Wall clock time and date at job start Tue Mar 31 2020 18:38:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.34945 * 126.04019 * 2 1 4 4 C 1.35308 * 107.74876 * 179.97438 * 3 2 1 5 5 C 1.50705 * 126.04429 * 180.02562 * 4 3 2 6 6 N 1.46906 * 109.46692 * 263.83946 * 5 4 3 7 7 C 1.46847 * 110.99571 * 284.84739 * 6 5 4 8 8 C 1.53042 * 109.51852 * 185.84395 * 7 6 5 9 9 C 1.53124 * 109.27559 * 300.82148 * 8 7 6 10 10 C 1.53117 * 109.16198 * 57.65686 * 9 8 7 11 11 H 1.08998 * 109.50464 * 62.32790 * 10 9 8 12 12 C 1.50701 * 109.50235 * 182.40353 * 10 9 8 13 13 H 1.08001 * 120.00371 * 116.00012 * 12 10 9 14 14 C 1.37882 * 119.99952 * 296.00605 * 12 10 9 15 15 N 1.31507 * 119.99924 * 353.36719 * 14 12 10 16 16 Si 1.86800 * 120.00016 * 173.37768 * 14 12 10 17 17 H 1.48497 * 109.47135 * 265.04442 * 16 14 12 18 18 H 1.48496 * 109.47466 * 145.04351 * 16 14 12 19 19 H 1.48501 * 109.47104 * 25.04204 * 16 14 12 20 20 C 1.46844 * 111.00150 * 49.06075 * 6 5 4 21 21 C 1.39870 * 107.91849 * 0.26346 * 4 3 2 22 22 C 1.50700 * 125.89810 * 179.73222 * 21 4 3 23 23 C 1.53178 * 109.54649 * 234.94954 * 22 21 4 24 24 C 1.53092 * 109.16476 * 183.15400 * 23 22 21 25 25 O 1.42903 * 109.41318 * 57.61100 * 24 23 22 26 26 C 1.42905 * 114.09780 * 298.83748 * 25 24 23 27 27 C 1.53098 * 109.41188 * 61.15979 * 26 25 24 28 28 N 1.30840 * 108.20373 * 359.55792 * 21 4 3 29 29 H 1.09000 * 109.47540 * 89.99610 * 1 2 3 30 30 H 1.09002 * 109.47265 * 209.99874 * 1 2 3 31 31 H 1.09011 * 109.46853 * 329.99852 * 1 2 3 32 32 H 1.08005 * 126.12514 * 359.96424 * 3 2 1 33 33 H 1.08995 * 109.47597 * 143.84062 * 5 4 3 34 34 H 1.08995 * 109.46712 * 23.83311 * 5 4 3 35 35 H 1.08998 * 109.46546 * 65.83216 * 7 6 5 36 36 H 1.08995 * 109.46438 * 305.85777 * 7 6 5 37 37 H 1.08999 * 109.50040 * 180.88438 * 8 7 6 38 38 H 1.08993 * 109.50428 * 60.76170 * 8 7 6 39 39 H 1.09001 * 109.52290 * 297.74890 * 9 8 7 40 40 H 1.09008 * 109.57293 * 177.59571 * 9 8 7 41 41 H 0.97008 * 119.99927 * 180.02562 * 15 14 12 42 42 H 1.09003 * 109.46300 * 54.14143 * 20 6 5 43 43 H 1.09003 * 109.46004 * 294.17619 * 20 6 5 44 44 H 1.09003 * 109.54694 * 355.22217 * 22 21 4 45 45 H 1.09000 * 109.52100 * 303.06282 * 23 22 21 46 46 H 1.09000 * 109.52295 * 63.24563 * 23 22 21 47 47 H 1.09001 * 109.48189 * 297.62821 * 24 23 22 48 48 H 1.08996 * 109.47785 * 177.59014 * 24 23 22 49 49 H 1.09002 * 109.48195 * 301.17987 * 26 25 24 50 50 H 1.08997 * 109.48971 * 181.14543 * 26 25 24 51 51 H 1.09003 * 109.52004 * 182.48028 * 27 26 25 52 52 H 1.09002 * 109.51814 * 62.29869 * 27 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.2590 1.0912 0.0000 4 6 3.5437 0.6665 0.0006 5 6 4.7681 1.5452 0.0013 6 7 5.2532 1.7101 -1.3755 7 6 5.9333 0.4954 -1.8427 8 6 6.5502 0.7522 -3.2196 9 6 5.4455 1.1513 -4.2020 10 6 4.7213 2.3901 -3.6678 11 1 5.4228 3.2218 -3.6025 12 6 3.5942 2.7547 -4.5993 13 1 2.5719 2.7087 -4.2540 14 6 3.8680 3.1468 -5.8926 15 7 5.1131 3.3287 -6.2748 16 14 2.4704 3.4198 -7.1015 17 1 2.2556 2.1845 -7.8971 18 1 2.8153 4.5411 -8.0119 19 1 1.2291 3.7509 -6.3566 20 6 4.1575 2.0858 -2.2781 21 6 3.5346 -0.7322 -0.0052 22 6 4.7496 -1.6237 -0.0123 23 6 4.6689 -2.5903 -1.1978 24 6 5.8663 -3.5431 -1.1518 25 8 5.8711 -4.2400 0.0958 26 6 5.9925 -3.3903 1.2383 27 6 4.8002 -2.4313 1.2882 28 7 2.2890 -1.1328 0.0005 29 1 -0.3634 0.0001 -1.0276 30 1 -0.3634 -0.8900 0.5138 31 1 -0.3633 0.8901 0.5139 32 1 1.9282 2.1193 -0.0005 33 1 5.5467 1.0829 0.6080 34 1 4.5149 2.5206 0.4166 35 1 5.2131 -0.3196 -1.9139 36 1 6.7191 0.2250 -1.1374 37 1 7.0415 -0.1543 -3.5730 38 1 7.2806 1.5579 -3.1465 39 1 4.7357 0.3305 -4.3049 40 1 5.8849 1.3768 -5.1737 41 1 5.3057 3.6049 -7.1846 42 1 3.6535 2.9705 -1.8889 43 1 3.4456 1.2633 -2.3470 44 1 5.6489 -1.0138 -0.0980 45 1 3.7442 -3.1642 -1.1376 46 1 4.6882 -2.0259 -2.1301 47 1 6.7893 -2.9721 -1.2527 48 1 5.7914 -4.2608 -1.9687 49 1 6.9172 -2.8173 1.1686 50 1 6.0086 -3.9977 2.1432 51 1 4.9134 -1.7531 2.1341 52 1 3.8781 -3.0020 1.3987 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001364993412.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:38:48 Heat of formation + Delta-G solvation = 2.622581 kcal Electronic energy + Delta-G solvation = -31125.489424 eV Core-core repulsion = 27318.127081 eV Total energy + Delta-G solvation = -3807.362343 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.49811 -40.13182 -39.58649 -36.13784 -35.40741 -34.04139 -32.94074 -32.08500 -31.58965 -30.89111 -28.46308 -26.91339 -26.88567 -25.17314 -24.49663 -23.34787 -23.23757 -22.06796 -21.11889 -20.43811 -19.79804 -18.43231 -17.66856 -17.10444 -16.94269 -16.77685 -16.35995 -15.99670 -15.85569 -15.57494 -15.52565 -15.15815 -14.88729 -14.80342 -14.70477 -14.20688 -14.14784 -13.85182 -13.53508 -13.42018 -13.34060 -13.22625 -13.03915 -12.85107 -12.78331 -12.62675 -12.40295 -12.26942 -11.97907 -11.82065 -11.76151 -11.66339 -11.56212 -11.35770 -11.11727 -10.75854 -10.64192 -10.48758 -10.39365 -10.13012 -9.34873 -8.95424 -8.10753 -6.20311 0.95154 1.37333 1.38858 1.48242 1.67198 1.75635 2.41612 2.98834 3.19027 3.34948 3.51575 3.63186 3.89513 3.95159 4.02232 4.07760 4.22551 4.29216 4.32147 4.32565 4.33864 4.38019 4.48727 4.54194 4.58890 4.62611 4.65391 4.71113 4.73209 4.80770 4.83639 4.90252 4.91275 4.96558 5.00917 5.03031 5.12942 5.15352 5.20107 5.22914 5.24195 5.38011 5.46853 5.51952 5.63809 5.73658 6.00638 6.10597 6.15076 6.23630 6.28703 6.46940 6.52462 6.78782 6.93131 7.46247 8.97078 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011937 B = 0.004111 C = 0.003551 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2345.097648 B = 6809.270851 C = 7884.186634 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.096 3.904 2 N -0.382 5.382 3 C 0.063 3.937 4 C -0.275 4.275 5 C 0.132 3.868 6 N -0.536 5.536 7 C 0.058 3.942 8 C -0.112 4.112 9 C -0.095 4.095 10 C 0.052 3.948 11 H 0.000 1.000 12 C -0.532 4.532 13 H 0.046 0.954 14 C 0.018 3.982 15 N -0.915 5.915 16 Si 0.946 3.054 17 H -0.280 1.280 18 H -0.282 1.282 19 H -0.268 1.268 20 C 0.099 3.901 21 C 0.085 3.915 22 C -0.009 4.009 23 C -0.142 4.142 24 C 0.065 3.935 25 O -0.401 6.401 26 C 0.060 3.940 27 C -0.136 4.136 28 N -0.325 5.325 29 H 0.072 0.928 30 H 0.093 0.907 31 H 0.114 0.886 32 H 0.190 0.810 33 H 0.091 0.909 34 H 0.085 0.915 35 H 0.038 0.962 36 H 0.087 0.913 37 H 0.068 0.932 38 H 0.051 0.949 39 H 0.016 0.984 40 H 0.040 0.960 41 H 0.260 0.740 42 H 0.051 0.949 43 H 0.007 0.993 44 H 0.100 0.900 45 H 0.056 0.944 46 H 0.062 0.938 47 H 0.067 0.933 48 H 0.101 0.899 49 H 0.068 0.932 50 H 0.110 0.890 51 H 0.085 0.915 52 H 0.056 0.944 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.727 -9.859 17.450 20.117 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.044 4.044 2 N -0.163 5.163 3 C -0.084 4.084 4 C -0.288 4.288 5 C 0.003 3.997 6 N -0.258 5.258 7 C -0.069 4.069 8 C -0.150 4.150 9 C -0.134 4.134 10 C 0.033 3.967 11 H 0.018 0.982 12 C -0.571 4.571 13 H 0.064 0.936 14 C -0.181 4.181 15 N -0.554 5.554 16 Si 0.772 3.228 17 H -0.206 1.206 18 H -0.207 1.207 19 H -0.192 1.192 20 C -0.029 4.029 21 C -0.081 4.081 22 C -0.029 4.029 23 C -0.180 4.180 24 C -0.012 4.012 25 O -0.320 6.320 26 C -0.017 4.017 27 C -0.175 4.175 28 N -0.148 5.148 29 H 0.090 0.910 30 H 0.112 0.888 31 H 0.133 0.867 32 H 0.207 0.793 33 H 0.109 0.891 34 H 0.103 0.897 35 H 0.056 0.944 36 H 0.106 0.894 37 H 0.087 0.913 38 H 0.070 0.930 39 H 0.035 0.965 40 H 0.059 0.941 41 H 0.069 0.931 42 H 0.069 0.931 43 H 0.025 0.975 44 H 0.118 0.882 45 H 0.075 0.925 46 H 0.081 0.919 47 H 0.086 0.914 48 H 0.119 0.881 49 H 0.086 0.914 50 H 0.128 0.872 51 H 0.103 0.897 52 H 0.075 0.925 Dipole moment (debyes) X Y Z Total from point charges -2.278 -10.603 17.319 20.434 hybrid contribution -1.230 0.849 -1.392 2.043 sum -3.508 -9.754 15.927 19.002 Atomic orbital electron populations 1.22111 0.72456 1.05925 1.03893 1.48676 1.07621 1.03363 1.56681 1.22743 0.90889 0.94166 1.00629 1.20897 0.96465 0.94079 1.17326 1.20619 0.91700 0.97636 0.89706 1.62346 1.27568 1.33688 1.02228 1.22326 0.97505 0.91154 0.95924 1.21603 0.97765 1.00473 0.95133 1.21359 0.96269 0.97077 0.98673 1.18596 0.94103 0.93197 0.90833 0.98177 1.21474 0.93218 1.44997 0.97406 0.93619 1.25647 0.97456 0.95060 0.99943 1.70077 1.19463 1.47568 1.18288 0.85736 0.80190 0.77668 0.79238 1.20564 1.20728 1.19235 1.21740 0.91218 0.97076 0.92842 1.22238 0.93283 0.93528 0.99096 1.19859 0.93001 0.94054 0.96011 1.22186 1.00054 0.97732 0.98043 1.22619 0.96640 0.95487 0.86442 1.87901 1.94508 1.34753 1.14805 1.22750 0.96683 0.93145 0.89091 1.22157 0.99963 0.98525 0.96844 1.77144 1.01871 1.09193 1.26570 0.90956 0.88808 0.86722 0.79349 0.89077 0.89704 0.94357 0.89438 0.91335 0.92980 0.96490 0.94109 0.93119 0.93080 0.97467 0.88203 0.92484 0.91938 0.91443 0.88066 0.91371 0.87167 0.89656 0.92477 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.10 1.69 11.47 127.77 1.47 3.16 16 2 N -0.38 -10.25 4.01 -369.55 -1.48 -11.74 16 3 C 0.06 1.69 10.51 83.54 0.88 2.57 16 4 C -0.27 -7.79 3.80 -20.14 -0.08 -7.87 16 5 C 0.13 3.57 5.61 85.56 0.48 4.05 16 6 N -0.54 -18.48 4.86 -900.92 -4.38 -22.85 16 7 C 0.06 1.87 3.85 86.33 0.33 2.20 16 8 C -0.11 -4.22 6.09 30.65 0.19 -4.04 16 9 C -0.10 -4.61 5.07 30.67 0.16 -4.45 16 10 C 0.05 2.64 2.15 -11.49 -0.02 2.62 16 11 H 0.00 0.00 8.14 -2.39 -0.02 -0.02 16 12 C -0.53 -29.91 8.51 25.60 0.22 -29.69 16 13 H 0.05 2.54 7.76 -2.91 -0.02 2.52 16 14 C 0.02 1.01 5.25 84.66 0.44 1.46 16 15 N -0.91 -53.97 11.94 21.45 0.26 -53.72 16 16 Si 0.95 44.26 29.54 68.60 2.03 46.28 16 17 H -0.28 -12.90 7.11 99.48 0.71 -12.19 16 18 H -0.28 -12.88 7.11 99.48 0.71 -12.18 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.39 16 20 C 0.10 4.16 3.77 86.33 0.33 4.49 16 21 C 0.08 2.45 5.14 43.10 0.22 2.67 16 22 C -0.01 -0.22 1.66 -11.42 -0.02 -0.24 16 23 C -0.14 -3.63 5.11 30.68 0.16 -3.48 16 24 C 0.06 1.37 6.84 72.01 0.49 1.87 16 25 O -0.40 -9.06 10.77 -148.98 -1.60 -10.66 16 26 C 0.06 1.04 6.84 72.01 0.49 1.53 16 27 C -0.14 -2.77 5.40 30.69 0.17 -2.61 16 28 N -0.33 -10.10 12.54 -47.38 -0.59 -10.69 16 29 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 30 H 0.09 1.47 8.14 -2.39 -0.02 1.45 16 31 H 0.11 1.30 8.14 -2.38 -0.02 1.28 16 32 H 0.19 4.11 8.06 -2.91 -0.02 4.09 16 33 H 0.09 2.08 7.36 -2.39 -0.02 2.06 16 34 H 0.08 2.13 8.14 -2.39 -0.02 2.11 16 35 H 0.04 1.26 3.63 -2.39 -0.01 1.26 16 36 H 0.09 2.27 7.09 -2.39 -0.02 2.25 16 37 H 0.07 2.24 8.14 -2.39 -0.02 2.22 16 38 H 0.05 2.05 8.14 -2.39 -0.02 2.03 16 39 H 0.02 0.81 8.14 -2.39 -0.02 0.80 16 40 H 0.04 2.22 6.73 -2.38 -0.02 2.20 16 41 H 0.26 14.57 8.31 -92.70 -0.77 13.80 16 42 H 0.05 2.13 8.12 -2.39 -0.02 2.11 16 43 H 0.01 0.32 6.73 -2.39 -0.02 0.30 16 44 H 0.10 2.25 4.63 -2.39 -0.01 2.24 16 45 H 0.06 1.65 8.14 -2.39 -0.02 1.64 16 46 H 0.06 1.82 6.45 -2.39 -0.02 1.80 16 47 H 0.07 1.25 8.14 -2.39 -0.02 1.23 16 48 H 0.10 1.97 8.14 -2.39 -0.02 1.95 16 49 H 0.07 0.98 8.14 -2.39 -0.02 0.96 16 50 H 0.11 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 52 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 Total: -1.00 -70.00 389.07 1.01 -68.99 By element: Atomic # 1 Polarization: 19.26 SS G_CDS: 0.89 Total: 20.15 kcal Atomic # 6 Polarization: -31.66 SS G_CDS: 5.90 Total: -25.76 kcal Atomic # 7 Polarization: -92.80 SS G_CDS: -6.20 Total: -99.00 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: -1.60 Total: -10.66 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 2.03 Total: 46.28 kcal Total: -70.00 1.01 -68.99 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001364993412.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.608 kcal (2) G-P(sol) polarization free energy of solvation -69.997 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.611 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.012 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.985 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.623 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds