Wall clock time and date at job start Tue Mar 31 2020 18:21:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 N 1.46504 * 109.47174 * 2 1 4 4 C 1.36938 * 119.99710 * 272.15142 * 3 2 1 5 5 H 1.08005 * 120.00115 * 39.53989 * 4 3 2 6 6 C 1.38808 * 119.99854 * 219.53359 * 4 3 2 7 7 N 1.31625 * 120.00155 * 19.65077 * 6 4 3 8 8 Si 1.86806 * 119.99959 * 199.65484 * 6 4 3 9 9 H 1.48500 * 109.47006 * 359.97438 * 8 6 4 10 10 H 1.48499 * 109.47173 * 119.99972 * 8 6 4 11 11 H 1.48503 * 109.46652 * 239.99918 * 8 6 4 12 12 C 1.46495 * 119.99934 * 92.15255 * 3 2 1 13 13 C 1.52999 * 109.47195 * 269.99970 * 12 3 2 14 14 C 1.53002 * 109.47554 * 180.02562 * 13 12 3 15 15 N 1.46500 * 109.47311 * 179.97438 * 14 13 12 16 16 C 1.34775 * 119.99625 * 179.97438 * 15 14 13 17 17 O 1.21284 * 120.00249 * 356.51961 * 16 15 14 18 18 C 1.50702 * 119.99881 * 176.51891 * 16 15 14 19 19 H 1.09002 * 109.47134 * 49.85686 * 18 16 15 20 20 C 1.50694 * 109.47193 * 169.85658 * 18 16 15 21 21 C 1.38678 * 120.41963 * 239.72366 * 20 18 16 22 22 C 1.38623 * 118.42348 * 179.78359 * 21 20 18 23 23 C 1.38223 * 119.15760 * 0.51403 * 22 21 20 24 24 N 1.31855 * 120.76774 * 359.72465 * 23 22 21 25 25 C 1.31886 * 121.72202 * 359.97438 * 24 23 22 26 26 C 1.52999 * 109.47180 * 289.86188 * 18 16 15 27 27 C 1.53001 * 109.47224 * 185.34500 * 26 18 16 28 28 C 1.53000 * 109.47532 * 65.33783 * 26 18 16 29 29 H 1.08997 * 109.47080 * 179.97438 * 1 2 3 30 30 H 1.08993 * 109.46853 * 299.99904 * 1 2 3 31 31 H 1.09004 * 109.46665 * 60.00162 * 1 2 3 32 32 H 1.09002 * 109.47062 * 239.99882 * 2 1 3 33 33 H 1.08994 * 109.47345 * 120.00154 * 2 1 3 34 34 H 0.97000 * 119.99824 * 180.02562 * 7 6 4 35 35 H 1.08999 * 109.47207 * 149.99847 * 12 3 2 36 36 H 1.08997 * 109.47061 * 29.99604 * 12 3 2 37 37 H 1.08999 * 109.47143 * 59.99838 * 13 12 3 38 38 H 1.09004 * 109.47405 * 300.00396 * 13 12 3 39 39 H 1.08998 * 109.46665 * 60.00030 * 14 13 12 40 40 H 1.09001 * 109.46461 * 300.00059 * 14 13 12 41 41 H 0.97001 * 119.99753 * 0.02562 * 15 14 13 42 42 H 1.08008 * 120.78716 * 0.02562 * 21 20 18 43 43 H 1.07999 * 120.42307 * 180.21423 * 22 21 20 44 44 H 1.08010 * 119.62145 * 179.74903 * 23 22 21 45 45 H 1.07996 * 119.61561 * 180.02562 * 25 24 23 46 46 H 1.09004 * 109.46823 * 305.33620 * 26 18 16 47 47 H 1.09004 * 109.46502 * 299.99317 * 27 26 18 48 48 H 1.08998 * 109.47330 * 59.99288 * 27 26 18 49 49 H 1.08999 * 109.47433 * 179.97438 * 27 26 18 50 50 H 1.08996 * 109.46667 * 180.94996 * 28 26 18 51 51 H 1.08993 * 109.46983 * 300.95513 * 28 26 18 52 52 H 1.09004 * 109.46405 * 60.95356 * 28 26 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 7 2.0184 1.3813 0.0000 4 6 2.2047 2.0416 -1.1851 5 1 1.4961 1.9159 -1.9905 6 6 3.3041 2.8726 -1.3513 7 7 4.3514 2.7437 -0.5645 8 14 3.2972 4.1739 -2.6915 9 1 2.0122 4.1135 -3.4334 10 1 3.4524 5.5172 -2.0779 11 1 4.4217 3.9248 -3.6289 12 6 2.3075 2.0559 1.2678 13 6 1.0492 2.7713 1.7633 14 6 1.3512 3.4765 3.0871 15 7 0.1464 4.1620 3.5613 16 6 0.1759 4.8544 4.7172 17 8 1.1807 4.8580 5.3965 18 6 -1.0396 5.6242 5.1657 19 1 -1.9166 4.9787 5.1175 20 6 -0.8405 6.0962 6.5829 21 6 -1.7158 5.7021 7.5837 22 6 -1.4911 6.1571 8.8737 23 6 -0.4160 6.9914 9.1158 24 7 0.3932 7.3498 8.1384 25 6 0.2134 6.9314 6.9007 26 6 -1.2447 6.8324 4.2497 27 6 -2.3966 7.6868 4.7828 28 6 -1.5787 6.3503 2.8366 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5138 -0.8901 32 1 1.8934 -0.5139 -0.8900 33 1 1.8934 -0.5138 0.8899 34 1 5.1194 3.3247 -0.6804 35 1 3.1045 2.7843 1.1183 36 1 2.6221 1.3199 2.0076 37 1 0.2522 2.0429 1.9129 38 1 0.7344 3.5074 1.0235 39 1 2.1480 4.2050 2.9371 40 1 1.6660 2.7407 3.8271 41 1 -0.6727 4.1169 3.0436 42 1 -2.5505 5.0528 7.3641 43 1 -2.1506 5.8675 9.6785 44 1 -0.2363 7.3537 10.1174 45 1 0.8974 7.2459 6.1263 46 1 -0.3322 7.4281 4.2242 47 1 -3.3091 7.0911 4.8082 48 1 -2.1586 8.0302 5.7895 49 1 -2.5425 8.5478 4.1305 50 1 -1.7083 7.2108 2.1803 51 1 -0.7656 5.7278 2.4634 52 1 -2.5004 5.7688 2.8596 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001479858746.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:21:42 Heat of formation + Delta-G solvation = -16.928827 kcal Electronic energy + Delta-G solvation = -29174.320326 eV Core-core repulsion = 25366.110170 eV Total energy + Delta-G solvation = -3808.210155 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.86495 -40.39096 -38.20542 -37.26440 -36.25410 -33.81612 -33.47463 -32.73149 -32.30365 -30.34121 -28.78621 -27.93409 -26.83685 -25.23240 -24.59095 -23.50298 -22.62560 -22.08742 -21.75989 -20.80347 -18.63308 -18.35836 -18.05076 -17.13812 -17.05025 -16.94187 -16.54043 -16.08948 -15.84958 -15.66178 -15.27921 -15.09595 -14.88724 -14.45925 -14.36842 -14.22389 -14.01857 -13.93125 -13.74472 -13.43970 -13.23954 -13.18274 -13.00146 -12.86207 -12.79528 -12.70445 -12.58576 -12.29862 -12.13619 -12.04628 -11.92608 -11.83482 -11.70338 -11.45720 -11.21553 -10.95964 -10.59336 -10.50886 -10.36334 -10.05087 -9.86859 -8.51669 -7.79640 -5.47473 0.18091 0.39286 1.44099 1.47936 1.57258 1.57705 2.17693 2.51041 2.91853 3.25789 3.38426 3.60740 3.68101 3.69877 3.83710 4.01619 4.08065 4.10730 4.16331 4.21688 4.31827 4.36159 4.45806 4.48585 4.55798 4.65037 4.70831 4.74188 4.78659 4.81723 4.87732 4.89945 4.96112 5.00138 5.03526 5.05542 5.17940 5.20601 5.20793 5.29909 5.35064 5.39088 5.40752 5.43249 5.47524 5.61812 5.70527 5.81228 5.84815 6.49961 6.54120 7.07215 7.20064 7.22810 7.88957 8.42742 9.14443 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014971 B = 0.002590 C = 0.002503 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1869.849058 B =10806.163010 C =11182.193362 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.134 3.866 3 N -0.602 5.602 4 C -0.261 4.261 5 H 0.055 0.945 6 C -0.036 4.036 7 N -0.919 5.919 8 Si 0.954 3.046 9 H -0.264 1.264 10 H -0.291 1.291 11 H -0.293 1.293 12 C 0.153 3.847 13 C -0.122 4.122 14 C 0.132 3.868 15 N -0.711 5.711 16 C 0.511 3.489 17 O -0.581 6.581 18 C -0.049 4.049 19 H 0.137 0.863 20 C -0.120 4.120 21 C -0.070 4.070 22 C -0.168 4.168 23 C 0.078 3.922 24 N -0.522 5.522 25 C 0.111 3.889 26 C -0.079 4.079 27 C -0.136 4.136 28 C -0.166 4.166 29 H 0.064 0.936 30 H 0.052 0.948 31 H 0.037 0.963 32 H 0.030 0.970 33 H 0.040 0.960 34 H 0.250 0.750 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.072 0.928 38 H 0.054 0.946 39 H 0.041 0.959 40 H 0.056 0.944 41 H 0.415 0.585 42 H 0.167 0.833 43 H 0.170 0.830 44 H 0.175 0.825 45 H 0.128 0.872 46 H 0.055 0.945 47 H 0.078 0.922 48 H 0.044 0.956 49 H 0.064 0.936 50 H 0.067 0.933 51 H 0.053 0.947 52 H 0.085 0.915 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.316 6.436 15.169 26.159 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.008 3.992 3 N -0.323 5.323 4 C -0.392 4.392 5 H 0.073 0.927 6 C -0.233 4.233 7 N -0.563 5.563 8 Si 0.782 3.218 9 H -0.188 1.188 10 H -0.217 1.217 11 H -0.220 1.220 12 C 0.026 3.974 13 C -0.162 4.162 14 C 0.007 3.993 15 N -0.365 5.365 16 C 0.299 3.701 17 O -0.460 6.460 18 C -0.071 4.071 19 H 0.155 0.845 20 C -0.123 4.123 21 C -0.096 4.096 22 C -0.188 4.188 23 C -0.078 4.078 24 N -0.231 5.231 25 C -0.045 4.045 26 C -0.098 4.098 27 C -0.193 4.193 28 C -0.223 4.223 29 H 0.083 0.917 30 H 0.071 0.929 31 H 0.056 0.944 32 H 0.049 0.951 33 H 0.058 0.942 34 H 0.059 0.941 35 H 0.074 0.926 36 H 0.043 0.957 37 H 0.090 0.910 38 H 0.073 0.927 39 H 0.060 0.940 40 H 0.075 0.925 41 H 0.255 0.745 42 H 0.184 0.816 43 H 0.187 0.813 44 H 0.193 0.807 45 H 0.145 0.855 46 H 0.073 0.927 47 H 0.097 0.903 48 H 0.063 0.937 49 H 0.083 0.917 50 H 0.086 0.914 51 H 0.072 0.928 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -18.730 7.033 15.790 25.487 hybrid contribution 0.130 0.138 -1.235 1.250 sum -18.599 7.171 14.555 24.682 Atomic orbital electron populations 1.22181 0.97083 1.00810 1.00941 1.21005 0.93941 0.85736 0.98501 1.43972 1.76939 1.09548 1.01848 1.19197 1.03334 1.23101 0.93544 0.92698 1.25928 0.94167 1.03242 0.99980 1.70134 1.04698 1.39251 1.42255 0.85434 0.77754 0.79304 0.79312 1.18797 1.21736 1.22035 1.20649 0.95399 0.95705 0.85652 1.22171 1.00659 0.99420 0.93948 1.21123 0.87163 0.95307 0.95722 1.46270 1.14911 1.51782 1.23530 1.21050 0.89903 0.78886 0.80307 1.90721 1.35891 1.64041 1.55394 1.20397 0.96909 0.97881 0.91896 0.84497 1.20361 0.97072 0.99073 0.95753 1.21881 0.98449 0.97245 0.92042 1.22468 0.99439 0.98547 0.98310 1.23287 0.91077 0.94735 0.98738 1.67655 1.29581 1.24597 1.01262 1.22375 0.95098 0.93835 0.93222 1.21031 0.99940 0.94153 0.94673 1.21769 0.97476 0.99691 1.00401 1.22184 1.02772 1.02603 0.94783 0.91715 0.92853 0.94350 0.95124 0.94182 0.94098 0.92594 0.95730 0.90971 0.92687 0.94044 0.92546 0.74538 0.81598 0.81284 0.80750 0.85490 0.92687 0.90336 0.93679 0.91727 0.91409 0.92847 0.89595 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.85 10.23 71.98 0.74 -4.12 16 2 C 0.13 5.40 6.43 86.38 0.56 5.96 16 3 N -0.60 -28.87 2.41 -702.00 -1.69 -30.56 16 4 C -0.26 -13.87 9.45 84.03 0.79 -13.08 16 5 H 0.06 2.91 7.90 -2.91 -0.02 2.89 16 6 C -0.04 -1.96 4.98 84.86 0.42 -1.53 16 7 N -0.92 -53.69 11.50 21.65 0.25 -53.45 16 8 Si 0.95 43.95 29.60 68.60 2.03 45.98 16 9 H -0.26 -11.50 7.11 99.48 0.71 -10.79 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.29 -13.62 7.11 99.48 0.71 -12.91 16 12 C 0.15 6.90 5.33 86.38 0.46 7.36 16 13 C -0.12 -4.28 5.65 30.59 0.17 -4.10 16 14 C 0.13 4.32 5.68 86.38 0.49 4.81 16 15 N -0.71 -18.06 4.31 -463.05 -2.00 -20.06 16 16 C 0.51 13.85 6.85 87.66 0.60 14.45 16 17 O -0.58 -21.43 14.80 -3.04 -0.05 -21.47 16 18 C -0.05 -0.89 2.02 -12.29 -0.02 -0.92 16 19 H 0.14 1.54 7.93 -2.39 -0.02 1.52 16 20 C -0.12 -2.50 3.00 -19.78 -0.06 -2.56 16 21 C -0.07 -1.06 9.81 22.47 0.22 -0.84 16 22 C -0.17 -2.38 10.11 22.36 0.23 -2.15 16 23 C 0.08 1.50 11.18 84.69 0.95 2.44 16 24 N -0.52 -14.07 10.36 -195.84 -2.03 -16.10 16 25 C 0.11 3.00 9.05 84.67 0.77 3.77 16 26 C -0.08 -1.30 2.25 -10.79 -0.02 -1.32 16 27 C -0.14 -1.72 8.87 71.98 0.64 -1.09 16 28 C -0.17 -2.43 8.35 71.98 0.60 -1.83 16 29 H 0.06 1.71 8.14 -2.39 -0.02 1.69 16 30 H 0.05 1.61 6.41 -2.39 -0.02 1.59 16 31 H 0.04 1.30 8.14 -2.38 -0.02 1.29 16 32 H 0.03 1.30 8.06 -2.39 -0.02 1.28 16 33 H 0.04 1.53 7.87 -2.39 -0.02 1.51 16 34 H 0.25 14.19 8.31 -92.71 -0.77 13.42 16 35 H 0.06 2.99 5.59 -2.39 -0.01 2.97 16 36 H 0.02 1.08 7.88 -2.39 -0.02 1.06 16 37 H 0.07 2.25 6.41 -2.39 -0.02 2.23 16 38 H 0.05 2.05 8.14 -2.38 -0.02 2.03 16 39 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 41 H 0.42 8.02 6.38 -92.71 -0.59 7.43 16 42 H 0.17 1.32 8.00 -2.91 -0.02 1.29 16 43 H 0.17 1.12 8.06 -2.91 -0.02 1.09 16 44 H 0.18 2.29 8.06 -2.91 -0.02 2.26 16 45 H 0.13 3.85 7.36 -2.91 -0.02 3.83 16 46 H 0.05 1.16 7.61 -2.38 -0.02 1.14 16 47 H 0.08 0.69 8.14 -2.38 -0.02 0.67 16 48 H 0.04 0.68 7.03 -2.39 -0.02 0.67 16 49 H 0.06 0.77 8.14 -2.39 -0.02 0.75 16 50 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 51 H 0.05 0.99 5.21 -2.39 -0.01 0.98 16 52 H 0.09 0.83 8.14 -2.38 -0.02 0.81 16 Total: -1.00 -72.37 410.91 4.34 -68.03 By element: Atomic # 1 Polarization: 22.08 SS G_CDS: 0.30 Total: 22.38 kcal Atomic # 6 Polarization: -2.28 SS G_CDS: 7.52 Total: 5.25 kcal Atomic # 7 Polarization: -114.70 SS G_CDS: -5.47 Total: -120.17 kcal Atomic # 8 Polarization: -21.43 SS G_CDS: -0.05 Total: -21.47 kcal Atomic # 14 Polarization: 43.95 SS G_CDS: 2.03 Total: 45.98 kcal Total: -72.37 4.34 -68.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001479858746.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.103 kcal (2) G-P(sol) polarization free energy of solvation -72.374 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.271 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.342 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.032 kcal (6) G-S(sol) free energy of system = (1) + (5) -16.929 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.97 seconds