal Atomic # 7 Polarization: -108.47 SS G_CDS: -8.96 Total: -117.43 kcal Atomic # 8 Polarization: -9.98 SS G_CDS: -1.61 Total: -11.59 kcal Atomic # 14 Polarization: 43.07 SS G_CDS: 1.93 Total: 45.00 kcal Total: -64.32 -1.29 -65.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364360500.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.544 kcal (2) G-P(sol) polarization free energy of solvation -64.322 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.777 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.295 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.616 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.072 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds