Wall clock time and date at job start Tue Mar 31 2020 17:22:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47111 * 2 1 4 4 C 1.53005 * 109.46661 * 240.00209 * 2 1 3 5 5 C 1.53006 * 109.46807 * 174.99837 * 4 2 1 6 6 N 1.46499 * 109.46751 * 179.97438 * 5 4 2 7 7 C 1.34781 * 119.99679 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00026 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99913 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47114 * 179.97438 * 10 9 7 12 12 C 1.38311 * 119.96542 * 270.02404 * 11 10 9 13 13 C 1.38266 * 120.15052 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.07577 * 359.74818 * 13 12 11 15 15 C 1.38893 * 119.92137 * 0.48472 * 14 13 12 16 16 N 1.39675 * 120.06980 * 179.79253 * 15 14 13 17 17 C 1.46507 * 119.99622 * 179.72195 * 16 15 14 18 18 C 1.46498 * 120.00353 * 359.44307 * 16 15 14 19 19 C 1.38080 * 119.96474 * 90.00088 * 11 10 9 20 20 N 1.46504 * 109.47525 * 120.00554 * 2 1 3 21 21 C 1.36939 * 119.99498 * 275.00171 * 20 2 1 22 22 H 1.07992 * 120.00342 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99705 * 179.97438 * 21 20 2 24 24 N 1.31626 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00213 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47344 * 89.99557 * 25 23 21 27 27 H 1.48501 * 109.46899 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46681 * 329.99495 * 25 23 21 29 29 H 1.09004 * 109.46474 * 299.99536 * 1 2 3 30 30 H 1.08995 * 109.47494 * 59.99494 * 1 2 3 31 31 H 1.08996 * 109.47424 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47035 * 55.00317 * 4 2 1 33 33 H 1.08999 * 109.47112 * 294.99781 * 4 2 1 34 34 H 1.09001 * 109.46931 * 60.00416 * 5 4 2 35 35 H 1.08994 * 109.47247 * 300.00331 * 5 4 2 36 36 H 0.97000 * 120.00292 * 0.02562 * 6 5 4 37 37 H 1.09006 * 109.46849 * 59.99968 * 9 7 6 38 38 H 1.08998 * 109.47331 * 300.00747 * 9 7 6 39 39 H 1.09001 * 109.46867 * 60.00395 * 10 9 7 40 40 H 1.08999 * 109.47174 * 299.99923 * 10 9 7 41 41 H 1.08001 * 119.92073 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.95964 * 179.97438 * 13 12 11 43 43 H 1.08000 * 120.03594 * 180.27150 * 14 13 12 44 44 H 1.09001 * 109.47091 * 90.00293 * 17 16 15 45 45 H 1.09004 * 109.46622 * 209.99851 * 17 16 15 46 46 H 1.08997 * 109.47201 * 329.99553 * 17 16 15 47 47 H 1.09009 * 109.46732 * 90.00268 * 18 16 15 48 48 H 1.08998 * 109.47268 * 209.99630 * 18 16 15 49 49 H 1.08996 * 109.47244 * 330.00204 * 18 16 15 50 50 H 1.08008 * 120.03420 * 0.02562 * 19 11 10 51 51 H 0.97002 * 120.00143 * 94.99247 * 20 2 1 52 52 H 0.96994 * 119.99939 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0530 -1.3044 -2.5097 7 6 5.3739 -1.3398 -2.7755 8 8 6.1583 -0.7999 -2.0243 9 6 5.8762 -2.0502 -4.0059 10 6 7.4010 -1.9423 -4.0704 11 6 7.9033 -2.6533 -5.3005 12 6 8.2315 -3.9954 -5.2372 13 6 8.6922 -4.6516 -6.3636 14 6 8.8213 -3.9696 -7.5578 15 6 8.4972 -2.6206 -7.6237 16 7 8.6307 -1.9269 -8.8286 17 6 8.2826 -0.5054 -8.8979 18 6 9.1245 -2.6190 -10.0216 19 6 8.0350 -1.9642 -6.4899 20 7 2.0184 -0.6907 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8927 1.0403 2.4242 23 6 2.6115 -0.6621 3.5092 24 7 2.9236 -1.9395 3.4502 25 14 2.7906 0.2697 5.1182 26 1 1.5229 0.1796 5.8862 27 1 3.8948 -0.3242 5.9139 28 1 3.0966 1.6947 4.8334 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -0.2616 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 3.9994 -1.0729 -0.4262 35 1 3.8531 0.4369 -1.3574 36 1 3.4257 -1.7358 -3.1107 37 1 5.4412 -1.5909 -4.8936 38 1 5.5880 -3.1005 -3.9622 39 1 7.8355 -2.4020 -3.1827 40 1 7.6894 -0.8921 -4.1140 41 1 8.1276 -4.5320 -4.3056 42 1 8.9480 -5.6995 -6.3105 43 1 9.1771 -4.4839 -8.4383 44 1 9.1616 0.0956 -8.6650 45 1 7.9339 -0.2653 -9.9023 46 1 7.4933 -0.2892 -8.1779 47 1 8.2833 -3.0434 -10.5698 48 1 9.6537 -1.9111 -10.6595 49 1 9.8038 -3.4175 -9.7233 50 1 7.7785 -0.9162 -6.5387 51 1 2.2491 -1.6319 1.1525 52 1 3.2463 -2.3969 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480786340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:46 Heat of formation + Delta-G solvation = -8.108094 kcal Electronic energy + Delta-G solvation = -27375.049903 eV Core-core repulsion = 23567.222243 eV Total energy + Delta-G solvation = -3807.827660 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.92 seconds Orbital eigenvalues (eV) -40.06344 -39.38025 -36.86687 -36.50010 -34.31993 -33.78764 -32.22202 -30.74516 -30.04500 -29.17849 -28.48478 -27.86352 -25.12313 -24.79301 -23.69200 -22.36309 -21.76351 -20.57341 -20.21474 -19.53018 -17.61865 -17.23125 -16.70420 -16.25757 -15.69842 -15.63939 -15.54319 -15.42334 -14.94068 -14.45675 -14.23611 -13.97137 -13.78829 -13.50704 -13.32929 -13.27930 -13.04027 -12.91712 -12.57980 -12.46008 -12.41733 -12.20181 -12.03375 -11.97010 -11.61280 -11.51484 -11.11776 -11.01946 -10.91370 -10.87712 -10.71175 -10.59329 -10.26388 -10.06365 -9.96826 -9.62306 -9.56696 -8.90256 -8.87583 -8.73429 -7.55690 -6.91562 -5.71629 -3.00222 1.23211 1.43300 2.78354 2.86389 3.39165 3.47607 3.52920 3.54667 3.71207 4.50167 4.59081 4.64021 4.68871 4.81419 4.85672 4.93594 5.00384 5.02449 5.14790 5.19297 5.24566 5.30994 5.32173 5.36239 5.42155 5.43288 5.47557 5.53185 5.60001 5.73345 5.80440 5.84195 5.91731 6.02442 6.10500 6.13408 6.20946 6.36980 6.38527 6.43070 6.53209 6.57318 6.67474 6.72985 6.76840 6.89429 6.92137 7.08920 7.21806 7.72475 7.75275 8.46054 8.46807 9.58077 10.14922 10.49504 11.51019 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.001735 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.768467 B =16135.904612 C =16783.561610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.731 5.731 7 C 0.506 3.494 8 O -0.538 6.538 9 C -0.132 4.132 10 C -0.067 4.067 11 C -0.032 4.032 12 C -0.173 4.173 13 C -0.071 4.071 14 C -0.204 4.204 15 C 0.213 3.787 16 N -0.641 5.641 17 C 0.093 3.907 18 C 0.095 3.905 19 C -0.193 4.193 20 N -0.723 5.723 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.014 4.014 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.053 0.947 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.061 0.939 33 H 0.065 0.935 34 H 0.084 0.916 35 H 0.062 0.938 36 H 0.396 0.604 37 H 0.090 0.910 38 H 0.093 0.907 39 H 0.082 0.918 40 H 0.079 0.921 41 H 0.120 0.880 42 H 0.120 0.880 43 H 0.119 0.881 44 H 0.047 0.953 45 H 0.065 0.935 46 H 0.070 0.930 47 H 0.046 0.954 48 H 0.064 0.936 49 H 0.068 0.932 50 H 0.121 0.879 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.277 -3.008 -30.094 31.635 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.382 5.382 7 C 0.292 3.708 8 O -0.415 6.415 9 C -0.172 4.172 10 C -0.105 4.105 11 C -0.032 4.032 12 C -0.193 4.193 13 C -0.090 4.090 14 C -0.226 4.226 15 C 0.112 3.888 16 N -0.354 5.354 17 C -0.050 4.050 18 C -0.048 4.048 19 C -0.215 4.215 20 N -0.365 5.365 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.072 0.928 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.080 0.920 33 H 0.084 0.916 34 H 0.102 0.898 35 H 0.080 0.920 36 H 0.229 0.771 37 H 0.109 0.891 38 H 0.112 0.888 39 H 0.101 0.899 40 H 0.097 0.903 41 H 0.138 0.862 42 H 0.138 0.862 43 H 0.136 0.864 44 H 0.066 0.934 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.065 0.935 48 H 0.083 0.917 49 H 0.086 0.914 50 H 0.139 0.861 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 9.888 -2.371 -29.569 31.268 hybrid contribution -0.244 -0.101 0.559 0.618 sum 9.644 -2.472 -29.009 30.670 Atomic orbital electron populations 1.22424 0.99179 1.00810 0.99923 1.20160 0.91846 0.95586 0.86089 0.93327 1.22055 0.94024 1.01736 0.99242 1.21439 0.94317 0.97113 0.87281 1.46155 1.07338 1.57149 1.27553 1.20644 0.82417 0.80570 0.87190 1.90737 1.55236 1.45743 1.49790 1.21619 0.96840 1.02073 0.96675 1.20353 0.93442 1.01289 0.95381 1.19668 0.95765 0.93703 0.94108 1.20881 1.05120 0.94371 0.98897 1.20870 0.96720 0.99232 0.92144 1.20636 1.09833 0.93104 0.99061 1.17802 0.94140 0.91245 0.85624 1.46295 1.71924 1.09442 1.07705 1.21629 1.00311 0.80762 1.02304 1.21601 0.98729 0.97606 0.86911 1.20565 1.08779 1.00318 0.91854 1.42448 1.78079 1.10647 1.05333 1.19225 1.36467 0.93845 0.87345 0.91217 1.24729 1.02190 0.95978 0.98048 1.69656 1.50983 1.08647 1.28800 0.86213 0.77203 0.78869 0.84055 1.21846 1.21822 1.20786 0.92753 0.94602 0.93537 0.92013 0.91644 0.89798 0.91972 0.77115 0.89132 0.88817 0.89890 0.90260 0.86239 0.86243 0.86358 0.93435 0.91670 0.91166 0.93506 0.91703 0.91368 0.86074 0.78294 0.93578 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.86 9.49 37.16 0.35 -2.51 16 2 C 0.17 3.35 2.89 -67.93 -0.20 3.15 16 3 H 0.05 0.97 8.08 -51.93 -0.42 0.55 16 4 C -0.13 -2.02 4.87 -26.73 -0.13 -2.15 16 5 C 0.12 2.04 5.56 -4.04 -0.02 2.02 16 6 N -0.73 -9.79 5.56 -60.29 -0.33 -10.13 16 7 C 0.51 7.34 7.83 -10.98 -0.09 7.26 16 8 O -0.54 -10.40 15.98 5.56 0.09 -10.32 16 9 C -0.13 -1.35 5.68 -27.88 -0.16 -1.51 16 10 C -0.07 -0.73 4.63 -27.88 -0.13 -0.86 16 11 C -0.03 -0.32 5.13 -104.65 -0.54 -0.86 16 12 C -0.17 -1.70 9.70 -39.54 -0.38 -2.08 16 13 C -0.07 -0.63 10.04 -39.61 -0.40 -1.03 16 14 C -0.20 -1.81 9.20 -39.38 -0.36 -2.17 16 15 C 0.21 2.00 6.55 -83.79 -0.55 1.45 16 16 N -0.64 -4.88 3.41 -187.54 -0.64 -5.52 16 17 C 0.09 0.54 10.19 59.85 0.61 1.15 16 18 C 0.09 0.49 10.18 59.85 0.61 1.10 16 19 C -0.19 -1.89 8.86 -39.38 -0.35 -2.24 16 20 N -0.72 -17.86 4.57 -53.42 -0.24 -18.10 16 21 C -0.24 -6.62 9.93 -15.06 -0.15 -6.77 16 22 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.50 13.06 55.49 0.72 -27.77 16 25 Si 0.91 22.84 29.55 -169.99 -5.02 17.82 16 26 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 27 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 28 H -0.28 -6.95 7.11 56.52 0.40 -6.55 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 30 H 0.03 0.52 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.39 16 32 H 0.06 0.78 8.14 -51.93 -0.42 0.35 16 33 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.08 1.77 7.75 -51.93 -0.40 1.37 16 35 H 0.06 1.11 8.14 -51.93 -0.42 0.68 16 36 H 0.40 3.92 8.47 -40.82 -0.35 3.58 16 37 H 0.09 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.09 0.83 8.14 -51.93 -0.42 0.41 16 39 H 0.08 1.01 8.04 -51.93 -0.42 0.59 16 40 H 0.08 0.92 8.04 -51.93 -0.42 0.50 16 41 H 0.12 1.08 8.06 -52.49 -0.42 0.66 16 42 H 0.12 0.82 8.06 -52.49 -0.42 0.40 16 43 H 0.12 0.84 6.16 -52.49 -0.32 0.52 16 44 H 0.05 0.27 8.14 -51.93 -0.42 -0.16 16 45 H 0.06 0.28 8.07 -51.93 -0.42 -0.14 16 46 H 0.07 0.41 6.20 -51.93 -0.32 0.09 16 47 H 0.05 0.22 8.14 -51.92 -0.42 -0.20 16 48 H 0.06 0.25 8.07 -51.93 -0.42 -0.17 16 49 H 0.07 0.33 6.22 -51.93 -0.32 0.01 16 50 H 0.12 1.07 6.15 -52.48 -0.32 0.74 16 51 H 0.38 10.10 7.80 -40.82 -0.32 9.79 16 52 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 LS Contribution 422.40 15.07 6.37 6.37 Total: -1.00 -34.29 422.40 -10.11 -44.40 By element: Atomic # 1 Polarization: 18.86 SS G_CDS: -9.07 Total: 9.79 kcal Atomic # 6 Polarization: -4.57 SS G_CDS: -1.97 Total: -6.54 kcal Atomic # 7 Polarization: -61.02 SS G_CDS: -0.49 Total: -61.52 kcal Atomic # 8 Polarization: -10.40 SS G_CDS: 0.09 Total: -10.32 kcal Atomic # 14 Polarization: 22.84 SS G_CDS: -5.02 Total: 17.82 kcal Total LS contribution 6.37 Total: 6.37 kcal Total: -34.29 -10.11 -44.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480786340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.294 kcal (2) G-P(sol) polarization free energy of solvation -34.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.000 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.402 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.108 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds