Wall clock time and date at job start Tue Mar 31 2020 18:38:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.04019 * 2 1 4 4 C 1.35308 * 107.74876 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.04429 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.46692 * 263.83946 * 5 4 3 7 7 C 1.46847 * 110.99571 * 284.84739 * 6 5 4 8 8 C 1.53042 * 109.51852 * 185.84395 * 7 6 5 9 9 C 1.53124 * 109.27559 * 300.82148 * 8 7 6 10 10 C 1.53117 * 109.16198 * 57.65686 * 9 8 7 11 11 H 1.08998 * 109.50464 * 62.32790 * 10 9 8 12 12 C 1.50701 * 109.50235 * 182.40353 * 10 9 8 13 13 H 1.08001 * 120.00371 * 116.00012 * 12 10 9 14 14 C 1.37882 * 119.99952 * 296.00605 * 12 10 9 15 15 N 1.31507 * 119.99924 * 353.36719 * 14 12 10 16 16 Si 1.86800 * 120.00016 * 173.37768 * 14 12 10 17 17 H 1.48497 * 109.47135 * 265.04442 * 16 14 12 18 18 H 1.48496 * 109.47466 * 145.04351 * 16 14 12 19 19 H 1.48501 * 109.47104 * 25.04204 * 16 14 12 20 20 C 1.46844 * 111.00150 * 49.06075 * 6 5 4 21 21 C 1.39870 * 107.91849 * 0.26346 * 4 3 2 22 22 C 1.50700 * 125.89810 * 179.73222 * 21 4 3 23 23 C 1.53178 * 109.54649 * 234.94954 * 22 21 4 24 24 C 1.53092 * 109.16476 * 183.15400 * 23 22 21 25 25 O 1.42903 * 109.41318 * 57.61100 * 24 23 22 26 26 C 1.42905 * 114.09780 * 298.83748 * 25 24 23 27 27 C 1.53098 * 109.41188 * 61.15979 * 26 25 24 28 28 N 1.30840 * 108.20373 * 359.55792 * 21 4 3 29 29 H 1.09000 * 109.47540 * 89.99610 * 1 2 3 30 30 H 1.09002 * 109.47265 * 209.99874 * 1 2 3 31 31 H 1.09011 * 109.46853 * 329.99852 * 1 2 3 32 32 H 1.08005 * 126.12514 * 359.96424 * 3 2 1 33 33 H 1.08995 * 109.47597 * 143.84062 * 5 4 3 34 34 H 1.08995 * 109.46712 * 23.83311 * 5 4 3 35 35 H 1.08998 * 109.46546 * 65.83216 * 7 6 5 36 36 H 1.08995 * 109.46438 * 305.85777 * 7 6 5 37 37 H 1.08999 * 109.50040 * 180.88438 * 8 7 6 38 38 H 1.08993 * 109.50428 * 60.76170 * 8 7 6 39 39 H 1.09001 * 109.52290 * 297.74890 * 9 8 7 40 40 H 1.09008 * 109.57293 * 177.59571 * 9 8 7 41 41 H 0.97008 * 119.99927 * 180.02562 * 15 14 12 42 42 H 1.09003 * 109.46300 * 54.14143 * 20 6 5 43 43 H 1.09003 * 109.46004 * 294.17619 * 20 6 5 44 44 H 1.09003 * 109.54694 * 355.22217 * 22 21 4 45 45 H 1.09000 * 109.52100 * 303.06282 * 23 22 21 46 46 H 1.09000 * 109.52295 * 63.24563 * 23 22 21 47 47 H 1.09001 * 109.48189 * 297.62821 * 24 23 22 48 48 H 1.08996 * 109.47785 * 177.59014 * 24 23 22 49 49 H 1.09002 * 109.48195 * 301.17987 * 26 25 24 50 50 H 1.08997 * 109.48971 * 181.14543 * 26 25 24 51 51 H 1.09003 * 109.52004 * 182.48028 * 27 26 25 52 52 H 1.09002 * 109.51814 * 62.29869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7681 1.5452 0.0013 6 7 5.2532 1.7101 -1.3755 7 6 5.9333 0.4954 -1.8427 8 6 6.5502 0.7522 -3.2196 9 6 5.4455 1.1513 -4.2020 10 6 4.7213 2.3901 -3.6678 11 1 5.4228 3.2218 -3.6025 12 6 3.5942 2.7547 -4.5993 13 1 2.5719 2.7087 -4.2540 14 6 3.8680 3.1468 -5.8926 15 7 5.1131 3.3287 -6.2748 16 14 2.4704 3.4198 -7.1015 17 1 2.2556 2.1845 -7.8971 18 1 2.8153 4.5411 -8.0119 19 1 1.2291 3.7509 -6.3566 20 6 4.1575 2.0858 -2.2781 21 6 3.5346 -0.7322 -0.0052 22 6 4.7496 -1.6237 -0.0123 23 6 4.6689 -2.5903 -1.1978 24 6 5.8663 -3.5431 -1.1518 25 8 5.8711 -4.2400 0.0958 26 6 5.9925 -3.3903 1.2383 27 6 4.8002 -2.4313 1.2882 28 7 2.2890 -1.1328 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.9282 2.1193 -0.0005 33 1 5.5467 1.0829 0.6080 34 1 4.5149 2.5206 0.4166 35 1 5.2131 -0.3196 -1.9139 36 1 6.7191 0.2250 -1.1374 37 1 7.0415 -0.1543 -3.5730 38 1 7.2806 1.5579 -3.1465 39 1 4.7357 0.3305 -4.3049 40 1 5.8849 1.3768 -5.1737 41 1 5.3057 3.6049 -7.1846 42 1 3.6535 2.9705 -1.8889 43 1 3.4456 1.2633 -2.3470 44 1 5.6489 -1.0138 -0.0980 45 1 3.7442 -3.1642 -1.1376 46 1 4.6882 -2.0259 -2.1301 47 1 6.7893 -2.9721 -1.2527 48 1 5.7914 -4.2608 -1.9687 49 1 6.9172 -2.8173 1.1686 50 1 6.0086 -3.9977 2.1432 51 1 4.9134 -1.7531 2.1341 52 1 3.8781 -3.0020 1.3987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001364993412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:49 Heat of formation + Delta-G solvation = 22.593887 kcal Electronic energy + Delta-G solvation = -31124.623403 eV Core-core repulsion = 27318.127081 eV Total energy + Delta-G solvation = -3806.496322 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -41.41968 -39.21695 -38.07176 -34.95258 -33.87313 -32.53339 -31.70876 -31.17026 -29.82451 -29.64787 -27.44372 -25.71480 -24.93610 -24.13233 -23.58757 -21.87318 -21.74119 -20.83615 -19.98700 -19.19626 -18.35567 -16.70210 -16.33667 -16.09503 -16.06022 -15.44124 -14.90012 -14.88714 -14.50508 -14.40402 -14.24424 -14.00718 -13.79537 -13.64925 -13.16925 -12.82474 -12.68123 -12.56774 -12.35607 -12.29243 -12.14939 -12.03215 -11.71450 -11.36010 -11.34629 -11.09898 -10.93639 -10.86218 -10.64975 -10.63804 -10.49454 -10.20998 -10.02628 -9.81323 -9.59193 -9.44243 -9.06750 -8.95230 -8.70043 -8.31517 -8.16319 -7.55010 -5.97584 -4.00014 2.01751 2.59780 2.85956 3.30244 3.37716 3.39670 3.81116 4.43389 4.45026 4.59110 4.76816 4.80124 4.82179 4.96026 4.99389 5.09656 5.17768 5.23496 5.33615 5.34515 5.36020 5.40536 5.49517 5.58693 5.59765 5.67170 5.74532 5.82524 5.85293 5.94286 5.99404 6.05157 6.12386 6.20952 6.28644 6.34268 6.41100 6.52027 6.57542 6.75771 6.78613 6.82282 7.02292 7.12063 7.13388 7.25036 7.39671 7.73298 7.78273 7.86042 7.89791 8.07929 8.17078 8.52053 9.04349 9.63047 11.10982 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004111 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.097648 B = 6809.270851 C = 7884.186634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.105 3.895 2 N -0.378 5.378 3 C 0.067 3.933 4 C -0.256 4.256 5 C 0.128 3.872 6 N -0.528 5.528 7 C 0.053 3.947 8 C -0.118 4.118 9 C -0.104 4.104 10 C 0.053 3.947 11 H 0.037 0.963 12 C -0.513 4.513 13 H 0.050 0.950 14 C 0.065 3.935 15 N -0.886 5.886 16 Si 0.885 3.115 17 H -0.282 1.282 18 H -0.287 1.287 19 H -0.276 1.276 20 C 0.075 3.925 21 C 0.091 3.909 22 C -0.011 4.011 23 C -0.148 4.148 24 C 0.062 3.938 25 O -0.385 6.385 26 C 0.062 3.938 27 C -0.145 4.145 28 N -0.295 5.295 29 H 0.073 0.927 30 H 0.085 0.915 31 H 0.084 0.916 32 H 0.170 0.830 33 H 0.069 0.931 34 H 0.074 0.926 35 H 0.038 0.962 36 H 0.053 0.947 37 H 0.044 0.956 38 H 0.060 0.940 39 H 0.028 0.972 40 H 0.075 0.925 41 H 0.259 0.741 42 H 0.053 0.947 43 H 0.021 0.979 44 H 0.094 0.906 45 H 0.076 0.924 46 H 0.081 0.919 47 H 0.053 0.947 48 H 0.095 0.905 49 H 0.051 0.949 50 H 0.092 0.908 51 H 0.072 0.928 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.730 -9.405 15.805 18.473 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.037 4.037 2 N -0.160 5.160 3 C -0.079 4.079 4 C -0.269 4.269 5 C -0.001 4.001 6 N -0.250 5.250 7 C -0.075 4.075 8 C -0.156 4.156 9 C -0.142 4.142 10 C 0.035 3.965 11 H 0.056 0.944 12 C -0.552 4.552 13 H 0.068 0.932 14 C -0.136 4.136 15 N -0.525 5.525 16 Si 0.713 3.287 17 H -0.209 1.209 18 H -0.213 1.213 19 H -0.201 1.201 20 C -0.052 4.052 21 C -0.075 4.075 22 C -0.031 4.031 23 C -0.187 4.187 24 C -0.015 4.015 25 O -0.303 6.303 26 C -0.015 4.015 27 C -0.183 4.183 28 N -0.117 5.117 29 H 0.092 0.908 30 H 0.103 0.897 31 H 0.103 0.897 32 H 0.187 0.813 33 H 0.087 0.913 34 H 0.093 0.907 35 H 0.056 0.944 36 H 0.072 0.928 37 H 0.063 0.937 38 H 0.079 0.921 39 H 0.047 0.953 40 H 0.094 0.906 41 H 0.069 0.931 42 H 0.071 0.929 43 H 0.040 0.960 44 H 0.112 0.888 45 H 0.094 0.906 46 H 0.099 0.901 47 H 0.072 0.928 48 H 0.113 0.887 49 H 0.070 0.930 50 H 0.110 0.890 51 H 0.091 0.909 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -2.265 -10.137 15.653 18.786 hybrid contribution -1.178 0.688 -0.894 1.631 sum -3.443 -9.449 14.759 17.859 Atomic orbital electron populations 1.21794 0.74569 1.03953 1.03368 1.48321 1.06294 1.03859 1.57493 1.22341 0.90750 0.93238 1.01584 1.20811 0.96053 0.94004 1.16059 1.20570 0.91023 0.96754 0.91792 1.62409 1.28612 1.32851 1.01170 1.22325 0.96828 0.91593 0.96705 1.21677 0.99414 0.99818 0.94702 1.21559 0.95405 0.98138 0.99110 1.18669 0.95342 0.93999 0.88534 0.94440 1.21114 0.92713 1.44918 0.96434 0.93168 1.24909 0.95212 0.95216 0.98285 1.69953 1.17674 1.46892 1.17960 0.86706 0.82836 0.77726 0.81462 1.20860 1.21253 1.20068 1.22202 0.90937 0.97738 0.94346 1.21903 0.92901 0.93117 0.99623 1.19806 0.93660 0.94215 0.95387 1.22290 0.99993 0.97689 0.98681 1.22603 0.97070 0.95573 0.86221 1.87914 1.94470 1.33808 1.14155 1.22569 0.96693 0.93081 0.89144 1.22226 1.00173 0.98524 0.97397 1.77195 1.01138 1.07877 1.25441 0.90828 0.89673 0.89693 0.81256 0.91253 0.90712 0.94365 0.92818 0.93727 0.92098 0.95308 0.90632 0.93128 0.92873 0.96047 0.88768 0.90558 0.90076 0.92831 0.88711 0.93045 0.88970 0.90910 0.90671 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.00 11.47 59.85 0.69 1.68 16 2 N -0.38 -5.27 4.01 -68.16 -0.27 -5.54 16 3 C 0.07 0.95 10.51 -17.23 -0.18 0.77 16 4 C -0.26 -3.84 3.80 -105.05 -0.40 -4.24 16 5 C 0.13 1.88 5.61 -4.97 -0.03 1.86 16 6 N -0.53 -9.47 4.86 -236.11 -1.15 -10.61 16 7 C 0.05 0.90 3.85 -3.83 -0.01 0.89 16 8 C -0.12 -2.27 6.09 -26.65 -0.16 -2.43 16 9 C -0.10 -2.44 5.07 -26.61 -0.13 -2.58 16 10 C 0.05 1.33 2.15 -91.69 -0.20 1.13 16 11 H 0.04 1.05 8.14 -51.93 -0.42 0.63 16 12 C -0.51 -14.08 8.51 -34.44 -0.29 -14.37 16 13 H 0.05 1.37 7.76 -52.49 -0.41 0.97 16 14 C 0.07 1.81 5.25 -17.82 -0.09 1.72 16 15 N -0.89 -25.47 11.94 55.43 0.66 -24.81 16 16 Si 0.88 21.34 29.54 -169.99 -5.02 16.32 16 17 H -0.28 -6.80 7.11 56.52 0.40 -6.39 16 18 H -0.29 -6.87 7.11 56.52 0.40 -6.47 16 19 H -0.28 -6.55 7.11 56.52 0.40 -6.15 16 20 C 0.07 1.57 3.77 -3.84 -0.01 1.55 16 21 C 0.09 1.37 5.14 -82.40 -0.42 0.95 16 22 C -0.01 -0.14 1.66 -91.59 -0.15 -0.29 16 23 C -0.15 -1.95 5.11 -26.59 -0.14 -2.08 16 24 C 0.06 0.71 6.84 37.21 0.25 0.96 16 25 O -0.38 -4.73 10.77 -35.23 -0.38 -5.11 16 26 C 0.06 0.62 6.84 37.21 0.25 0.88 16 27 C -0.14 -1.61 5.40 -26.59 -0.14 -1.75 16 28 N -0.29 -4.64 12.54 33.67 0.42 -4.22 16 29 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 30 H 0.08 0.72 8.14 -51.93 -0.42 0.30 16 31 H 0.08 0.58 8.14 -51.92 -0.42 0.16 16 32 H 0.17 2.00 8.06 -52.48 -0.42 1.58 16 33 H 0.07 0.92 7.36 -51.93 -0.38 0.53 16 34 H 0.07 1.03 8.14 -51.93 -0.42 0.61 16 35 H 0.04 0.66 3.63 -51.93 -0.19 0.47 16 36 H 0.05 0.79 7.09 -51.93 -0.37 0.43 16 37 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 39 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 40 H 0.08 1.99 6.73 -51.92 -0.35 1.64 16 41 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 42 H 0.05 1.11 8.12 -51.93 -0.42 0.69 16 43 H 0.02 0.48 6.73 -51.93 -0.35 0.13 16 44 H 0.09 1.20 4.63 -51.93 -0.24 0.96 16 45 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 46 H 0.08 1.19 6.45 -51.93 -0.34 0.85 16 47 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 48 H 0.09 0.98 8.14 -51.93 -0.42 0.56 16 49 H 0.05 0.46 8.14 -51.93 -0.42 0.04 16 50 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 51 H 0.07 0.74 8.14 -51.93 -0.42 0.32 16 52 H 0.07 0.94 8.14 -51.93 -0.42 0.51 16 LS Contribution 389.07 15.07 5.86 5.86 Total: -1.00 -31.55 389.07 -9.99 -41.54 By element: Atomic # 1 Polarization: 10.87 SS G_CDS: -8.94 Total: 1.93 kcal Atomic # 6 Polarization: -14.18 SS G_CDS: -1.18 Total: -15.36 kcal Atomic # 7 Polarization: -44.85 SS G_CDS: -0.34 Total: -45.19 kcal Atomic # 8 Polarization: -4.73 SS G_CDS: -0.38 Total: -5.11 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.32 kcal Total LS contribution 5.86 Total: 5.86 kcal Total: -31.55 -9.99 -41.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364993412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.133 kcal (2) G-P(sol) polarization free energy of solvation -31.545 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 32.588 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.539 kcal (6) G-S(sol) free energy of system = (1) + (5) 22.594 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds