Wall clock time and date at job start Tue Mar 31 2020 17:22:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.52998 * 109.47324 * 240.00211 * 2 1 3 5 5 C 1.52999 * 109.47306 * 174.99515 * 4 2 1 6 6 N 1.46505 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.47849 * 119.99699 * 179.72334 * 7 6 5 10 10 C 1.39579 * 120.14305 * 359.97438 * 9 7 6 11 11 C 1.37953 * 119.85070 * 179.76580 * 10 9 7 12 12 C 1.38367 * 120.14581 * 0.50841 * 11 10 9 13 13 C 1.50701 * 119.85465 * 179.76158 * 12 11 10 14 14 C 1.52997 * 109.47124 * 269.98171 * 13 12 11 15 15 N 1.46907 * 109.46770 * 179.97438 * 14 13 12 16 16 C 1.46903 * 110.99843 * 170.00066 * 15 14 13 17 17 C 1.46895 * 111.00127 * 293.95474 * 15 14 13 18 18 C 1.38360 * 120.29116 * 359.74659 * 12 11 10 19 19 C 1.37965 * 120.14340 * 359.97438 * 18 12 11 20 20 N 1.46502 * 109.47157 * 120.00188 * 2 1 3 21 21 C 1.36932 * 120.00017 * 274.99905 * 20 2 1 22 22 H 1.08004 * 119.99958 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00129 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99661 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00152 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47464 * 89.99971 * 25 23 21 27 27 H 1.48499 * 109.47156 * 210.00195 * 25 23 21 28 28 H 1.48507 * 109.47057 * 330.00139 * 25 23 21 29 29 H 1.08990 * 109.47349 * 299.99648 * 1 2 3 30 30 H 1.09004 * 109.46871 * 59.99912 * 1 2 3 31 31 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47241 * 54.99949 * 4 2 1 33 33 H 1.08993 * 109.47193 * 295.00174 * 4 2 1 34 34 H 1.09003 * 109.46803 * 60.00732 * 5 4 2 35 35 H 1.08993 * 109.47533 * 300.00451 * 5 4 2 36 36 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 37 37 H 1.07997 * 120.07561 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.92909 * 180.23334 * 11 10 9 39 39 H 1.09004 * 109.46760 * 29.97965 * 13 12 11 40 40 H 1.08999 * 109.46674 * 149.98222 * 13 12 11 41 41 H 1.08994 * 109.47262 * 300.00108 * 14 13 12 42 42 H 1.08999 * 109.47303 * 60.00436 * 14 13 12 43 43 H 1.08997 * 109.47053 * 59.99933 * 16 15 14 44 44 H 1.09001 * 109.47231 * 180.02562 * 16 15 14 45 45 H 1.08998 * 109.46925 * 300.00163 * 16 15 14 46 46 H 1.08997 * 109.47409 * 59.99970 * 17 15 14 47 47 H 1.09004 * 109.47440 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.46975 * 299.99938 * 17 15 14 49 49 H 1.07999 * 119.92740 * 179.97438 * 18 12 11 50 50 H 1.07998 * 120.06931 * 179.97438 * 19 18 12 51 51 H 0.97003 * 119.99694 * 95.00257 * 20 2 1 52 52 H 0.97005 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 7 4.0532 -1.3032 -2.5103 7 6 5.3741 -1.3392 -2.7755 8 8 6.1602 -0.7987 -2.0222 9 6 5.8674 -2.0408 -3.9798 10 6 4.9678 -2.6673 -4.8437 11 6 5.4343 -3.3161 -5.9683 12 6 6.7914 -3.3557 -6.2349 13 6 7.2943 -4.0709 -7.4624 14 6 7.5783 -5.5346 -7.1194 15 7 8.0679 -6.2318 -8.3162 16 6 8.5739 -7.5685 -7.9766 17 6 7.0218 -6.3105 -9.3444 18 6 7.6889 -2.7412 -5.3798 19 6 7.2351 -2.0840 -4.2548 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0076 2.3757 22 1 1.8919 1.0402 2.4243 23 6 2.6113 -0.6621 3.5092 24 7 2.9243 -1.9391 3.4500 25 14 2.7891 0.2695 5.1185 26 1 1.5211 0.1783 5.8860 27 1 3.8934 -0.3238 5.9146 28 1 3.0942 1.6949 4.8342 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2616 -2.1370 33 1 1.7517 -1.7714 -1.2057 34 1 3.9995 -1.0727 -0.4261 35 1 3.8532 0.4371 -1.3573 36 1 3.4258 -1.7341 -3.1116 37 1 3.9087 -2.6414 -4.6341 38 1 4.7391 -3.7981 -6.6396 39 1 6.5388 -4.0215 -8.2467 40 1 8.2109 -3.5947 -7.8103 41 1 8.3336 -5.5840 -6.3351 42 1 6.6616 -6.0107 -6.7715 43 1 7.7724 -8.1582 -7.5318 44 1 8.9304 -8.0625 -8.8804 45 1 9.3948 -7.4764 -7.2654 46 1 6.7143 -5.3039 -9.6277 47 1 7.4107 -6.8317 -10.2193 48 1 6.1641 -6.8548 -8.9492 49 1 8.7470 -2.7760 -5.5934 50 1 7.9367 -1.6051 -3.5879 51 1 2.2491 -1.6318 1.1525 52 1 3.2470 -2.3966 4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480792667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:36 Heat of formation + Delta-G solvation = -8.398290 kcal Electronic energy + Delta-G solvation = -27372.593797 eV Core-core repulsion = 23564.753553 eV Total energy + Delta-G solvation = -3807.840244 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.40 seconds Orbital eigenvalues (eV) -40.28997 -38.88911 -37.74340 -36.54917 -34.43201 -33.49951 -32.24663 -31.20422 -29.84580 -28.90664 -28.06333 -27.92713 -25.41974 -23.90808 -23.09578 -22.87456 -22.04885 -21.26835 -20.40254 -19.68586 -18.00053 -17.16260 -16.38629 -16.29940 -15.75566 -15.44524 -15.36658 -15.05213 -14.88750 -14.69309 -14.63611 -13.97779 -13.86194 -13.51639 -13.44138 -13.33136 -13.25465 -12.92042 -12.72397 -12.47237 -12.33353 -12.21231 -12.02632 -11.90589 -11.59303 -11.51581 -11.48802 -11.08261 -11.06628 -10.89896 -10.73353 -10.61527 -10.28538 -10.00479 -9.71747 -9.61204 -9.23205 -9.05655 -8.89485 -8.85194 -8.73293 -6.92901 -5.72681 -3.01346 0.66108 1.13908 2.84071 3.29860 3.46115 3.46891 3.52273 3.53983 3.75615 4.39669 4.48367 4.62202 4.63071 4.65731 4.70973 4.73246 4.89392 4.92121 5.07246 5.09592 5.13566 5.17880 5.24067 5.30349 5.40693 5.41991 5.43408 5.52529 5.56800 5.58382 5.68411 5.70720 5.76682 5.89178 6.04545 6.08069 6.16208 6.20214 6.27765 6.36111 6.40986 6.48813 6.51429 6.52379 6.63415 6.69403 6.73271 6.87652 7.07291 7.64560 7.74292 8.35845 8.45610 9.56992 10.13621 10.48198 11.49943 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018329 B = 0.001759 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.283648 B =15916.975697 C =16322.627342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.174 3.826 3 H 0.049 0.951 4 C -0.132 4.132 5 C 0.121 3.879 6 N -0.723 5.723 7 C 0.550 3.450 8 O -0.533 6.533 9 C -0.130 4.130 10 C -0.085 4.085 11 C -0.125 4.125 12 C -0.063 4.063 13 C -0.079 4.079 14 C 0.059 3.941 15 N -0.549 5.549 16 C 0.023 3.977 17 C 0.019 3.981 18 C -0.123 4.123 19 C -0.058 4.058 20 N -0.723 5.723 21 C -0.238 4.238 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.291 1.291 27 H -0.292 1.292 28 H -0.282 1.282 29 H 0.054 0.946 30 H 0.035 0.965 31 H 0.045 0.955 32 H 0.062 0.938 33 H 0.065 0.935 34 H 0.086 0.914 35 H 0.065 0.935 36 H 0.395 0.605 37 H 0.126 0.874 38 H 0.125 0.875 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.078 0.922 42 H 0.038 0.962 43 H 0.026 0.974 44 H 0.068 0.932 45 H 0.069 0.931 46 H 0.071 0.929 47 H 0.067 0.933 48 H 0.026 0.974 49 H 0.129 0.871 50 H 0.137 0.863 51 H 0.383 0.617 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 6.536 -8.096 -28.669 30.499 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C 0.063 3.937 3 H 0.067 0.933 4 C -0.171 4.171 5 C -0.001 4.001 6 N -0.374 5.374 7 C 0.337 3.663 8 O -0.411 6.411 9 C -0.133 4.133 10 C -0.103 4.103 11 C -0.143 4.143 12 C -0.064 4.064 13 C -0.117 4.117 14 C -0.069 4.069 15 N -0.273 5.273 16 C -0.125 4.125 17 C -0.129 4.129 18 C -0.141 4.141 19 C -0.077 4.077 20 N -0.365 5.365 21 C -0.369 4.369 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.581 5.581 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 H 0.073 0.927 30 H 0.054 0.946 31 H 0.065 0.935 32 H 0.081 0.919 33 H 0.084 0.916 34 H 0.104 0.896 35 H 0.083 0.917 36 H 0.229 0.771 37 H 0.144 0.856 38 H 0.143 0.857 39 H 0.093 0.907 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.056 0.944 43 H 0.045 0.955 44 H 0.087 0.913 45 H 0.088 0.912 46 H 0.090 0.910 47 H 0.086 0.914 48 H 0.045 0.955 49 H 0.147 0.853 50 H 0.155 0.845 51 H 0.217 0.783 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges 7.504 -7.302 -28.145 30.029 hybrid contribution -0.979 -0.614 1.042 1.556 sum 6.525 -7.916 -27.102 28.979 Atomic orbital electron populations 1.22422 0.99132 1.00810 0.99957 1.20154 0.91878 0.95606 0.86012 0.93252 1.22064 0.93867 1.01802 0.99382 1.21491 0.94431 0.97228 0.86949 1.46046 1.06981 1.56899 1.27522 1.18274 0.82608 0.80300 0.85132 1.90806 1.55333 1.45792 1.49130 1.20074 0.94696 1.02072 0.96482 1.21304 0.99263 0.95925 0.93857 1.20944 0.95051 1.00552 0.97732 1.20011 0.93473 0.96846 0.96102 1.20636 1.02179 0.94220 0.94621 1.22140 0.99293 0.93395 0.92085 1.61989 1.35923 1.18672 1.10684 1.22389 0.99611 0.88954 1.01532 1.22464 0.93011 1.02160 0.95286 1.21048 0.99818 0.98615 0.94591 1.21319 0.94554 0.95744 0.96095 1.42448 1.78087 1.10648 1.05337 1.19226 1.36486 0.93866 0.87329 0.91194 1.24729 1.02172 0.95979 0.98061 1.69657 1.50951 1.08671 1.28803 0.86210 0.77199 0.78877 0.84033 1.21844 1.21829 1.20764 0.92714 0.94587 0.93543 0.91930 0.91607 0.89559 0.91675 0.77080 0.85572 0.85687 0.90732 0.89822 0.90358 0.94418 0.95545 0.91278 0.91191 0.90993 0.91389 0.95547 0.85314 0.84513 0.78297 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.84 9.49 37.16 0.35 -2.49 16 2 C 0.17 3.34 2.89 -67.93 -0.20 3.14 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 C -0.13 -2.02 4.87 -26.73 -0.13 -2.16 16 5 C 0.12 2.06 5.56 -4.04 -0.02 2.03 16 6 N -0.72 -10.16 5.51 -61.25 -0.34 -10.49 16 7 C 0.55 8.72 7.77 -12.33 -0.10 8.63 16 8 O -0.53 -10.79 16.35 5.32 0.09 -10.70 16 9 C -0.13 -1.62 5.87 -104.97 -0.62 -2.24 16 10 C -0.08 -0.81 9.54 -39.19 -0.37 -1.18 16 11 C -0.12 -1.02 9.68 -39.64 -0.38 -1.40 16 12 C -0.06 -0.51 5.14 -104.53 -0.54 -1.05 16 13 C -0.08 -0.50 5.26 -27.88 -0.15 -0.65 16 14 C 0.06 0.39 4.94 -3.82 -0.02 0.37 16 15 N -0.55 -3.63 5.02 -251.26 -1.26 -4.90 16 16 C 0.02 0.13 9.57 60.07 0.57 0.71 16 17 C 0.02 0.10 9.32 60.06 0.56 0.66 16 18 C -0.12 -1.11 9.68 -39.64 -0.38 -1.50 16 19 C -0.06 -0.68 9.60 -39.18 -0.38 -1.05 16 20 N -0.72 -17.79 4.57 -53.43 -0.24 -18.04 16 21 C -0.24 -6.61 9.93 -15.06 -0.15 -6.76 16 22 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 23 C -0.01 -0.39 5.50 -17.43 -0.10 -0.49 16 24 N -0.93 -28.47 13.06 55.49 0.72 -27.74 16 25 Si 0.91 22.81 29.55 -169.99 -5.02 17.78 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.45 7.11 56.52 0.40 -7.05 16 28 H -0.28 -6.93 7.11 56.52 0.40 -6.53 16 29 H 0.05 1.04 8.14 -51.93 -0.42 0.62 16 30 H 0.04 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.05 0.81 8.14 -51.93 -0.42 0.38 16 32 H 0.06 0.78 8.14 -51.92 -0.42 0.36 16 33 H 0.07 0.99 8.14 -51.93 -0.42 0.57 16 34 H 0.09 1.82 7.75 -51.93 -0.40 1.42 16 35 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 36 H 0.39 4.16 6.51 -40.82 -0.27 3.89 16 37 H 0.13 0.93 6.41 -52.49 -0.34 0.60 16 38 H 0.13 0.75 8.06 -52.49 -0.42 0.32 16 39 H 0.07 0.42 6.49 -51.93 -0.34 0.08 16 40 H 0.08 0.53 8.08 -51.93 -0.42 0.11 16 41 H 0.08 0.55 8.06 -51.93 -0.42 0.13 16 42 H 0.04 0.27 8.12 -51.93 -0.42 -0.15 16 43 H 0.03 0.15 8.14 -51.93 -0.42 -0.27 16 44 H 0.07 0.33 8.12 -51.93 -0.42 -0.09 16 45 H 0.07 0.38 8.12 -51.93 -0.42 -0.05 16 46 H 0.07 0.34 6.47 -51.93 -0.34 0.01 16 47 H 0.07 0.31 8.12 -51.93 -0.42 -0.11 16 48 H 0.03 0.14 8.14 -51.93 -0.42 -0.28 16 49 H 0.13 0.92 8.06 -52.49 -0.42 0.50 16 50 H 0.14 1.66 7.65 -52.49 -0.40 1.26 16 51 H 0.38 10.07 7.80 -40.82 -0.32 9.75 16 52 H 0.25 7.56 8.31 -40.82 -0.34 7.22 16 LS Contribution 423.17 15.07 6.38 6.38 Total: -1.00 -33.61 423.17 -10.83 -44.44 By element: Atomic # 1 Polarization: 17.79 SS G_CDS: -9.12 Total: 8.68 kcal Atomic # 6 Polarization: -3.37 SS G_CDS: -2.04 Total: -5.41 kcal Atomic # 7 Polarization: -60.05 SS G_CDS: -1.12 Total: -61.17 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.81 SS G_CDS: -5.02 Total: 17.78 kcal Total LS contribution 6.38 Total: 6.38 kcal Total: -33.61 -10.83 -44.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480792667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.045 kcal (2) G-P(sol) polarization free energy of solvation -33.610 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.435 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.833 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.443 kcal (6) G-S(sol) free energy of system = (1) + (5) -8.398 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.40 seconds