Wall clock time and date at job start Tue Mar 31 2020 18:21:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.47174 * 2 1 4 4 C 1.36938 * 119.99710 * 272.15142 * 3 2 1 5 5 H 1.08005 * 120.00115 * 39.53989 * 4 3 2 6 6 C 1.38808 * 119.99854 * 219.53359 * 4 3 2 7 7 N 1.31625 * 120.00155 * 19.65077 * 6 4 3 8 8 Si 1.86806 * 119.99959 * 199.65484 * 6 4 3 9 9 H 1.48500 * 109.47006 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47173 * 119.99972 * 8 6 4 11 11 H 1.48503 * 109.46652 * 239.99918 * 8 6 4 12 12 C 1.46495 * 119.99934 * 92.15255 * 3 2 1 13 13 C 1.52999 * 109.47195 * 269.99970 * 12 3 2 14 14 C 1.53002 * 109.47554 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47311 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99625 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00249 * 356.51961 * 16 15 14 18 18 C 1.50702 * 119.99881 * 176.51891 * 16 15 14 19 19 H 1.09002 * 109.47134 * 49.85686 * 18 16 15 20 20 C 1.50694 * 109.47193 * 169.85658 * 18 16 15 21 21 C 1.38678 * 120.41963 * 239.72366 * 20 18 16 22 22 C 1.38623 * 118.42348 * 179.78359 * 21 20 18 23 23 C 1.38223 * 119.15760 * 0.51403 * 22 21 20 24 24 N 1.31855 * 120.76774 * 359.72465 * 23 22 21 25 25 C 1.31886 * 121.72202 * 359.97438 * 24 23 22 26 26 C 1.52999 * 109.47180 * 289.86188 * 18 16 15 27 27 C 1.53001 * 109.47224 * 185.34500 * 26 18 16 28 28 C 1.53000 * 109.47532 * 65.33783 * 26 18 16 29 29 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46853 * 299.99904 * 1 2 3 31 31 H 1.09004 * 109.46665 * 60.00162 * 1 2 3 32 32 H 1.09002 * 109.47062 * 239.99882 * 2 1 3 33 33 H 1.08994 * 109.47345 * 120.00154 * 2 1 3 34 34 H 0.97000 * 119.99824 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47207 * 149.99847 * 12 3 2 36 36 H 1.08997 * 109.47061 * 29.99604 * 12 3 2 37 37 H 1.08999 * 109.47143 * 59.99838 * 13 12 3 38 38 H 1.09004 * 109.47405 * 300.00396 * 13 12 3 39 39 H 1.08998 * 109.46665 * 60.00030 * 14 13 12 40 40 H 1.09001 * 109.46461 * 300.00059 * 14 13 12 41 41 H 0.97001 * 119.99753 * 0.02562 * 15 14 13 42 42 H 1.08008 * 120.78716 * 0.02562 * 21 20 18 43 43 H 1.07999 * 120.42307 * 180.21423 * 22 21 20 44 44 H 1.08010 * 119.62145 * 179.74903 * 23 22 21 45 45 H 1.07996 * 119.61561 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46823 * 305.33620 * 26 18 16 47 47 H 1.09004 * 109.46502 * 299.99317 * 27 26 18 48 48 H 1.08998 * 109.47330 * 59.99288 * 27 26 18 49 49 H 1.08999 * 109.47433 * 179.97438 * 27 26 18 50 50 H 1.08996 * 109.46667 * 180.94996 * 28 26 18 51 51 H 1.08993 * 109.46983 * 300.95513 * 28 26 18 52 52 H 1.09004 * 109.46405 * 60.95356 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2047 2.0416 -1.1851 5 1 1.4961 1.9159 -1.9905 6 6 3.3041 2.8726 -1.3513 7 7 4.3514 2.7437 -0.5645 8 14 3.2972 4.1739 -2.6915 9 1 2.0122 4.1135 -3.4334 10 1 3.4524 5.5172 -2.0779 11 1 4.4217 3.9248 -3.6289 12 6 2.3075 2.0559 1.2678 13 6 1.0492 2.7713 1.7633 14 6 1.3512 3.4765 3.0871 15 7 0.1464 4.1620 3.5613 16 6 0.1759 4.8544 4.7172 17 8 1.1807 4.8580 5.3965 18 6 -1.0396 5.6242 5.1657 19 1 -1.9166 4.9787 5.1175 20 6 -0.8405 6.0962 6.5829 21 6 -1.7158 5.7021 7.5837 22 6 -1.4911 6.1571 8.8737 23 6 -0.4160 6.9914 9.1158 24 7 0.3932 7.3498 8.1384 25 6 0.2134 6.9314 6.9007 26 6 -1.2447 6.8324 4.2497 27 6 -2.3966 7.6868 4.7828 28 6 -1.5787 6.3503 2.8366 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.1194 3.3247 -0.6804 35 1 3.1045 2.7843 1.1183 36 1 2.6221 1.3199 2.0076 37 1 0.2522 2.0429 1.9129 38 1 0.7344 3.5074 1.0235 39 1 2.1480 4.2050 2.9371 40 1 1.6660 2.7407 3.8271 41 1 -0.6727 4.1169 3.0436 42 1 -2.5505 5.0528 7.3641 43 1 -2.1506 5.8675 9.6785 44 1 -0.2363 7.3537 10.1174 45 1 0.8974 7.2459 6.1263 46 1 -0.3322 7.4281 4.2242 47 1 -3.3091 7.0911 4.8082 48 1 -2.1586 8.0302 5.7895 49 1 -2.5425 8.5478 4.1305 50 1 -1.7083 7.2108 2.1803 51 1 -0.7656 5.7278 2.4634 52 1 -2.5004 5.7688 2.8596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001479858746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:43 Heat of formation + Delta-G solvation = 0.959136 kcal Electronic energy + Delta-G solvation = -29173.544645 eV Core-core repulsion = 25366.110170 eV Total energy + Delta-G solvation = -3807.434475 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.97165 -39.40760 -36.61107 -36.30631 -34.88373 -32.70310 -31.88029 -31.58724 -31.26992 -28.76489 -27.75130 -27.27809 -25.15897 -23.80865 -23.65495 -22.65034 -21.23569 -20.88237 -20.28089 -19.74835 -17.39762 -17.28007 -16.76844 -16.11131 -16.02398 -15.55409 -15.21423 -14.94940 -14.53881 -14.42512 -14.10145 -13.78257 -13.58599 -13.47071 -13.30435 -13.22924 -12.97748 -12.78745 -12.55332 -12.39913 -12.35206 -12.12988 -11.64270 -11.57862 -11.24809 -11.19406 -11.15388 -11.03987 -10.97077 -10.78913 -10.57900 -10.45207 -10.09918 -10.02576 -9.72974 -9.57298 -9.55963 -9.52911 -9.07414 -8.82651 -8.49553 -6.55092 -5.79346 -3.41929 0.95735 1.13698 2.65634 3.24648 3.33068 3.41969 3.43645 3.73233 4.15091 4.41202 4.45709 4.47171 4.57322 4.68385 4.82250 4.86039 4.90060 5.03806 5.14532 5.24896 5.32876 5.36629 5.39084 5.40135 5.58620 5.62235 5.65110 5.66912 5.82349 5.83924 5.90557 5.95642 5.96336 6.04249 6.07544 6.11728 6.26831 6.33953 6.40886 6.45703 6.55139 6.56908 6.73826 6.76302 6.90295 7.07658 7.15999 7.60305 7.66029 7.81397 7.87099 8.29140 8.52825 9.19190 9.80251 10.40558 11.19737 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002590 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.849058 B =10806.163010 C =11182.193362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.140 3.860 3 N -0.584 5.584 4 C -0.261 4.261 5 H 0.058 0.942 6 C 0.014 3.986 7 N -0.886 5.886 8 Si 0.894 3.106 9 H -0.276 1.276 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.153 3.847 13 C -0.147 4.147 14 C 0.118 3.882 15 N -0.723 5.723 16 C 0.513 3.487 17 O -0.535 6.535 18 C -0.061 4.061 19 H 0.102 0.898 20 C -0.113 4.113 21 C -0.071 4.071 22 C -0.178 4.178 23 C 0.093 3.907 24 N -0.486 5.486 25 C 0.138 3.862 26 C -0.083 4.083 27 C -0.144 4.144 28 C -0.168 4.168 29 H 0.034 0.966 30 H 0.043 0.957 31 H 0.048 0.952 32 H 0.044 0.956 33 H 0.031 0.969 34 H 0.255 0.745 35 H 0.093 0.907 36 H 0.024 0.976 37 H 0.051 0.949 38 H 0.064 0.936 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.400 0.600 42 H 0.132 0.868 43 H 0.133 0.867 44 H 0.153 0.847 45 H 0.152 0.848 46 H 0.079 0.921 47 H 0.057 0.943 48 H 0.055 0.945 49 H 0.059 0.941 50 H 0.064 0.936 51 H 0.072 0.928 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.269 7.015 14.401 22.831 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C 0.014 3.986 3 N -0.305 5.305 4 C -0.391 4.391 5 H 0.076 0.924 6 C -0.186 4.186 7 N -0.528 5.528 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.026 3.974 13 C -0.187 4.187 14 C -0.005 4.005 15 N -0.376 5.376 16 C 0.299 3.701 17 O -0.411 6.411 18 C -0.083 4.083 19 H 0.120 0.880 20 C -0.115 4.115 21 C -0.097 4.097 22 C -0.198 4.198 23 C -0.064 4.064 24 N -0.194 5.194 25 C -0.019 4.019 26 C -0.102 4.102 27 C -0.201 4.201 28 C -0.225 4.225 29 H 0.054 0.946 30 H 0.062 0.938 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.050 0.950 34 H 0.065 0.935 35 H 0.111 0.889 36 H 0.043 0.957 37 H 0.070 0.930 38 H 0.083 0.917 39 H 0.085 0.915 40 H 0.080 0.920 41 H 0.237 0.763 42 H 0.150 0.850 43 H 0.151 0.849 44 H 0.170 0.830 45 H 0.170 0.830 46 H 0.097 0.903 47 H 0.076 0.924 48 H 0.074 0.926 49 H 0.079 0.921 50 H 0.084 0.916 51 H 0.091 0.909 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -14.625 7.622 15.043 22.322 hybrid contribution -1.149 0.018 -1.074 1.573 sum -15.775 7.639 13.968 22.412 Atomic orbital electron populations 1.22390 1.00258 0.98894 1.01040 1.20854 0.91556 0.87475 0.98754 1.43726 1.76489 1.08150 1.02102 1.18999 1.03925 1.23293 0.92845 0.92421 1.25260 0.94335 1.01236 0.97806 1.69997 1.04119 1.38318 1.40365 0.86370 0.77639 0.81917 0.81694 1.20095 1.21391 1.21596 1.20759 0.94373 0.96331 0.85979 1.22556 1.02565 0.99712 0.93890 1.21514 0.86434 0.96039 0.96530 1.46466 1.15422 1.52306 1.23406 1.20333 0.89244 0.79524 0.81048 1.90733 1.33792 1.62612 1.53985 1.20384 0.98008 0.97670 0.92277 0.87981 1.20281 0.97139 0.99318 0.94774 1.21443 0.98220 0.97549 0.92480 1.22056 1.00065 1.00248 0.97402 1.22773 0.90825 0.94333 0.98423 1.67746 1.27867 1.23191 1.00610 1.22570 0.94013 0.91968 0.93373 1.21069 1.00147 0.94606 0.94331 1.21835 0.97572 0.99579 1.01117 1.22194 1.02400 1.02466 0.95449 0.94646 0.93803 0.93307 0.93707 0.95023 0.93538 0.88916 0.95714 0.93037 0.91727 0.91456 0.91985 0.76342 0.85043 0.84931 0.83013 0.83024 0.90299 0.92415 0.92599 0.92146 0.91645 0.90939 0.92131 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.90 10.23 37.16 0.38 -2.52 16 2 C 0.14 2.90 6.43 -4.04 -0.03 2.87 16 3 N -0.58 -13.99 2.41 -173.24 -0.42 -14.41 16 4 C -0.26 -6.89 9.45 -15.06 -0.14 -7.03 16 5 H 0.06 1.53 7.90 -52.48 -0.41 1.12 16 6 C 0.01 0.38 4.98 -17.43 -0.09 0.30 16 7 N -0.89 -25.05 11.50 55.49 0.64 -24.41 16 8 Si 0.89 21.05 29.60 -169.99 -5.03 16.02 16 9 H -0.28 -6.36 7.11 56.52 0.40 -5.95 16 10 H -0.29 -6.79 7.11 56.52 0.40 -6.38 16 11 H -0.29 -6.90 7.11 56.52 0.40 -6.49 16 12 C 0.15 3.39 5.33 -4.05 -0.02 3.37 16 13 C -0.15 -2.61 5.65 -26.73 -0.15 -2.76 16 14 C 0.12 1.91 5.68 -4.04 -0.02 1.89 16 15 N -0.72 -9.47 4.31 -60.29 -0.26 -9.73 16 16 C 0.51 7.01 6.85 -10.99 -0.08 6.94 16 17 O -0.53 -9.49 14.80 5.55 0.08 -9.41 16 18 C -0.06 -0.61 2.02 -92.93 -0.19 -0.80 16 19 H 0.10 0.80 7.93 -51.93 -0.41 0.38 16 20 C -0.11 -1.23 3.00 -104.49 -0.31 -1.55 16 21 C -0.07 -0.65 9.81 -39.28 -0.39 -1.03 16 22 C -0.18 -1.53 10.11 -39.44 -0.40 -1.93 16 23 C 0.09 0.95 11.18 -17.55 -0.20 0.75 16 24 N -0.49 -6.36 10.36 -13.25 -0.14 -6.50 16 25 C 0.14 1.78 9.05 -17.55 -0.16 1.62 16 26 C -0.08 -0.73 2.25 -90.62 -0.20 -0.93 16 27 C -0.14 -1.07 8.87 37.16 0.33 -0.74 16 28 C -0.17 -1.40 8.35 37.16 0.31 -1.09 16 29 H 0.03 0.53 8.14 -51.93 -0.42 0.10 16 30 H 0.04 0.73 6.41 -51.93 -0.33 0.40 16 31 H 0.05 0.89 8.14 -51.93 -0.42 0.47 16 32 H 0.04 0.96 8.06 -51.93 -0.42 0.54 16 33 H 0.03 0.62 7.87 -51.93 -0.41 0.21 16 34 H 0.25 6.96 8.31 -40.82 -0.34 6.62 16 35 H 0.09 2.37 5.59 -51.93 -0.29 2.08 16 36 H 0.02 0.53 7.88 -51.93 -0.41 0.12 16 37 H 0.05 0.86 6.41 -51.93 -0.33 0.53 16 38 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 39 H 0.07 1.21 8.14 -51.93 -0.42 0.78 16 40 H 0.06 1.04 8.14 -51.93 -0.42 0.62 16 41 H 0.40 4.30 6.38 -40.82 -0.26 4.03 16 42 H 0.13 0.87 8.00 -52.48 -0.42 0.45 16 43 H 0.13 0.75 8.06 -52.49 -0.42 0.33 16 44 H 0.15 1.11 8.06 -52.48 -0.42 0.69 16 45 H 0.15 2.03 7.36 -52.49 -0.39 1.65 16 46 H 0.08 0.79 7.61 -51.93 -0.40 0.39 16 47 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.05 0.46 7.03 -51.93 -0.37 0.10 16 49 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 50 H 0.06 0.53 8.14 -51.93 -0.42 0.10 16 51 H 0.07 0.72 5.21 -51.93 -0.27 0.45 16 52 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 LS Contribution 410.91 15.07 6.19 6.19 Total: -1.00 -31.62 410.91 -9.19 -40.81 By element: Atomic # 1 Polarization: 12.99 SS G_CDS: -8.90 Total: 4.09 kcal Atomic # 6 Polarization: -1.29 SS G_CDS: -1.35 Total: -2.64 kcal Atomic # 7 Polarization: -54.88 SS G_CDS: -0.18 Total: -55.05 kcal Atomic # 8 Polarization: -9.49 SS G_CDS: 0.08 Total: -9.41 kcal Atomic # 14 Polarization: 21.05 SS G_CDS: -5.03 Total: 16.02 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -31.62 -9.19 -40.81 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479858746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.765 kcal (2) G-P(sol) polarization free energy of solvation -31.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.145 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.186 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.959 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds