Wall clock time and date at job start Tue Mar 31 2020 18:20:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46501 * 109.47190 * 2 1 4 4 C 1.36936 * 120.00183 * 275.30637 * 3 2 1 5 5 H 1.08001 * 119.99534 * 37.57619 * 4 3 2 6 6 C 1.38809 * 119.99877 * 217.57345 * 4 3 2 7 7 N 1.31623 * 120.00252 * 21.43838 * 6 4 3 8 8 Si 1.86799 * 119.99711 * 201.43031 * 6 4 3 9 9 H 1.48491 * 109.47567 * 0.02562 * 8 6 4 10 10 H 1.48503 * 109.46942 * 120.00884 * 8 6 4 11 11 H 1.48505 * 109.47285 * 240.00112 * 8 6 4 12 12 C 1.46501 * 119.99855 * 95.30664 * 3 2 1 13 13 C 1.53003 * 109.47137 * 270.00166 * 12 3 2 14 14 C 1.53008 * 109.47045 * 180.02562 * 13 12 3 15 15 N 1.46497 * 109.46875 * 179.97438 * 14 13 12 16 16 C 1.34776 * 119.99652 * 179.97438 * 15 14 13 17 17 O 1.21513 * 120.00304 * 0.02562 * 16 15 14 18 18 C 1.48171 * 119.99990 * 180.02562 * 16 15 14 19 19 C 1.39305 * 119.72382 * 180.02562 * 18 16 15 20 20 C 1.38596 * 119.05849 * 179.76720 * 19 18 16 21 21 C 1.38623 * 118.48577 * 0.47399 * 20 19 18 22 22 C 1.50707 * 120.32295 * 179.75232 * 21 20 19 23 23 C 1.52999 * 109.47116 * 179.72259 * 22 21 20 24 24 C 1.52989 * 109.47294 * 299.72873 * 22 21 20 25 25 C 1.53002 * 109.46875 * 59.72625 * 22 21 20 26 26 C 1.38560 * 119.35598 * 359.48392 * 21 20 19 27 27 N 1.31521 * 120.90125 * 0.29429 * 26 21 20 28 28 H 1.08995 * 109.47547 * 179.97438 * 1 2 3 29 29 H 1.08996 * 109.47144 * 300.00310 * 1 2 3 30 30 H 1.09006 * 109.46923 * 59.99914 * 1 2 3 31 31 H 1.08996 * 109.47144 * 239.99690 * 2 1 3 32 32 H 1.09005 * 109.46433 * 119.99889 * 2 1 3 33 33 H 0.96998 * 120.00362 * 179.97438 * 7 6 4 34 34 H 1.09000 * 109.47282 * 150.00149 * 12 3 2 35 35 H 1.09001 * 109.47180 * 29.99807 * 12 3 2 36 36 H 1.08997 * 109.47164 * 60.00351 * 13 12 3 37 37 H 1.08996 * 109.46945 * 299.99435 * 13 12 3 38 38 H 1.09003 * 109.46641 * 59.99772 * 14 13 12 39 39 H 1.09003 * 109.47074 * 300.00135 * 14 13 12 40 40 H 0.96997 * 120.00058 * 0.02562 * 15 14 13 41 41 H 1.07996 * 120.47359 * 0.02562 * 19 18 16 42 42 H 1.08002 * 120.75681 * 180.25390 * 20 19 18 43 43 H 1.09000 * 109.46837 * 60.00488 * 23 22 21 44 44 H 1.08998 * 109.47342 * 180.02562 * 23 22 21 45 45 H 1.09000 * 109.47339 * 300.00348 * 23 22 21 46 46 H 1.09002 * 109.47472 * 59.99591 * 24 22 21 47 47 H 1.08998 * 109.47181 * 180.02562 * 24 22 21 48 48 H 1.09000 * 109.47076 * 299.99767 * 24 22 21 49 49 H 1.09006 * 109.46828 * 60.00209 * 25 22 21 50 50 H 1.09001 * 109.47224 * 179.97438 * 25 22 21 51 51 H 1.08993 * 109.47407 * 300.00169 * 25 22 21 52 52 H 1.07999 * 119.55220 * 180.27738 * 26 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0633 -1.1808 5 1 1.4106 1.9278 -1.9627 6 6 3.2112 2.9290 -1.3727 7 7 4.3028 2.7980 -0.6489 8 14 3.0994 4.2796 -2.6582 9 1 1.7774 4.2142 -3.3313 10 1 3.2551 5.6023 -2.0013 11 1 4.1768 4.0965 -3.6637 12 6 2.3732 2.0327 1.2633 13 6 1.1425 2.7382 1.8365 14 6 1.5132 3.4192 3.1557 15 7 0.3350 4.0952 3.7042 16 6 0.4248 4.7663 4.8695 17 8 1.4830 4.8109 5.4650 18 6 -0.7670 5.4496 5.4247 19 6 -0.6676 6.1420 6.6294 20 6 -1.7898 6.7802 7.1336 21 6 -2.9752 6.6953 6.4200 22 6 -4.2220 7.3689 6.9330 23 6 -5.3733 7.1231 5.9557 24 6 -4.5850 6.7943 8.3036 25 6 -3.9734 8.8732 7.0602 26 6 -3.0014 5.9898 5.2277 27 7 -1.9202 5.3972 4.7697 28 1 -0.3634 -1.0276 -0.0005 29 1 -0.3633 0.5139 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 1.8933 -0.5139 -0.8899 32 1 1.8932 -0.5139 0.8901 33 1 5.0493 3.4027 -0.7832 34 1 3.1616 2.7641 1.0861 35 1 2.7254 1.2833 1.9722 36 1 0.3541 2.0068 2.0139 37 1 0.7903 3.4876 1.1278 38 1 2.3016 4.1506 2.9779 39 1 1.8658 2.6701 3.8647 40 1 -0.5099 4.0593 3.2290 41 1 0.2716 6.1844 7.1608 42 1 -1.7426 7.3283 8.0630 43 1 -5.5504 6.0515 5.8651 44 1 -6.2749 7.6107 6.3265 45 1 -5.1147 7.5326 4.9792 46 1 -3.7647 6.9693 8.9999 47 1 -5.4870 7.2811 8.6744 48 1 -4.7621 5.7226 8.2130 49 1 -3.7148 9.2826 6.0836 50 1 -4.8752 9.3605 7.4308 51 1 -3.1532 9.0483 7.7563 52 1 -3.9221 5.9254 4.6670 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479843969.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:56 Heat of formation + Delta-G solvation = -22.151385 kcal Electronic energy + Delta-G solvation = -28208.418759 eV Core-core repulsion = 24399.982136 eV Total energy + Delta-G solvation = -3808.436623 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.88854 -40.39719 -38.22197 -37.76287 -36.28278 -33.82069 -33.46623 -32.86058 -31.54190 -30.18103 -28.45944 -28.09728 -27.32823 -25.89867 -24.78616 -24.21888 -22.60016 -22.17673 -21.75772 -20.35826 -19.18712 -18.63633 -17.85748 -17.08584 -16.77466 -16.67868 -16.48447 -15.93917 -15.90439 -15.53986 -15.38733 -15.00314 -14.99028 -14.67835 -14.37107 -14.19214 -14.15957 -14.06279 -13.71037 -13.25526 -13.19993 -13.13216 -12.88188 -12.78409 -12.74069 -12.59046 -12.52890 -12.32649 -12.14598 -12.08931 -11.93658 -11.91850 -11.72084 -11.48898 -11.36994 -11.24444 -10.87880 -10.52023 -10.49672 -10.28678 -9.96208 -8.54736 -7.80808 -5.44767 -0.43981 0.19814 1.43333 1.47305 1.56750 1.62274 2.02326 2.50771 2.78186 3.05639 3.24598 3.53116 3.65649 3.67080 3.82462 3.91056 4.05411 4.08548 4.13222 4.25007 4.28519 4.44504 4.46628 4.53213 4.69893 4.72248 4.75314 4.78504 4.80800 4.88381 4.91539 4.92146 4.96819 4.99145 5.03031 5.05501 5.11836 5.15424 5.17595 5.32555 5.33219 5.34899 5.44020 5.44554 5.47853 5.57143 5.60764 5.70086 5.83684 6.34631 6.48729 6.74584 7.06320 7.19061 7.88859 8.41507 9.14085 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.015079 B = 0.002158 C = 0.002140 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1856.403858 B =12973.066461 C =13083.232643 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.134 3.866 3 N -0.601 5.601 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.037 4.037 7 N -0.918 5.918 8 Si 0.953 3.047 9 H -0.267 1.267 10 H -0.291 1.291 11 H -0.291 1.291 12 C 0.152 3.848 13 C -0.123 4.123 14 C 0.131 3.869 15 N -0.698 5.698 16 C 0.561 3.439 17 O -0.574 6.574 18 C 0.049 3.951 19 C -0.113 4.113 20 C -0.074 4.074 21 C -0.090 4.090 22 C -0.024 4.024 23 C -0.151 4.151 24 C -0.139 4.139 25 C -0.140 4.140 26 C 0.088 3.912 27 N -0.472 5.472 28 H 0.065 0.935 29 H 0.049 0.951 30 H 0.036 0.964 31 H 0.030 0.970 32 H 0.045 0.955 33 H 0.251 0.749 34 H 0.061 0.939 35 H 0.030 0.970 36 H 0.068 0.932 37 H 0.050 0.950 38 H 0.049 0.951 39 H 0.066 0.934 40 H 0.416 0.584 41 H 0.146 0.854 42 H 0.170 0.830 43 H 0.063 0.937 44 H 0.075 0.925 45 H 0.061 0.939 46 H 0.062 0.938 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.050 0.950 50 H 0.076 0.924 51 H 0.062 0.938 52 H 0.185 0.815 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -22.060 10.153 19.310 31.026 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C 0.009 3.991 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.235 4.235 7 N -0.562 5.562 8 Si 0.782 3.218 9 H -0.191 1.191 10 H -0.218 1.218 11 H -0.218 1.218 12 C 0.025 3.975 13 C -0.163 4.163 14 C 0.007 3.993 15 N -0.349 5.349 16 C 0.347 3.653 17 O -0.454 6.454 18 C -0.088 4.088 19 C -0.134 4.134 20 C -0.100 4.100 21 C -0.092 4.092 22 C -0.025 4.025 23 C -0.208 4.208 24 C -0.197 4.197 25 C -0.198 4.198 26 C -0.071 4.071 27 N -0.183 5.183 28 H 0.084 0.916 29 H 0.068 0.932 30 H 0.055 0.945 31 H 0.049 0.951 32 H 0.064 0.936 33 H 0.060 0.940 34 H 0.079 0.921 35 H 0.048 0.952 36 H 0.087 0.913 37 H 0.069 0.931 38 H 0.067 0.933 39 H 0.085 0.915 40 H 0.253 0.747 41 H 0.164 0.836 42 H 0.187 0.813 43 H 0.082 0.918 44 H 0.094 0.906 45 H 0.080 0.920 46 H 0.081 0.919 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.069 0.931 50 H 0.095 0.905 51 H 0.081 0.919 52 H 0.202 0.798 Dipole moment (debyes) X Y Z Total from point charges -21.125 9.724 18.874 29.951 hybrid contribution 0.393 0.973 -0.391 1.120 sum -20.732 10.697 18.483 29.764 Atomic orbital electron populations 1.22176 0.97370 1.00780 1.00760 1.21000 0.93755 0.85664 0.98703 1.43990 1.76426 1.09606 1.02252 1.19200 1.04027 1.21176 0.94781 0.92741 1.25853 0.94070 1.03350 1.00196 1.70132 1.03791 1.38076 1.44173 0.85440 0.77770 0.79563 0.79075 1.19087 1.21815 1.21753 1.20688 0.95058 0.96150 0.85613 1.22180 1.00841 0.99484 0.93777 1.21260 0.87169 0.95700 0.95199 1.45905 1.14716 1.51688 1.22548 1.18378 0.87339 0.78539 0.81019 1.90744 1.30355 1.63112 1.61164 1.20905 0.92141 1.00713 0.95029 1.22216 1.01162 0.95285 0.94743 1.21745 0.90664 0.96907 1.00646 1.21424 0.96665 0.96328 0.94806 1.19580 0.90666 0.95513 0.96745 1.22033 0.97528 1.02494 0.98795 1.21918 1.02549 1.00882 0.94311 1.21929 1.02913 0.92838 1.02074 1.23315 0.96388 0.93113 0.94332 1.67524 0.98999 1.18361 1.33390 0.91567 0.93221 0.94520 0.95122 0.93638 0.94008 0.92136 0.95158 0.91305 0.93140 0.93272 0.91543 0.74659 0.83641 0.81304 0.91826 0.90566 0.92014 0.91924 0.90516 0.92898 0.93077 0.90491 0.91917 0.79792 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.24 10.21 71.98 0.73 -4.50 16 2 C 0.13 5.61 6.44 86.38 0.56 6.17 16 3 N -0.60 -29.87 2.43 -701.99 -1.71 -31.58 16 4 C -0.26 -14.32 9.45 84.03 0.79 -13.53 16 5 H 0.05 2.99 7.92 -2.91 -0.02 2.97 16 6 C -0.04 -2.09 4.95 84.86 0.42 -1.67 16 7 N -0.92 -54.34 11.47 21.65 0.25 -54.09 16 8 Si 0.95 45.17 29.60 68.60 2.03 47.20 16 9 H -0.27 -12.07 7.11 99.48 0.71 -11.37 16 10 H -0.29 -13.86 7.11 99.48 0.71 -13.16 16 11 H -0.29 -13.72 7.11 99.48 0.71 -13.01 16 12 C 0.15 7.12 5.33 86.38 0.46 7.58 16 13 C -0.12 -4.74 5.65 30.60 0.17 -4.57 16 14 C 0.13 4.75 5.67 86.38 0.49 5.24 16 15 N -0.70 -22.75 5.55 -465.65 -2.58 -25.33 16 16 C 0.56 18.92 7.81 86.88 0.68 19.60 16 17 O -0.57 -22.70 16.32 -3.76 -0.06 -22.76 16 18 C 0.05 1.34 6.75 41.91 0.28 1.62 16 19 C -0.11 -2.49 9.63 22.61 0.22 -2.27 16 20 C -0.07 -1.11 8.84 22.45 0.20 -0.91 16 21 C -0.09 -1.26 4.77 -19.69 -0.09 -1.35 16 22 C -0.02 -0.20 0.86 -52.93 -0.05 -0.25 16 23 C -0.15 -1.04 7.14 71.98 0.51 -0.52 16 24 C -0.14 -0.94 8.29 71.98 0.60 -0.34 16 25 C -0.14 -1.00 8.29 71.98 0.60 -0.41 16 26 C 0.09 1.56 10.15 84.82 0.86 2.42 16 27 N -0.47 -11.56 9.54 -184.91 -1.76 -13.32 16 28 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 29 H 0.05 1.65 6.64 -2.39 -0.02 1.63 16 30 H 0.04 1.34 8.14 -2.38 -0.02 1.32 16 31 H 0.03 1.33 8.08 -2.39 -0.02 1.31 16 32 H 0.05 1.77 7.83 -2.38 -0.02 1.75 16 33 H 0.25 14.38 8.31 -92.71 -0.77 13.61 16 34 H 0.06 3.31 5.52 -2.39 -0.01 3.29 16 35 H 0.03 1.35 7.86 -2.39 -0.02 1.33 16 36 H 0.07 2.43 6.64 -2.39 -0.02 2.42 16 37 H 0.05 2.10 8.14 -2.39 -0.02 2.08 16 38 H 0.05 1.98 8.14 -2.39 -0.02 1.96 16 39 H 0.07 2.38 8.14 -2.39 -0.02 2.36 16 40 H 0.42 12.27 7.80 -92.71 -0.72 11.55 16 41 H 0.15 3.19 7.64 -2.91 -0.02 3.17 16 42 H 0.17 1.46 7.24 -2.91 -0.02 1.43 16 43 H 0.06 0.44 7.53 -2.39 -0.02 0.42 16 44 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 45 H 0.06 0.45 7.53 -2.39 -0.02 0.43 16 46 H 0.06 0.38 7.46 -2.39 -0.02 0.37 16 47 H 0.08 0.33 8.14 -2.39 -0.02 0.32 16 48 H 0.05 0.44 8.14 -2.39 -0.02 0.42 16 49 H 0.05 0.46 8.14 -2.38 -0.02 0.44 16 50 H 0.08 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.06 0.41 7.43 -2.39 -0.02 0.39 16 52 H 0.19 2.33 5.90 -2.91 -0.02 2.32 16 Total: -1.00 -69.04 415.24 3.77 -65.27 By element: Atomic # 1 Polarization: 22.13 SS G_CDS: 0.18 Total: 22.31 kcal Atomic # 6 Polarization: 4.88 SS G_CDS: 7.44 Total: 12.31 kcal Atomic # 7 Polarization: -118.51 SS G_CDS: -5.81 Total: -124.32 kcal Atomic # 8 Polarization: -22.70 SS G_CDS: -0.06 Total: -22.76 kcal Atomic # 14 Polarization: 45.17 SS G_CDS: 2.03 Total: 47.20 kcal Total: -69.04 3.77 -65.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479843969.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.115 kcal (2) G-P(sol) polarization free energy of solvation -69.041 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -25.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.774 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.267 kcal (6) G-S(sol) free energy of system = (1) + (5) -22.151 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds