Wall clock time and date at job start Tue Mar 31 2020 17:22:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 109.47111 * 2 1 4 4 C 1.53005 * 109.46661 * 240.00209 * 2 1 3 5 5 C 1.53006 * 109.46807 * 174.99837 * 4 2 1 6 6 N 1.46499 * 109.46751 * 179.97438 * 5 4 2 7 7 C 1.34781 * 119.99679 * 179.97438 * 6 5 4 8 8 O 1.21282 * 120.00026 * 0.02562 * 7 6 5 9 9 C 1.50699 * 119.99913 * 180.02562 * 7 6 5 10 10 C 1.52997 * 109.47114 * 180.02562 * 9 7 6 11 11 C 1.50699 * 109.47114 * 179.97438 * 10 9 7 12 12 C 1.38311 * 119.96542 * 270.02404 * 11 10 9 13 13 C 1.38266 * 120.15052 * 179.97438 * 12 11 10 14 14 C 1.38123 * 120.07577 * 359.74818 * 13 12 11 15 15 C 1.38893 * 119.92137 * 0.48472 * 14 13 12 16 16 N 1.39675 * 120.06980 * 179.79253 * 15 14 13 17 17 C 1.46507 * 119.99622 * 179.72195 * 16 15 14 18 18 C 1.46498 * 120.00353 * 359.44307 * 16 15 14 19 19 C 1.38080 * 119.96474 * 90.00088 * 11 10 9 20 20 N 1.46504 * 109.47525 * 120.00554 * 2 1 3 21 21 C 1.36939 * 119.99498 * 275.00171 * 20 2 1 22 22 H 1.07992 * 120.00342 * 359.97438 * 21 20 2 23 23 C 1.38812 * 119.99705 * 179.97438 * 21 20 2 24 24 N 1.31626 * 120.00033 * 359.97438 * 23 21 20 25 25 Si 1.86801 * 120.00213 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47344 * 89.99557 * 25 23 21 27 27 H 1.48501 * 109.46899 * 209.99797 * 25 23 21 28 28 H 1.48501 * 109.46681 * 329.99495 * 25 23 21 29 29 H 1.09004 * 109.46474 * 299.99536 * 1 2 3 30 30 H 1.08995 * 109.47494 * 59.99494 * 1 2 3 31 31 H 1.08996 * 109.47424 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47035 * 55.00317 * 4 2 1 33 33 H 1.08999 * 109.47112 * 294.99781 * 4 2 1 34 34 H 1.09001 * 109.46931 * 60.00416 * 5 4 2 35 35 H 1.08994 * 109.47247 * 300.00331 * 5 4 2 36 36 H 0.97000 * 120.00292 * 0.02562 * 6 5 4 37 37 H 1.09006 * 109.46849 * 59.99968 * 9 7 6 38 38 H 1.08998 * 109.47331 * 300.00747 * 9 7 6 39 39 H 1.09001 * 109.46867 * 60.00395 * 10 9 7 40 40 H 1.08999 * 109.47174 * 299.99923 * 10 9 7 41 41 H 1.08001 * 119.92073 * 359.97438 * 12 11 10 42 42 H 1.07995 * 119.95964 * 179.97438 * 13 12 11 43 43 H 1.08000 * 120.03594 * 180.27150 * 14 13 12 44 44 H 1.09001 * 109.47091 * 90.00293 * 17 16 15 45 45 H 1.09004 * 109.46622 * 209.99851 * 17 16 15 46 46 H 1.08997 * 109.47201 * 329.99553 * 17 16 15 47 47 H 1.09009 * 109.46732 * 90.00268 * 18 16 15 48 48 H 1.08998 * 109.47268 * 209.99630 * 18 16 15 49 49 H 1.08996 * 109.47244 * 330.00204 * 18 16 15 50 50 H 1.08008 * 120.03420 * 0.02562 * 19 11 10 51 51 H 0.97002 * 120.00143 * 94.99247 * 20 2 1 52 52 H 0.96994 * 119.99939 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0399 -0.7212 -1.2493 5 6 3.5648 -0.6133 -1.3138 6 7 4.0530 -1.3044 -2.5097 7 6 5.3739 -1.3398 -2.7755 8 8 6.1583 -0.7999 -2.0243 9 6 5.8762 -2.0502 -4.0059 10 6 7.4010 -1.9423 -4.0704 11 6 7.9033 -2.6533 -5.3005 12 6 8.2315 -3.9954 -5.2372 13 6 8.6922 -4.6516 -6.3636 14 6 8.8213 -3.9696 -7.5578 15 6 8.4972 -2.6206 -7.6237 16 7 8.6307 -1.9269 -8.8286 17 6 8.2826 -0.5054 -8.8979 18 6 9.1245 -2.6190 -10.0216 19 6 8.0350 -1.9642 -6.4899 20 7 2.0184 -0.6907 1.1961 21 6 2.1492 -0.0076 2.3757 22 1 1.8927 1.0403 2.4242 23 6 2.6115 -0.6621 3.5092 24 7 2.9236 -1.9395 3.4502 25 14 2.7906 0.2697 5.1182 26 1 1.5229 0.1796 5.8862 27 1 3.8948 -0.3242 5.9139 28 1 3.0966 1.6947 4.8334 29 1 -0.3632 0.5138 0.8901 30 1 -0.3634 0.5139 -0.8899 31 1 -0.3634 -1.0276 0.0005 32 1 1.6053 -0.2616 -2.1370 33 1 1.7515 -1.7715 -1.2057 34 1 3.9994 -1.0729 -0.4262 35 1 3.8531 0.4369 -1.3574 36 1 3.4257 -1.7358 -3.1107 37 1 5.4412 -1.5909 -4.8936 38 1 5.5880 -3.1005 -3.9622 39 1 7.8355 -2.4020 -3.1827 40 1 7.6894 -0.8921 -4.1140 41 1 8.1276 -4.5320 -4.3056 42 1 8.9480 -5.6995 -6.3105 43 1 9.1771 -4.4839 -8.4383 44 1 9.1616 0.0956 -8.6650 45 1 7.9339 -0.2653 -9.9023 46 1 7.4933 -0.2892 -8.1779 47 1 8.2833 -3.0434 -10.5698 48 1 9.6537 -1.9111 -10.6595 49 1 9.8038 -3.4175 -9.7233 50 1 7.7785 -0.9162 -6.5387 51 1 2.2491 -1.6319 1.1525 52 1 3.2463 -2.3969 4.2423 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480786340.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:45 Heat of formation + Delta-G solvation = -29.568151 kcal Electronic energy + Delta-G solvation = -27375.980481 eV Core-core repulsion = 23567.222243 eV Total energy + Delta-G solvation = -3808.758238 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.93498 -40.38896 -38.16914 -37.38227 -35.80800 -34.63570 -34.10758 -31.57585 -31.05575 -30.50640 -29.54413 -28.78690 -26.03974 -25.66862 -25.43010 -23.64997 -22.47938 -21.79900 -21.12727 -20.82182 -19.27200 -18.33571 -17.74957 -17.10586 -16.92684 -16.74774 -16.43961 -16.33278 -15.91028 -15.80535 -15.35279 -15.18277 -15.06640 -14.71036 -14.54166 -14.14122 -14.05834 -13.70073 -13.66753 -13.54704 -13.41812 -13.22713 -12.89917 -12.81550 -12.80389 -12.70997 -12.62544 -12.33405 -12.27058 -12.20589 -12.11043 -11.91885 -11.63297 -11.61031 -11.59017 -10.96832 -10.85683 -10.63526 -10.04631 -9.62009 -8.97025 -8.15471 -7.92313 -5.18947 0.52648 0.73811 1.45655 1.47567 1.55397 1.69400 2.25429 2.30377 2.57246 2.98896 3.41728 3.69232 3.93024 3.96894 4.01499 4.03825 4.12641 4.19468 4.25256 4.31276 4.38139 4.41464 4.45661 4.54565 4.60543 4.65822 4.67734 4.69048 4.78989 4.79167 4.82802 4.91410 4.91938 4.93140 5.04033 5.07585 5.12242 5.13558 5.21934 5.25818 5.40944 5.41750 5.51796 5.54669 5.62729 5.68460 5.85875 6.00471 6.30798 6.39308 6.60297 6.63621 7.34564 7.36642 8.15018 8.36132 9.31214 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019362 B = 0.001735 C = 0.001668 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1445.768467 B =16135.904612 C =16783.561610 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.162 3.838 3 H 0.041 0.959 4 C -0.115 4.115 5 C 0.132 3.868 6 N -0.715 5.715 7 C 0.501 3.499 8 O -0.594 6.594 9 C -0.117 4.117 10 C -0.062 4.062 11 C -0.038 4.038 12 C -0.189 4.189 13 C -0.073 4.073 14 C -0.210 4.210 15 C 0.205 3.795 16 N -0.647 5.647 17 C 0.088 3.912 18 C 0.090 3.910 19 C -0.204 4.204 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.079 4.079 24 N -0.970 5.970 25 Si 0.967 3.033 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.272 1.272 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.105 0.895 33 H 0.071 0.929 34 H 0.033 0.967 35 H 0.048 0.952 36 H 0.417 0.583 37 H 0.119 0.881 38 H 0.114 0.886 39 H 0.063 0.937 40 H 0.067 0.933 41 H 0.121 0.879 42 H 0.139 0.861 43 H 0.136 0.864 44 H 0.047 0.953 45 H 0.083 0.917 46 H 0.067 0.933 47 H 0.053 0.947 48 H 0.079 0.921 49 H 0.070 0.930 50 H 0.126 0.874 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.347 -2.815 -33.087 34.240 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.059 0.941 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.368 5.368 7 C 0.290 3.710 8 O -0.474 6.474 9 C -0.157 4.157 10 C -0.100 4.100 11 C -0.039 4.039 12 C -0.209 4.209 13 C -0.092 4.092 14 C -0.233 4.233 15 C 0.102 3.898 16 N -0.358 5.358 17 C -0.054 4.054 18 C -0.053 4.053 19 C -0.227 4.227 20 N -0.375 5.375 21 C -0.366 4.366 22 H 0.092 0.908 23 C -0.271 4.271 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.197 1.197 29 H 0.051 0.949 30 H 0.094 0.906 31 H 0.064 0.936 32 H 0.124 0.876 33 H 0.090 0.910 34 H 0.051 0.949 35 H 0.067 0.933 36 H 0.254 0.746 37 H 0.137 0.863 38 H 0.132 0.868 39 H 0.082 0.918 40 H 0.085 0.915 41 H 0.139 0.861 42 H 0.156 0.844 43 H 0.153 0.847 44 H 0.066 0.934 45 H 0.101 0.899 46 H 0.086 0.914 47 H 0.071 0.929 48 H 0.098 0.902 49 H 0.089 0.911 50 H 0.144 0.856 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 8.904 -2.151 -32.646 33.907 hybrid contribution 0.059 -0.109 1.347 1.352 sum 8.963 -2.260 -31.300 32.636 Atomic orbital electron populations 1.22256 0.97086 1.01045 1.00855 1.20479 0.93193 0.95182 0.85760 0.94052 1.21907 0.92523 1.02038 0.98845 1.21072 0.95327 0.96035 0.86799 1.45954 1.07648 1.56528 1.26645 1.21458 0.82123 0.79709 0.87751 1.90717 1.56628 1.48191 1.51908 1.21593 0.96165 1.02737 0.95176 1.20236 0.94052 1.00482 0.95206 1.19576 0.96568 0.93934 0.93787 1.21008 1.05939 0.94428 0.99517 1.21121 0.96034 1.00207 0.91807 1.20897 1.09563 0.93121 0.99690 1.17989 0.93852 0.91698 0.86222 1.46553 1.71504 1.10076 1.07703 1.21741 1.00324 0.80013 1.03354 1.21756 0.99148 0.98061 0.86314 1.20652 1.09372 1.00659 0.91991 1.42646 1.78379 1.10225 1.06286 1.19610 1.34365 0.94101 0.88482 0.90820 1.25503 1.03353 0.96913 1.01373 1.69810 1.52976 1.10139 1.29161 0.85223 0.76832 0.78019 0.80244 1.21285 1.22616 1.19688 0.94915 0.90553 0.93624 0.87643 0.90997 0.94869 0.93327 0.74554 0.86269 0.86816 0.91824 0.91456 0.86087 0.84353 0.84676 0.93398 0.89865 0.91425 0.92876 0.90198 0.91111 0.85607 0.79665 0.94302 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.01 9.49 71.98 0.68 -4.33 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.04 1.62 8.08 -2.39 -0.02 1.60 16 4 C -0.11 -3.29 4.87 30.60 0.15 -3.14 16 5 C 0.13 4.44 5.56 86.38 0.48 4.92 16 6 N -0.72 -18.35 5.56 -463.05 -2.57 -20.92 16 7 C 0.50 14.49 7.83 87.66 0.69 15.17 16 8 O -0.59 -23.93 15.98 -3.03 -0.05 -23.98 16 9 C -0.12 -2.24 5.68 29.85 0.17 -2.07 16 10 C -0.06 -1.37 4.63 29.85 0.14 -1.23 16 11 C -0.04 -0.76 5.13 -19.88 -0.10 -0.86 16 12 C -0.19 -3.60 9.70 22.29 0.22 -3.39 16 13 C -0.07 -1.20 10.04 22.25 0.22 -0.98 16 14 C -0.21 -3.38 9.20 22.40 0.21 -3.18 16 15 C 0.20 3.56 6.55 38.21 0.25 3.81 16 16 N -0.65 -8.66 3.41 -747.26 -2.55 -11.21 16 17 C 0.09 0.88 10.19 127.77 1.30 2.18 16 18 C 0.09 0.73 10.18 127.77 1.30 2.03 16 19 C -0.20 -3.83 8.86 22.40 0.20 -3.63 16 20 N -0.73 -36.80 4.57 -322.93 -1.48 -38.27 16 21 C -0.23 -13.18 9.93 84.03 0.83 -12.34 16 22 H 0.07 4.01 7.83 -2.91 -0.02 3.99 16 23 C -0.08 -4.69 5.50 84.86 0.47 -4.23 16 24 N -0.97 -61.03 13.06 21.65 0.28 -60.74 16 25 Si 0.97 47.83 29.55 68.60 2.03 49.85 16 26 H -0.29 -13.75 7.11 99.48 0.71 -13.05 16 27 H -0.30 -15.04 7.11 99.48 0.71 -14.33 16 28 H -0.27 -12.80 7.11 99.48 0.71 -12.10 16 29 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 30 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 31 H 0.04 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.18 8.14 -2.39 -0.02 2.16 16 33 H 0.07 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.03 1.46 7.75 -2.39 -0.02 1.44 16 35 H 0.05 1.75 8.14 -2.39 -0.02 1.74 16 36 H 0.42 7.08 8.47 -92.71 -0.79 6.29 16 37 H 0.12 1.65 8.14 -2.38 -0.02 1.63 16 38 H 0.11 1.78 8.14 -2.39 -0.02 1.77 16 39 H 0.06 1.63 8.04 -2.39 -0.02 1.61 16 40 H 0.07 1.63 8.04 -2.39 -0.02 1.61 16 41 H 0.12 2.17 8.06 -2.91 -0.02 2.15 16 42 H 0.14 1.65 8.06 -2.91 -0.02 1.62 16 43 H 0.14 1.62 6.16 -2.91 -0.02 1.61 16 44 H 0.05 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.08 0.52 8.07 -2.38 -0.02 0.50 16 46 H 0.07 0.70 6.20 -2.39 -0.01 0.69 16 47 H 0.05 0.38 8.14 -2.38 -0.02 0.36 16 48 H 0.08 0.41 8.07 -2.39 -0.02 0.39 16 49 H 0.07 0.54 6.22 -2.39 -0.01 0.52 16 50 H 0.13 2.13 6.15 -2.91 -0.02 2.11 16 51 H 0.37 20.13 7.80 -92.71 -0.72 19.41 16 52 H 0.25 15.25 8.31 -92.71 -0.77 14.48 16 Total: -1.00 -77.51 422.40 2.39 -75.11 By element: Atomic # 1 Polarization: 35.79 SS G_CDS: -0.60 Total: 35.18 kcal Atomic # 6 Polarization: -12.36 SS G_CDS: 7.33 Total: -5.03 kcal Atomic # 7 Polarization: -124.83 SS G_CDS: -6.31 Total: -131.14 kcal Atomic # 8 Polarization: -23.93 SS G_CDS: -0.05 Total: -23.98 kcal Atomic # 14 Polarization: 47.83 SS G_CDS: 2.03 Total: 49.85 kcal Total: -77.51 2.39 -75.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480786340.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.545 kcal (2) G-P(sol) polarization free energy of solvation -77.507 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.962 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.113 kcal (6) G-S(sol) free energy of system = (1) + (5) -29.568 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds