Wall clock time and date at job start Tue Mar 31 2020 17:22:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09000 * 109.47172 * 2 1 4 4 C 1.53004 * 109.47571 * 119.99980 * 2 1 3 5 5 C 1.53000 * 109.47547 * 184.99962 * 4 2 1 6 6 N 1.46497 * 109.47047 * 180.02562 * 5 4 2 7 7 C 1.34775 * 119.99685 * 180.02562 * 6 5 4 8 8 O 1.21546 * 120.00362 * 359.97438 * 7 6 5 9 9 C 1.47850 * 119.99941 * 179.97438 * 7 6 5 10 10 C 1.39603 * 120.14131 * 5.73869 * 9 7 6 11 11 C 1.37935 * 119.84593 * 180.27713 * 10 9 7 12 12 C 1.38383 * 120.14977 * 359.74282 * 11 10 9 13 13 C 1.38338 * 120.28946 * 359.97438 * 12 11 10 14 14 C 1.37972 * 120.14594 * 0.02562 * 13 12 11 15 15 C 1.50705 * 120.07343 * 179.97438 * 14 13 12 16 16 C 1.52992 * 109.47280 * 98.36161 * 15 14 13 17 17 N 1.46899 * 109.47293 * 180.02562 * 16 15 14 18 18 C 1.46899 * 111.00388 * 169.99641 * 17 16 15 19 19 C 1.46901 * 111.00047 * 293.95715 * 17 16 15 20 20 N 1.46500 * 109.47093 * 240.00402 * 2 1 3 21 21 C 1.36928 * 120.00268 * 85.00082 * 20 2 1 22 22 H 1.08002 * 119.99970 * 359.97438 * 21 20 2 23 23 C 1.38813 * 120.00312 * 180.02562 * 21 20 2 24 24 N 1.31621 * 119.99589 * 359.97438 * 23 21 20 25 25 Si 1.86805 * 120.00329 * 179.97438 * 23 21 20 26 26 H 1.48501 * 109.46921 * 89.99591 * 25 23 21 27 27 H 1.48492 * 109.47094 * 209.99688 * 25 23 21 28 28 H 1.48498 * 109.46796 * 330.00094 * 25 23 21 29 29 H 1.09004 * 109.46668 * 299.99653 * 1 2 3 30 30 H 1.08993 * 109.47440 * 59.99671 * 1 2 3 31 31 H 1.09000 * 109.47172 * 180.02562 * 1 2 3 32 32 H 1.09007 * 109.46584 * 64.99834 * 4 2 1 33 33 H 1.09003 * 109.46968 * 305.00372 * 4 2 1 34 34 H 1.08995 * 109.46796 * 59.99824 * 5 4 2 35 35 H 1.08999 * 109.46876 * 300.00417 * 5 4 2 36 36 H 0.97001 * 120.00277 * 0.02562 * 6 5 4 37 37 H 1.07993 * 120.07691 * 0.02562 * 10 9 7 38 38 H 1.08008 * 119.92306 * 179.76938 * 11 10 9 39 39 H 1.08004 * 119.85245 * 180.02562 * 12 11 10 40 40 H 1.07998 * 119.92568 * 179.97438 * 13 12 11 41 41 H 1.09000 * 109.47024 * 218.36472 * 15 14 13 42 42 H 1.09003 * 109.46945 * 338.35813 * 15 14 13 43 43 H 1.09000 * 109.47346 * 300.00113 * 16 15 14 44 44 H 1.09003 * 109.47415 * 59.99940 * 16 15 14 45 45 H 1.09003 * 109.46642 * 60.00427 * 18 17 16 46 46 H 1.09002 * 109.47299 * 179.97438 * 18 17 16 47 47 H 1.08997 * 109.47163 * 300.00235 * 18 17 16 48 48 H 1.08994 * 109.47514 * 59.99295 * 19 17 16 49 49 H 1.08997 * 109.47384 * 180.02562 * 19 17 16 50 50 H 1.09002 * 109.46724 * 299.99614 * 19 17 16 51 51 H 0.97002 * 120.00020 * 264.99482 * 20 2 1 52 52 H 0.97006 * 119.99481 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0401 -0.7212 1.2492 5 6 3.5649 -0.6133 1.3137 6 7 4.0533 -1.3044 2.5095 7 6 5.3741 -1.3398 2.7751 8 8 6.1602 -0.7988 2.0223 9 6 5.8670 -2.0368 3.9822 10 6 4.9825 -2.7602 4.7843 11 6 5.4479 -3.4034 5.9123 12 6 6.7891 -3.3372 6.2466 13 6 7.6718 -2.6270 5.4528 14 6 7.2194 -1.9790 4.3218 15 6 8.1823 -1.2053 3.4586 16 6 8.6016 -2.0654 2.2648 17 7 9.5407 -1.3114 1.4237 18 6 10.1471 -2.1781 0.4043 19 6 8.8810 -0.1536 0.8056 20 7 2.0183 -0.6905 -1.1962 21 6 2.1491 -0.0074 -2.3757 22 1 1.8919 1.0404 -2.4243 23 6 2.6113 -0.6618 -3.5093 24 7 2.9243 -1.9389 -3.4502 25 14 2.7891 0.2699 -5.1186 26 1 4.1513 0.8550 -5.2039 27 1 2.5783 -0.6615 -6.2557 28 1 1.7791 1.3571 -5.1752 29 1 -0.3633 0.5138 0.8901 30 1 -0.3634 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 1.7517 -1.7716 1.2055 33 1 1.6055 -0.2618 2.1370 34 1 3.8532 0.4369 1.3573 35 1 3.9995 -1.0727 0.4259 36 1 3.4261 -1.7365 3.1101 37 1 3.9356 -2.8127 4.5245 38 1 4.7640 -3.9603 6.5357 39 1 7.1484 -3.8430 7.1306 40 1 8.7173 -2.5789 5.7194 41 1 7.6991 -0.2965 3.0997 42 1 9.0634 -0.9414 4.0436 43 1 9.0848 -2.9742 2.6237 44 1 7.7205 -2.3293 1.6798 45 1 9.3650 -2.5936 -0.2311 46 1 10.8376 -1.5946 -0.2046 47 1 10.6882 -2.9889 0.8919 48 1 8.5016 0.5073 1.5849 49 1 9.5985 0.3866 0.1881 50 1 8.0530 -0.4959 0.1847 51 1 2.2491 -1.6317 -1.1527 52 1 3.2477 -2.3961 -4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480782295.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:22 Heat of formation + Delta-G solvation = -21.981562 kcal Electronic energy + Delta-G solvation = -29122.166535 eV Core-core repulsion = 25313.737276 eV Total energy + Delta-G solvation = -3808.429259 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.47931 -39.39848 -38.42726 -38.06665 -35.94325 -34.29247 -33.80851 -32.40103 -30.88328 -29.91582 -29.33543 -28.50525 -26.06330 -25.66089 -24.81009 -23.78783 -22.58380 -21.91229 -21.59731 -21.01737 -19.32480 -18.68602 -17.20367 -17.05663 -16.87844 -16.57895 -16.38767 -16.13527 -15.78227 -15.71004 -15.63089 -15.49775 -15.30317 -14.61221 -14.55269 -14.18882 -13.96177 -13.80085 -13.62942 -13.53167 -13.29106 -13.24574 -12.85900 -12.77216 -12.70944 -12.64663 -12.54798 -12.36375 -12.30253 -12.26316 -12.12324 -11.91038 -11.77494 -11.63752 -11.57457 -10.96912 -10.58941 -10.15204 -9.85374 -9.65554 -9.37904 -8.99554 -7.94504 -5.21135 -0.08055 0.42058 1.43587 1.45561 1.53093 1.93488 2.18676 2.55120 2.84292 3.06361 3.39885 3.72826 3.85463 3.89788 3.90640 4.00470 4.14106 4.16851 4.20968 4.26215 4.34160 4.35599 4.48274 4.50499 4.54723 4.64612 4.65489 4.67690 4.74693 4.75347 4.85528 4.90529 4.90959 4.97815 5.00674 5.02054 5.08103 5.12085 5.20638 5.25785 5.37888 5.38951 5.50773 5.52352 5.53333 5.60073 5.63504 5.96373 6.01951 6.07796 6.28326 6.58926 7.28270 7.34401 8.12399 8.33625 9.29001 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009980 B = 0.003247 C = 0.002586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2804.910852 B = 8622.059832 C =10826.783894 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.165 3.835 3 H 0.042 0.958 4 C -0.116 4.116 5 C 0.139 3.861 6 N -0.713 5.713 7 C 0.539 3.461 8 O -0.558 6.558 9 C -0.154 4.154 10 C -0.088 4.088 11 C -0.130 4.130 12 C -0.087 4.087 13 C -0.129 4.129 14 C -0.040 4.040 15 C -0.075 4.075 16 C 0.078 3.922 17 N -0.546 5.546 18 C 0.023 3.977 19 C 0.040 3.960 20 N -0.735 5.735 21 C -0.232 4.232 22 H 0.074 0.926 23 C -0.078 4.078 24 N -0.970 5.970 25 Si 0.965 3.035 26 H -0.293 1.293 27 H -0.296 1.296 28 H -0.268 1.268 29 H 0.076 0.924 30 H 0.032 0.968 31 H 0.045 0.955 32 H 0.070 0.930 33 H 0.105 0.895 34 H 0.051 0.949 35 H 0.033 0.967 36 H 0.411 0.589 37 H 0.144 0.856 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.146 0.854 41 H 0.077 0.923 42 H 0.081 0.919 43 H 0.075 0.925 44 H 0.012 0.988 45 H 0.007 0.993 46 H 0.078 0.922 47 H 0.083 0.917 48 H 0.065 0.935 49 H 0.072 0.928 50 H 0.000 1.000 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.349 -3.087 24.644 25.901 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.056 3.944 3 H 0.060 0.940 4 C -0.154 4.154 5 C 0.015 3.985 6 N -0.365 5.365 7 C 0.328 3.672 8 O -0.439 6.439 9 C -0.157 4.157 10 C -0.106 4.106 11 C -0.148 4.148 12 C -0.105 4.105 13 C -0.147 4.147 14 C -0.042 4.042 15 C -0.112 4.112 16 C -0.050 4.050 17 N -0.270 5.270 18 C -0.126 4.126 19 C -0.108 4.108 20 N -0.376 5.376 21 C -0.364 4.364 22 H 0.091 0.909 23 C -0.270 4.270 24 N -0.621 5.621 25 Si 0.795 3.205 26 H -0.220 1.220 27 H -0.223 1.223 28 H -0.192 1.192 29 H 0.094 0.906 30 H 0.051 0.949 31 H 0.064 0.936 32 H 0.089 0.911 33 H 0.123 0.877 34 H 0.069 0.931 35 H 0.052 0.948 36 H 0.249 0.751 37 H 0.161 0.839 38 H 0.176 0.824 39 H 0.176 0.824 40 H 0.164 0.836 41 H 0.095 0.905 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.030 0.970 45 H 0.025 0.975 46 H 0.097 0.903 47 H 0.102 0.898 48 H 0.084 0.916 49 H 0.090 0.910 50 H 0.019 0.981 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.239 -2.353 24.264 25.733 hybrid contribution -0.845 -0.399 -2.027 2.232 sum 7.394 -2.752 22.237 23.595 Atomic orbital electron populations 1.22260 0.97087 1.01055 1.00886 1.20445 0.93168 0.95123 0.85621 0.94028 1.21919 0.92564 1.02011 0.98955 1.21039 0.95224 0.95979 0.86285 1.45844 1.07259 1.56640 1.26790 1.18861 0.82451 0.80059 0.85836 1.90750 1.55416 1.47278 1.50413 1.19829 0.95187 1.03834 0.96856 1.21567 0.99697 0.95043 0.94310 1.21485 0.96725 0.99809 0.96777 1.21764 0.93208 0.96181 0.99361 1.21323 1.01448 0.97883 0.94061 1.20059 0.92470 0.96104 0.95564 1.20637 0.97261 0.98653 0.94655 1.21889 0.93217 0.96004 0.93931 1.62138 1.33100 1.09468 1.22256 1.22442 0.98457 0.97468 0.94191 1.22211 0.96569 0.93573 0.98485 1.42650 1.78378 1.10204 1.06330 1.19588 1.34329 0.94036 0.88431 0.90858 1.25474 1.03352 0.96834 1.01293 1.69814 1.52975 1.10156 1.29169 0.85255 0.77709 0.77613 0.79954 1.22023 1.22284 1.19239 0.90565 0.94858 0.93620 0.91094 0.87712 0.93090 0.94805 0.75104 0.83877 0.82442 0.82427 0.83578 0.90525 0.90046 0.90696 0.96982 0.97454 0.90279 0.89798 0.91583 0.90959 0.98102 0.79713 0.94349 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.02 9.49 71.98 0.68 -4.34 16 2 C 0.16 6.17 2.89 44.99 0.13 6.30 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 4 C -0.12 -3.34 4.87 30.60 0.15 -3.20 16 5 C 0.14 4.67 5.56 86.38 0.48 5.15 16 6 N -0.71 -19.28 5.51 -465.99 -2.57 -21.85 16 7 C 0.54 16.58 7.64 86.79 0.66 17.24 16 8 O -0.56 -21.22 10.61 -3.86 -0.04 -21.26 16 9 C -0.15 -3.71 5.87 -20.09 -0.12 -3.83 16 10 C -0.09 -1.49 9.53 22.53 0.21 -1.27 16 11 C -0.13 -1.62 10.03 22.23 0.22 -1.40 16 12 C -0.09 -1.05 10.04 22.33 0.22 -0.83 16 13 C -0.13 -2.10 9.66 22.23 0.21 -1.88 16 14 C -0.04 -0.93 5.17 -19.61 -0.10 -1.03 16 15 C -0.07 -1.94 4.53 29.85 0.14 -1.80 16 16 C 0.08 2.21 4.49 86.30 0.39 2.60 16 17 N -0.55 -15.54 5.02 -948.87 -4.76 -20.30 16 18 C 0.02 0.56 9.57 127.69 1.22 1.79 16 19 C 0.04 1.26 8.54 127.69 1.09 2.35 16 20 N -0.73 -36.70 4.57 -322.94 -1.48 -38.17 16 21 C -0.23 -13.02 9.93 84.04 0.83 -12.18 16 22 H 0.07 3.98 7.83 -2.91 -0.02 3.96 16 23 C -0.08 -4.56 5.50 84.86 0.47 -4.10 16 24 N -0.97 -60.92 13.06 21.65 0.28 -60.63 16 25 Si 0.96 47.66 29.55 68.60 2.03 49.68 16 26 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 27 H -0.30 -14.70 7.11 99.48 0.71 -13.99 16 28 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 29 H 0.08 1.90 8.14 -2.38 -0.02 1.88 16 30 H 0.03 1.21 8.14 -2.39 -0.02 1.19 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 33 H 0.10 2.20 8.14 -2.39 -0.02 2.18 16 34 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.03 1.49 7.75 -2.39 -0.02 1.47 16 36 H 0.41 7.92 6.54 -92.71 -0.61 7.31 16 37 H 0.14 1.77 6.45 -2.91 -0.02 1.75 16 38 H 0.16 0.99 8.06 -2.91 -0.02 0.97 16 39 H 0.16 0.89 8.06 -2.91 -0.02 0.86 16 40 H 0.15 1.76 8.05 -2.91 -0.02 1.74 16 41 H 0.08 2.42 4.36 -2.39 -0.01 2.41 16 42 H 0.08 1.82 8.02 -2.39 -0.02 1.80 16 43 H 0.07 1.87 8.06 -2.39 -0.02 1.85 16 44 H 0.01 0.43 6.58 -2.39 -0.02 0.41 16 45 H 0.01 0.20 8.14 -2.39 -0.02 0.18 16 46 H 0.08 1.74 8.12 -2.39 -0.02 1.72 16 47 H 0.08 1.73 8.12 -2.39 -0.02 1.71 16 48 H 0.07 2.10 6.46 -2.39 -0.02 2.09 16 49 H 0.07 1.98 8.12 -2.39 -0.02 1.96 16 50 H 0.00 0.01 7.95 -2.39 -0.02 -0.01 16 51 H 0.37 20.10 7.80 -92.71 -0.72 19.38 16 52 H 0.25 15.21 8.31 -92.70 -0.77 14.44 16 Total: -1.00 -74.21 412.65 -0.06 -74.27 By element: Atomic # 1 Polarization: 39.11 SS G_CDS: -0.42 Total: 38.69 kcal Atomic # 6 Polarization: -7.33 SS G_CDS: 6.90 Total: -0.43 kcal Atomic # 7 Polarization: -132.43 SS G_CDS: -8.52 Total: -140.95 kcal Atomic # 8 Polarization: -21.22 SS G_CDS: -0.04 Total: -21.26 kcal Atomic # 14 Polarization: 47.66 SS G_CDS: 2.03 Total: 49.68 kcal Total: -74.21 -0.06 -74.27 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480782295.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.287 kcal (2) G-P(sol) polarization free energy of solvation -74.211 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -21.924 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.057 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.269 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.982 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds