Wall clock time and date at job start Tue Mar 31 2020 17:22:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09001 * 109.47128 * 2 1 4 4 C 1.52998 * 109.47324 * 240.00211 * 2 1 3 5 5 C 1.52999 * 109.47306 * 174.99515 * 4 2 1 6 6 N 1.46505 * 109.47192 * 180.02562 * 5 4 2 7 7 C 1.34777 * 119.99724 * 180.02562 * 6 5 4 8 8 O 1.21553 * 120.00290 * 359.97438 * 7 6 5 9 9 C 1.47849 * 119.99699 * 179.72334 * 7 6 5 10 10 C 1.39579 * 120.14305 * 359.97438 * 9 7 6 11 11 C 1.37953 * 119.85070 * 179.76580 * 10 9 7 12 12 C 1.38367 * 120.14581 * 0.50841 * 11 10 9 13 13 C 1.50701 * 119.85465 * 179.76158 * 12 11 10 14 14 C 1.52997 * 109.47124 * 269.98171 * 13 12 11 15 15 N 1.46907 * 109.46770 * 179.97438 * 14 13 12 16 16 C 1.46903 * 110.99843 * 170.00066 * 15 14 13 17 17 C 1.46895 * 111.00127 * 293.95474 * 15 14 13 18 18 C 1.38360 * 120.29116 * 359.74659 * 12 11 10 19 19 C 1.37965 * 120.14340 * 359.97438 * 18 12 11 20 20 N 1.46502 * 109.47157 * 120.00188 * 2 1 3 21 21 C 1.36932 * 120.00017 * 274.99905 * 20 2 1 22 22 H 1.08004 * 119.99958 * 0.02562 * 21 20 2 23 23 C 1.38811 * 120.00129 * 179.97438 * 21 20 2 24 24 N 1.31618 * 119.99661 * 0.02562 * 23 21 20 25 25 Si 1.86796 * 120.00152 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47464 * 89.99971 * 25 23 21 27 27 H 1.48499 * 109.47156 * 210.00195 * 25 23 21 28 28 H 1.48507 * 109.47057 * 330.00139 * 25 23 21 29 29 H 1.08990 * 109.47349 * 299.99648 * 1 2 3 30 30 H 1.09004 * 109.46871 * 59.99912 * 1 2 3 31 31 H 1.09001 * 109.46699 * 179.97438 * 1 2 3 32 32 H 1.09009 * 109.47241 * 54.99949 * 4 2 1 33 33 H 1.08993 * 109.47193 * 295.00174 * 4 2 1 34 34 H 1.09003 * 109.46803 * 60.00732 * 5 4 2 35 35 H 1.08993 * 109.47533 * 300.00451 * 5 4 2 36 36 H 0.97000 * 119.99792 * 0.02562 * 6 5 4 37 37 H 1.07997 * 120.07561 * 359.97438 * 10 9 7 38 38 H 1.07996 * 119.92909 * 180.23334 * 11 10 9 39 39 H 1.09004 * 109.46760 * 29.97965 * 13 12 11 40 40 H 1.08999 * 109.46674 * 149.98222 * 13 12 11 41 41 H 1.08994 * 109.47262 * 300.00108 * 14 13 12 42 42 H 1.08999 * 109.47303 * 60.00436 * 14 13 12 43 43 H 1.08997 * 109.47053 * 59.99933 * 16 15 14 44 44 H 1.09001 * 109.47231 * 180.02562 * 16 15 14 45 45 H 1.08998 * 109.46925 * 300.00163 * 16 15 14 46 46 H 1.08997 * 109.47409 * 59.99970 * 17 15 14 47 47 H 1.09004 * 109.47440 * 180.02562 * 17 15 14 48 48 H 1.09003 * 109.46975 * 299.99938 * 17 15 14 49 49 H 1.07999 * 119.92740 * 179.97438 * 18 12 11 50 50 H 1.07998 * 120.06931 * 179.97438 * 19 18 12 51 51 H 0.97003 * 119.99694 * 95.00257 * 20 2 1 52 52 H 0.97005 * 119.99786 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7212 -1.2492 5 6 3.5648 -0.6131 -1.3137 6 7 4.0532 -1.3032 -2.5103 7 6 5.3741 -1.3392 -2.7755 8 8 6.1602 -0.7987 -2.0222 9 6 5.8674 -2.0408 -3.9798 10 6 4.9678 -2.6673 -4.8437 11 6 5.4343 -3.3161 -5.9683 12 6 6.7914 -3.3557 -6.2349 13 6 7.2943 -4.0709 -7.4624 14 6 7.5783 -5.5346 -7.1194 15 7 8.0679 -6.2318 -8.3162 16 6 8.5739 -7.5685 -7.9766 17 6 7.0218 -6.3105 -9.3444 18 6 7.6889 -2.7412 -5.3798 19 6 7.2351 -2.0840 -4.2548 20 7 2.0183 -0.6907 1.1962 21 6 2.1491 -0.0076 2.3757 22 1 1.8919 1.0402 2.4243 23 6 2.6113 -0.6621 3.5092 24 7 2.9243 -1.9391 3.4500 25 14 2.7891 0.2695 5.1185 26 1 1.5211 0.1783 5.8860 27 1 3.8934 -0.3238 5.9146 28 1 3.0942 1.6949 4.8342 29 1 -0.3633 0.5137 0.8899 30 1 -0.3633 0.5139 -0.8900 31 1 -0.3633 -1.0277 -0.0005 32 1 1.6054 -0.2616 -2.1370 33 1 1.7517 -1.7714 -1.2057 34 1 3.9995 -1.0727 -0.4261 35 1 3.8532 0.4371 -1.3573 36 1 3.4258 -1.7341 -3.1116 37 1 3.9087 -2.6414 -4.6341 38 1 4.7391 -3.7981 -6.6396 39 1 6.5388 -4.0215 -8.2467 40 1 8.2109 -3.5947 -7.8103 41 1 8.3336 -5.5840 -6.3351 42 1 6.6616 -6.0107 -6.7715 43 1 7.7724 -8.1582 -7.5318 44 1 8.9304 -8.0625 -8.8804 45 1 9.3948 -7.4764 -7.2654 46 1 6.7143 -5.3039 -9.6277 47 1 7.4107 -6.8317 -10.2193 48 1 6.1641 -6.8548 -8.9492 49 1 8.7470 -2.7760 -5.5934 50 1 7.9367 -1.6051 -3.5879 51 1 2.2491 -1.6318 1.1525 52 1 3.2470 -2.3966 4.2422 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480792667.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:22:35 Heat of formation + Delta-G solvation = -30.986675 kcal Electronic energy + Delta-G solvation = -27373.573303 eV Core-core repulsion = 23564.753553 eV Total energy + Delta-G solvation = -3808.819750 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -41.30058 -39.81264 -38.35673 -38.07583 -35.93750 -34.38571 -33.96937 -32.01369 -31.16479 -30.23464 -29.20475 -28.43993 -26.21004 -25.74039 -24.30010 -23.61666 -23.03807 -22.00033 -21.55673 -20.99395 -19.36174 -18.90407 -17.36211 -16.95380 -16.91457 -16.45510 -16.39576 -15.96721 -15.88887 -15.69194 -15.64391 -15.37261 -15.30976 -14.60248 -14.57779 -14.34159 -14.09455 -14.02952 -13.74417 -13.55878 -13.25286 -13.21539 -12.85779 -12.81864 -12.69559 -12.63544 -12.45440 -12.30938 -12.25404 -12.17726 -12.15656 -12.10097 -11.65199 -11.63328 -11.60475 -11.05739 -10.92484 -10.22902 -9.96808 -9.70707 -9.30944 -8.97964 -7.93067 -5.19705 -0.19114 0.40424 1.45154 1.47094 1.54921 1.79937 2.11968 2.56653 2.81126 3.04759 3.41088 3.65864 3.78716 3.90876 3.96246 3.99078 4.02200 4.09623 4.20635 4.23848 4.32913 4.36186 4.42427 4.48790 4.52090 4.62951 4.66469 4.72296 4.75560 4.75858 4.83955 4.89023 4.94552 5.01746 5.02798 5.04845 5.09766 5.10202 5.19493 5.21110 5.29895 5.37890 5.40121 5.42531 5.53890 5.59663 5.61979 5.91580 6.06581 6.10469 6.29978 6.51487 7.18188 7.35872 8.14148 8.35200 9.30472 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018329 B = 0.001759 C = 0.001715 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1527.283648 B =15916.975697 C =16322.627342 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.163 3.837 3 H 0.042 0.958 4 C -0.115 4.115 5 C 0.132 3.868 6 N -0.707 5.707 7 C 0.545 3.455 8 O -0.591 6.591 9 C -0.155 4.155 10 C -0.079 4.079 11 C -0.120 4.120 12 C -0.053 4.053 13 C -0.072 4.072 14 C 0.061 3.939 15 N -0.560 5.560 16 C 0.022 3.978 17 C 0.018 3.982 18 C -0.123 4.123 19 C -0.077 4.077 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.074 0.926 23 C -0.080 4.080 24 N -0.970 5.970 25 Si 0.967 3.033 26 H -0.286 1.286 27 H -0.300 1.300 28 H -0.272 1.272 29 H 0.032 0.968 30 H 0.076 0.924 31 H 0.045 0.955 32 H 0.107 0.893 33 H 0.073 0.927 34 H 0.036 0.964 35 H 0.052 0.948 36 H 0.415 0.585 37 H 0.150 0.850 38 H 0.157 0.843 39 H 0.090 0.910 40 H 0.086 0.914 41 H 0.070 0.930 42 H 0.035 0.965 43 H 0.025 0.975 44 H 0.077 0.923 45 H 0.068 0.932 46 H 0.079 0.921 47 H 0.073 0.927 48 H 0.026 0.974 49 H 0.146 0.854 50 H 0.117 0.883 51 H 0.371 0.629 52 H 0.248 0.752 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 5.052 -8.401 -31.942 33.412 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C 0.054 3.946 3 H 0.060 0.940 4 C -0.153 4.153 5 C 0.008 3.992 6 N -0.359 5.359 7 C 0.334 3.666 8 O -0.473 6.473 9 C -0.158 4.158 10 C -0.097 4.097 11 C -0.138 4.138 12 C -0.054 4.054 13 C -0.109 4.109 14 C -0.067 4.067 15 N -0.284 5.284 16 C -0.126 4.126 17 C -0.130 4.130 18 C -0.141 4.141 19 C -0.096 4.096 20 N -0.376 5.376 21 C -0.365 4.365 22 H 0.092 0.908 23 C -0.272 4.272 24 N -0.621 5.621 25 Si 0.797 3.203 26 H -0.213 1.213 27 H -0.227 1.227 28 H -0.197 1.197 29 H 0.051 0.949 30 H 0.095 0.905 31 H 0.064 0.936 32 H 0.125 0.875 33 H 0.092 0.908 34 H 0.055 0.945 35 H 0.070 0.930 36 H 0.254 0.746 37 H 0.168 0.832 38 H 0.175 0.825 39 H 0.108 0.892 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.053 0.947 43 H 0.043 0.957 44 H 0.095 0.905 45 H 0.087 0.913 46 H 0.098 0.902 47 H 0.092 0.908 48 H 0.045 0.955 49 H 0.163 0.837 50 H 0.135 0.865 51 H 0.203 0.797 52 H 0.057 0.943 Dipole moment (debyes) X Y Z Total from point charges 5.959 -7.589 -31.486 32.931 hybrid contribution -0.496 -0.528 1.890 2.024 sum 5.463 -8.116 -29.596 31.172 Atomic orbital electron populations 1.22251 0.96954 1.01090 1.00908 1.20472 0.93274 0.95195 0.85625 0.93962 1.21921 0.92130 1.02217 0.99075 1.21149 0.95609 0.96134 0.86291 1.45805 1.07020 1.56312 1.26752 1.18925 0.82527 0.79531 0.85617 1.90767 1.56747 1.48436 1.51338 1.19886 0.95543 1.04126 0.96228 1.21540 0.99925 0.94864 0.93412 1.21310 0.95552 0.99574 0.97367 1.20287 0.93540 0.95549 0.96046 1.20612 1.02738 0.93638 0.93926 1.22082 0.98947 0.93556 0.92106 1.62006 1.36497 1.19085 1.10817 1.22417 0.99531 0.88711 1.01940 1.22516 0.92705 1.02740 0.95078 1.21219 1.01068 0.98049 0.93736 1.21321 0.94282 0.96909 0.97102 1.42648 1.78391 1.10227 1.06295 1.19615 1.34334 0.94129 0.88456 0.90767 1.25504 1.03356 0.96913 1.01397 1.69812 1.52979 1.10175 1.29154 0.85218 0.76823 0.78027 0.80225 1.21263 1.22660 1.19663 0.94870 0.90505 0.93574 0.87467 0.90836 0.94547 0.92979 0.74634 0.83216 0.82537 0.89172 0.89575 0.91099 0.94665 0.95681 0.90474 0.91318 0.90245 0.90842 0.95516 0.83651 0.86460 0.79673 0.94318 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.95 9.49 71.98 0.68 -4.27 16 2 C 0.16 6.09 2.89 44.99 0.13 6.22 16 3 H 0.04 1.64 8.08 -2.39 -0.02 1.62 16 4 C -0.12 -3.30 4.87 30.59 0.15 -3.15 16 5 C 0.13 4.54 5.56 86.38 0.48 5.02 16 6 N -0.71 -19.60 5.51 -465.96 -2.57 -22.17 16 7 C 0.54 17.89 7.77 86.79 0.67 18.57 16 8 O -0.59 -25.69 16.35 -3.88 -0.06 -25.76 16 9 C -0.15 -3.85 5.87 -20.09 -0.12 -3.96 16 10 C -0.08 -1.31 9.54 22.53 0.21 -1.10 16 11 C -0.12 -1.54 9.68 22.23 0.22 -1.33 16 12 C -0.05 -0.73 5.14 -19.80 -0.10 -0.83 16 13 C -0.07 -0.69 5.26 29.85 0.16 -0.53 16 14 C 0.06 0.68 4.94 86.30 0.43 1.10 16 15 N -0.56 -6.21 5.02 -948.85 -4.76 -10.97 16 16 C 0.02 0.21 9.57 127.69 1.22 1.44 16 17 C 0.02 0.14 9.32 127.69 1.19 1.33 16 18 C -0.12 -2.11 9.68 22.23 0.22 -1.89 16 19 C -0.08 -1.85 9.60 22.53 0.22 -1.63 16 20 N -0.73 -36.75 4.57 -322.94 -1.48 -38.23 16 21 C -0.23 -13.15 9.93 84.03 0.83 -12.32 16 22 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.71 5.50 84.86 0.47 -4.25 16 24 N -0.97 -61.12 13.06 21.65 0.28 -60.83 16 25 Si 0.97 47.86 29.55 68.60 2.03 49.88 16 26 H -0.29 -13.74 7.11 99.48 0.71 -13.03 16 27 H -0.30 -15.08 7.11 99.48 0.71 -14.37 16 28 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 29 H 0.03 1.20 8.14 -2.39 -0.02 1.18 16 30 H 0.08 1.88 8.14 -2.39 -0.02 1.87 16 31 H 0.05 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 2.19 8.14 -2.38 -0.02 2.18 16 33 H 0.07 2.04 8.14 -2.39 -0.02 2.03 16 34 H 0.04 1.62 7.75 -2.39 -0.02 1.61 16 35 H 0.05 1.91 8.14 -2.39 -0.02 1.89 16 36 H 0.42 7.81 6.51 -92.71 -0.60 7.20 16 37 H 0.15 1.67 6.41 -2.91 -0.02 1.65 16 38 H 0.16 1.08 8.06 -2.91 -0.02 1.05 16 39 H 0.09 0.64 6.49 -2.39 -0.02 0.62 16 40 H 0.09 0.85 8.08 -2.39 -0.02 0.83 16 41 H 0.07 0.89 8.06 -2.39 -0.02 0.87 16 42 H 0.04 0.41 8.12 -2.39 -0.02 0.39 16 43 H 0.02 0.25 8.14 -2.39 -0.02 0.23 16 44 H 0.08 0.61 8.12 -2.39 -0.02 0.59 16 45 H 0.07 0.67 8.12 -2.39 -0.02 0.65 16 46 H 0.08 0.51 6.47 -2.39 -0.02 0.49 16 47 H 0.07 0.51 8.12 -2.39 -0.02 0.49 16 48 H 0.03 0.21 8.14 -2.39 -0.02 0.20 16 49 H 0.15 1.92 8.06 -2.91 -0.02 1.89 16 50 H 0.12 3.17 7.65 -2.91 -0.02 3.15 16 51 H 0.37 20.11 7.80 -92.71 -0.72 19.39 16 52 H 0.25 15.26 8.31 -92.70 -0.77 14.49 16 Total: -1.00 -77.19 423.17 0.07 -77.12 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: -0.43 Total: 32.54 kcal Atomic # 6 Polarization: -8.63 SS G_CDS: 7.06 Total: -1.58 kcal Atomic # 7 Polarization: -123.68 SS G_CDS: -8.52 Total: -132.20 kcal Atomic # 8 Polarization: -25.69 SS G_CDS: -0.06 Total: -25.76 kcal Atomic # 14 Polarization: 47.86 SS G_CDS: 2.03 Total: 49.88 kcal Total: -77.19 0.07 -77.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480792667.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 46.131 kcal (2) G-P(sol) polarization free energy of solvation -77.188 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.057 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.070 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.117 kcal (6) G-S(sol) free energy of system = (1) + (5) -30.987 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds