Wall clock time and date at job start Tue Mar 31 2020 17:22:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47571 * 119.99980 * 2 1 3 5 5 C 1.53000 * 109.47547 * 184.99962 * 4 2 1 6 6 N 1.46497 * 109.47047 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99685 * 180.02562 * 6 5 4 8 8 O 1.21546 * 120.00362 * 359.97438 * 7 6 5 9 9 C 1.47850 * 119.99941 * 179.97438 * 7 6 5 10 10 C 1.39603 * 120.14131 * 5.73869 * 9 7 6 11 11 C 1.37935 * 119.84593 * 180.27713 * 10 9 7 12 12 C 1.38383 * 120.14977 * 359.74282 * 11 10 9 13 13 C 1.38338 * 120.28946 * 359.97438 * 12 11 10 14 14 C 1.37972 * 120.14594 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.07343 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47280 * 98.36161 * 15 14 13 17 17 N 1.46899 * 109.47293 * 180.02562 * 16 15 14 18 18 C 1.46899 * 111.00388 * 169.99641 * 17 16 15 19 19 C 1.46901 * 111.00047 * 293.95715 * 17 16 15 20 20 N 1.46500 * 109.47093 * 240.00402 * 2 1 3 21 21 C 1.36928 * 120.00268 * 85.00082 * 20 2 1 22 22 H 1.08002 * 119.99970 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00312 * 180.02562 * 21 20 2 24 24 N 1.31621 * 119.99589 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46921 * 89.99591 * 25 23 21 27 27 H 1.48492 * 109.47094 * 209.99688 * 25 23 21 28 28 H 1.48498 * 109.46796 * 330.00094 * 25 23 21 29 29 H 1.09004 * 109.46668 * 299.99653 * 1 2 3 30 30 H 1.08993 * 109.47440 * 59.99671 * 1 2 3 31 31 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46584 * 64.99834 * 4 2 1 33 33 H 1.09003 * 109.46968 * 305.00372 * 4 2 1 34 34 H 1.08995 * 109.46796 * 59.99824 * 5 4 2 35 35 H 1.08999 * 109.46876 * 300.00417 * 5 4 2 36 36 H 0.97001 * 120.00277 * 0.02562 * 6 5 4 37 37 H 1.07993 * 120.07691 * 0.02562 * 10 9 7 38 38 H 1.08008 * 119.92306 * 179.76938 * 11 10 9 39 39 H 1.08004 * 119.85245 * 180.02562 * 12 11 10 40 40 H 1.07998 * 119.92568 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47024 * 218.36472 * 15 14 13 42 42 H 1.09003 * 109.46945 * 338.35813 * 15 14 13 43 43 H 1.09000 * 109.47346 * 300.00113 * 16 15 14 44 44 H 1.09003 * 109.47415 * 59.99940 * 16 15 14 45 45 H 1.09003 * 109.46642 * 60.00427 * 18 17 16 46 46 H 1.09002 * 109.47299 * 179.97438 * 18 17 16 47 47 H 1.08997 * 109.47163 * 300.00235 * 18 17 16 48 48 H 1.08994 * 109.47514 * 59.99295 * 19 17 16 49 49 H 1.08997 * 109.47384 * 180.02562 * 19 17 16 50 50 H 1.09002 * 109.46724 * 299.99614 * 19 17 16 51 51 H 0.97002 * 120.00020 * 264.99482 * 20 2 1 52 52 H 0.97006 * 119.99481 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3741 -1.3398 2.7751 8 8 6.1602 -0.7988 2.0223 9 6 5.8670 -2.0368 3.9822 10 6 4.9825 -2.7602 4.7843 11 6 5.4479 -3.4034 5.9123 12 6 6.7891 -3.3372 6.2466 13 6 7.6718 -2.6270 5.4528 14 6 7.2194 -1.9790 4.3218 15 6 8.1823 -1.2053 3.4586 16 6 8.6016 -2.0654 2.2648 17 7 9.5407 -1.3114 1.4237 18 6 10.1471 -2.1781 0.4043 19 6 8.8810 -0.1536 0.8056 20 7 2.0183 -0.6905 -1.1962 21 6 2.1491 -0.0074 -2.3757 22 1 1.8919 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.9243 -1.9389 -3.4502 25 14 2.7891 0.2699 -5.1186 26 1 4.1513 0.8550 -5.2039 27 1 2.5783 -0.6615 -6.2557 28 1 1.7791 1.3571 -5.1752 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 1.2055 33 1 1.6055 -0.2618 2.1370 34 1 3.8532 0.4369 1.3573 35 1 3.9995 -1.0727 0.4259 36 1 3.4261 -1.7365 3.1101 37 1 3.9356 -2.8127 4.5245 38 1 4.7640 -3.9603 6.5357 39 1 7.1484 -3.8430 7.1306 40 1 8.7173 -2.5789 5.7194 41 1 7.6991 -0.2965 3.0997 42 1 9.0634 -0.9414 4.0436 43 1 9.0848 -2.9742 2.6237 44 1 7.7205 -2.3293 1.6798 45 1 9.3650 -2.5936 -0.2311 46 1 10.8376 -1.5946 -0.2046 47 1 10.6882 -2.9889 0.8919 48 1 8.5016 0.5073 1.5849 49 1 9.5985 0.3866 0.1881 50 1 8.0530 -0.4959 0.1847 51 1 2.2491 -1.6317 -1.1527 52 1 3.2477 -2.3961 -4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480782295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:23 Heat of formation + Delta-G solvation = -0.973734 kcal Electronic energy + Delta-G solvation = -29121.255567 eV Core-core repulsion = 25313.737276 eV Total energy + Delta-G solvation = -3807.518291 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -40.50736 -38.40142 -37.36053 -36.54642 -34.55128 -33.01059 -32.34976 -31.42104 -29.29284 -28.84013 -27.98487 -27.35160 -24.88313 -24.06330 -23.61063 -22.61663 -21.59914 -20.75809 -20.44272 -19.68025 -17.83205 -17.17913 -16.22077 -16.00976 -15.52698 -15.40324 -15.21348 -14.85028 -14.71380 -14.65361 -14.50885 -13.95986 -13.60648 -13.48259 -13.19330 -13.15329 -12.80236 -12.66062 -12.47702 -12.14176 -12.03830 -11.95457 -11.71628 -11.62649 -11.54229 -11.34556 -11.11578 -11.09259 -10.91789 -10.76442 -10.64860 -10.64018 -10.27279 -9.98490 -9.64651 -9.45355 -9.20025 -8.99241 -8.91053 -8.70447 -8.19410 -6.95429 -5.75277 -3.03904 0.72285 1.13135 2.90321 3.29992 3.44934 3.50115 3.51354 3.70286 4.10759 4.57363 4.60596 4.62699 4.68962 4.86136 5.08427 5.18373 5.25407 5.29077 5.31158 5.37615 5.38518 5.55316 5.56708 5.58492 5.66890 5.70873 5.76609 5.81994 5.86887 5.90074 5.96554 6.03388 6.05414 6.08365 6.16650 6.19920 6.21428 6.31873 6.33918 6.38578 6.46826 6.52295 6.67416 6.68897 6.71917 6.85623 7.05283 7.15325 7.17566 7.64341 7.71785 8.36815 8.42966 9.54459 10.11050 10.45628 11.47295 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.003247 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.910852 B = 8622.059832 C =10826.783894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.175 3.825 3 H 0.049 0.951 4 C -0.133 4.133 5 C 0.124 3.876 6 N -0.724 5.724 7 C 0.548 3.452 8 O -0.521 6.521 9 C -0.131 4.131 10 C -0.085 4.085 11 C -0.134 4.134 12 C -0.096 4.096 13 C -0.127 4.127 14 C -0.021 4.021 15 C -0.084 4.084 16 C 0.071 3.929 17 N -0.547 5.547 18 C 0.024 3.976 19 C 0.030 3.970 20 N -0.723 5.723 21 C -0.237 4.237 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.904 3.096 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.035 0.965 30 H 0.054 0.946 31 H 0.045 0.955 32 H 0.065 0.935 33 H 0.062 0.938 34 H 0.064 0.936 35 H 0.085 0.915 36 H 0.394 0.606 37 H 0.125 0.875 38 H 0.126 0.874 39 H 0.125 0.875 40 H 0.128 0.872 41 H 0.104 0.896 42 H 0.068 0.932 43 H 0.060 0.940 44 H 0.048 0.952 45 H 0.026 0.974 46 H 0.065 0.935 47 H 0.063 0.937 48 H 0.070 0.930 49 H 0.056 0.944 50 H 0.037 0.963 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.748 -2.653 21.286 22.807 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.064 3.936 3 H 0.067 0.933 4 C -0.172 4.172 5 C 0.002 3.998 6 N -0.375 5.375 7 C 0.336 3.664 8 O -0.399 6.399 9 C -0.134 4.134 10 C -0.104 4.104 11 C -0.152 4.152 12 C -0.114 4.114 13 C -0.145 4.145 14 C -0.022 4.022 15 C -0.121 4.121 16 C -0.057 4.057 17 N -0.271 5.271 18 C -0.124 4.124 19 C -0.118 4.118 20 N -0.365 5.365 21 C -0.368 4.368 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.735 3.265 26 H -0.217 1.217 27 H -0.219 1.219 28 H -0.208 1.208 29 H 0.054 0.946 30 H 0.073 0.927 31 H 0.065 0.935 32 H 0.083 0.917 33 H 0.080 0.920 34 H 0.083 0.917 35 H 0.103 0.897 36 H 0.228 0.772 37 H 0.143 0.857 38 H 0.144 0.856 39 H 0.143 0.857 40 H 0.146 0.854 41 H 0.122 0.878 42 H 0.087 0.913 43 H 0.079 0.921 44 H 0.066 0.934 45 H 0.045 0.955 46 H 0.084 0.916 47 H 0.081 0.919 48 H 0.089 0.911 49 H 0.075 0.925 50 H 0.055 0.945 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 8.685 -1.944 20.847 22.667 hybrid contribution -0.980 -0.535 -1.129 1.588 sum 7.704 -2.480 19.718 21.314 Atomic orbital electron populations 1.22426 0.99155 1.00818 0.99969 1.20143 0.91860 0.95550 0.85999 0.93310 1.22067 0.93971 1.01768 0.99363 1.21447 0.94355 0.97119 0.86920 1.46070 1.07048 1.56860 1.27554 1.18248 0.82532 0.80440 0.85218 1.90755 1.54492 1.45699 1.48964 1.19937 0.94258 1.02105 0.97114 1.21316 0.99158 0.95695 0.94244 1.21071 0.95984 1.00731 0.97428 1.21327 0.93473 0.97565 0.99049 1.21087 1.00093 0.98351 0.94959 1.20020 0.92799 0.94931 0.94487 1.20804 0.96702 0.99737 0.94870 1.21935 0.94603 0.95178 0.93951 1.62049 1.33596 1.09428 1.22036 1.22350 0.98816 0.96905 0.94375 1.22336 0.97387 0.93080 0.99038 1.42450 1.78090 1.10634 1.05365 1.19212 1.36488 0.93816 0.87328 0.91239 1.24717 1.02188 0.95932 0.98013 1.69659 1.50942 1.08644 1.28848 0.86230 0.77824 0.78606 0.83791 1.21720 1.21855 1.20805 0.94582 0.92710 0.93543 0.91663 0.91955 0.91744 0.89707 0.77185 0.85669 0.85585 0.85731 0.85407 0.87835 0.91343 0.92150 0.93378 0.95522 0.91585 0.91860 0.91084 0.92508 0.94469 0.78318 0.93594 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.83 9.49 37.16 0.35 -2.48 16 2 C 0.17 3.31 2.89 -67.93 -0.20 3.11 16 3 H 0.05 0.95 8.08 -51.93 -0.42 0.53 16 4 C -0.13 -1.99 4.87 -26.73 -0.13 -2.12 16 5 C 0.12 2.01 5.56 -4.04 -0.02 1.99 16 6 N -0.72 -9.66 5.51 -61.25 -0.34 -9.99 16 7 C 0.55 8.03 7.64 -12.33 -0.09 7.94 16 8 O -0.52 -9.06 10.61 5.33 0.06 -9.00 16 9 C -0.13 -1.59 5.87 -104.96 -0.62 -2.21 16 10 C -0.09 -0.82 9.53 -39.18 -0.37 -1.19 16 11 C -0.13 -1.10 10.03 -39.64 -0.40 -1.49 16 12 C -0.10 -0.77 10.04 -39.49 -0.40 -1.17 16 13 C -0.13 -1.19 9.66 -39.64 -0.38 -1.57 16 14 C -0.02 -0.24 5.17 -104.23 -0.54 -0.78 16 15 C -0.08 -1.05 4.53 -27.88 -0.13 -1.18 16 16 C 0.07 0.97 4.49 -3.83 -0.02 0.95 16 17 N -0.55 -7.52 5.02 -251.27 -1.26 -8.78 16 18 C 0.02 0.29 9.57 60.06 0.57 0.87 16 19 C 0.03 0.43 8.54 60.07 0.51 0.94 16 20 N -0.72 -17.57 4.57 -53.43 -0.24 -17.82 16 21 C -0.24 -6.51 9.93 -15.06 -0.15 -6.66 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.19 13.06 55.49 0.72 -27.46 16 25 Si 0.90 22.59 29.55 -169.99 -5.02 17.57 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.37 7.11 56.52 0.40 -6.97 16 28 H -0.28 -6.85 7.11 56.52 0.40 -6.45 16 29 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 30 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 31 H 0.05 0.80 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.97 8.14 -51.93 -0.42 0.55 16 33 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 34 H 0.06 1.10 8.14 -51.93 -0.42 0.68 16 35 H 0.08 1.73 7.75 -51.93 -0.40 1.33 16 36 H 0.39 4.05 6.54 -40.82 -0.27 3.79 16 37 H 0.13 0.95 6.45 -52.49 -0.34 0.61 16 38 H 0.13 0.73 8.06 -52.48 -0.42 0.30 16 39 H 0.12 0.69 8.06 -52.48 -0.42 0.26 16 40 H 0.13 0.96 8.05 -52.49 -0.42 0.54 16 41 H 0.10 1.51 4.36 -51.93 -0.23 1.29 16 42 H 0.07 0.77 8.02 -51.93 -0.42 0.36 16 43 H 0.06 0.75 8.06 -51.93 -0.42 0.33 16 44 H 0.05 0.79 6.58 -51.93 -0.34 0.45 16 45 H 0.03 0.35 8.14 -51.93 -0.42 -0.07 16 46 H 0.07 0.73 8.12 -51.93 -0.42 0.31 16 47 H 0.06 0.68 8.12 -51.93 -0.42 0.25 16 48 H 0.07 1.04 6.46 -51.93 -0.34 0.70 16 49 H 0.06 0.74 8.12 -51.93 -0.42 0.32 16 50 H 0.04 0.63 7.95 -51.93 -0.41 0.22 16 51 H 0.38 9.96 7.80 -40.82 -0.32 9.64 16 52 H 0.25 7.50 8.31 -40.82 -0.34 7.16 16 LS Contribution 412.65 15.07 6.22 6.22 Total: -1.00 -31.73 412.65 -10.90 -42.63 By element: Atomic # 1 Polarization: 21.08 SS G_CDS: -8.94 Total: 12.15 kcal Atomic # 6 Polarization: -3.41 SS G_CDS: -2.10 Total: -5.51 kcal Atomic # 7 Polarization: -62.93 SS G_CDS: -1.12 Total: -64.05 kcal Atomic # 8 Polarization: -9.06 SS G_CDS: 0.06 Total: -9.00 kcal Atomic # 14 Polarization: 22.59 SS G_CDS: -5.02 Total: 17.57 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -31.73 -10.90 -42.63 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480782295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 41.653 kcal (2) G-P(sol) polarization free energy of solvation -31.727 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.925 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.899 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.626 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.974 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds