Wall clock time and date at job start Tue Mar 31 2020 18:27:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47250 * 2 1 4 4 C 1.36933 * 120.00263 * 275.30965 * 3 2 1 5 5 H 1.07996 * 119.99941 * 37.57654 * 4 3 2 6 6 C 1.38814 * 120.00164 * 217.57853 * 4 3 2 7 7 N 1.31625 * 119.99699 * 21.43025 * 6 4 3 8 8 Si 1.86793 * 120.00213 * 201.43061 * 6 4 3 9 9 H 1.48503 * 109.47115 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47081 * 119.99698 * 8 6 4 11 11 H 1.48494 * 109.47373 * 240.00046 * 8 6 4 12 12 C 1.46508 * 119.99873 * 95.31223 * 3 2 1 13 13 C 1.53003 * 109.46772 * 269.99929 * 12 3 2 14 14 N 1.46498 * 109.46755 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99503 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00289 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99698 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47442 * 180.02562 * 17 15 14 19 19 C 1.50692 * 109.47425 * 180.02562 * 18 17 15 20 20 C 1.38289 * 119.92260 * 269.72081 * 19 18 17 21 21 C 1.38114 * 120.07294 * 179.72348 * 20 19 18 22 22 C 1.38915 * 119.91998 * 0.55524 * 21 20 19 23 23 N 1.39671 * 120.07241 * 179.70513 * 22 21 20 24 24 C 1.46494 * 120.00341 * 180.02562 * 23 22 21 25 25 C 1.46503 * 119.99864 * 0.02562 * 23 22 21 26 26 C 1.38906 * 119.85408 * 359.72188 * 22 21 20 27 27 C 1.38109 * 119.92642 * 0.02562 * 26 22 21 28 28 H 1.08998 * 109.46897 * 300.00245 * 1 2 3 29 29 H 1.09005 * 109.46562 * 59.99827 * 1 2 3 30 30 H 1.08998 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47424 * 240.00281 * 2 1 3 32 32 H 1.09001 * 109.47225 * 119.99898 * 2 1 3 33 33 H 0.97001 * 119.99278 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47088 * 149.99566 * 12 3 2 35 35 H 1.09004 * 109.46987 * 29.99572 * 12 3 2 36 36 H 1.09002 * 109.47329 * 60.00190 * 13 12 3 37 37 H 1.08995 * 109.47085 * 299.99895 * 13 12 3 38 38 H 0.96999 * 120.00586 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47460 * 59.99668 * 17 15 14 40 40 H 1.09004 * 109.46956 * 299.99808 * 17 15 14 41 41 H 1.09003 * 109.46832 * 59.99629 * 18 17 15 42 42 H 1.09000 * 109.46563 * 300.00517 * 18 17 15 43 43 H 1.08000 * 119.96489 * 359.97438 * 20 19 18 44 44 H 1.07991 * 120.03788 * 180.28142 * 21 20 19 45 45 H 1.08996 * 109.47421 * 89.99720 * 24 23 22 46 46 H 1.09005 * 109.47665 * 209.99940 * 24 23 22 47 47 H 1.09002 * 109.47095 * 329.99530 * 24 23 22 48 48 H 1.09005 * 109.46886 * 90.00440 * 25 23 22 49 49 H 1.09002 * 109.47320 * 210.00209 * 25 23 22 50 50 H 1.08993 * 109.47452 * 330.00195 * 25 23 22 51 51 H 1.08002 * 120.04044 * 180.02562 * 26 22 21 52 52 H 1.07998 * 119.96436 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0634 -1.1808 5 1 1.4106 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3728 7 7 4.3028 2.7979 -0.6490 8 14 3.0995 4.2796 -2.6582 9 1 1.7773 4.2143 -3.3311 10 1 3.2551 5.6023 -2.0013 11 1 4.1767 4.0964 -3.6637 12 6 2.3733 2.0327 1.2634 13 6 1.1426 2.7382 1.8366 14 7 1.4977 3.3902 3.0996 15 6 0.5653 4.0778 3.7884 16 8 -0.5677 4.1564 3.3629 17 6 0.9304 4.7479 5.0879 18 6 -0.3002 5.4536 5.6612 19 6 0.0650 6.1243 6.9603 20 6 -0.0668 5.4363 8.1526 21 6 0.2725 6.0460 9.3446 22 6 0.7355 7.3557 9.3457 23 7 1.0736 7.9775 10.5499 24 6 1.5613 9.3588 10.5494 25 6 0.9406 7.2481 11.8134 26 6 0.8613 8.0457 8.1467 27 6 0.5252 7.4283 6.9579 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0490 3.4031 -0.7829 34 1 3.1618 2.7640 1.0860 35 1 2.7255 1.2832 1.9722 36 1 0.3541 2.0068 2.0140 37 1 0.7904 3.4876 1.1278 38 1 2.4037 3.3270 3.4401 39 1 1.7192 5.4789 4.9107 40 1 1.2821 3.9984 5.7969 41 1 -1.0887 4.7222 5.8384 42 1 -0.6524 6.2029 4.9522 43 1 -0.4315 4.4198 8.1514 44 1 0.1736 5.5067 10.2750 45 1 0.7174 10.0421 10.6442 46 1 2.2424 9.5041 11.3879 47 1 2.0871 9.5582 9.6156 48 1 1.8726 6.7266 12.0318 49 1 0.7205 7.9508 12.6172 50 1 0.1298 6.5243 11.7316 51 1 1.2214 9.0639 8.1441 52 1 0.6224 7.9643 6.0254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001480986889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:27 Heat of formation + Delta-G solvation = 5.929740 kcal Electronic energy + Delta-G solvation = -27662.635792 eV Core-core repulsion = 23855.416859 eV Total energy + Delta-G solvation = -3807.218934 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 2.03 seconds Orbital eigenvalues (eV) -39.96455 -39.17269 -36.87602 -36.26207 -34.00100 -33.27004 -31.87219 -31.33503 -29.99057 -29.12061 -28.50292 -27.46981 -25.54735 -24.20438 -23.10877 -22.51619 -21.59479 -20.46085 -20.32596 -19.72787 -17.66169 -16.98098 -16.32941 -16.21225 -15.43500 -15.37697 -15.32250 -15.13585 -14.88561 -14.25430 -14.21187 -13.89074 -13.74480 -13.70068 -13.30231 -13.11067 -13.02360 -12.82393 -12.42919 -12.37608 -12.37309 -12.33404 -11.96356 -11.91511 -11.49154 -11.26020 -11.18021 -11.10870 -10.77496 -10.74081 -10.61109 -10.47385 -10.06531 -9.92426 -9.83508 -9.79735 -9.36177 -9.04355 -8.54252 -8.39328 -7.44933 -6.61187 -5.82532 -3.41166 1.31948 1.43624 2.81497 3.06776 3.34562 3.43795 3.47783 3.61176 3.81566 4.47559 4.58435 4.60196 4.80925 4.83583 4.87721 4.96285 5.13680 5.15983 5.18208 5.26372 5.26622 5.29434 5.33916 5.43392 5.45811 5.55276 5.59721 5.72633 5.85944 5.93806 6.02030 6.14631 6.15936 6.20242 6.22033 6.31529 6.40373 6.45684 6.53866 6.68440 6.70995 6.71424 6.92782 6.95187 6.96275 7.06829 7.18552 7.24595 7.56921 7.81593 8.02142 8.49205 8.69069 9.15853 9.77797 10.35922 11.17372 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.001901 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.241308 B =14726.070492 C =15597.226646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.141 3.859 3 N -0.580 5.580 4 C -0.259 4.259 5 H 0.062 0.938 6 C 0.012 3.988 7 N -0.888 5.888 8 Si 0.896 3.104 9 H -0.275 1.275 10 H -0.287 1.287 11 H -0.289 1.289 12 C 0.137 3.863 13 C 0.097 3.903 14 N -0.723 5.723 15 C 0.504 3.496 16 O -0.551 6.551 17 C -0.135 4.135 18 C -0.057 4.057 19 C -0.135 4.135 20 C -0.068 4.068 21 C -0.196 4.196 22 C 0.206 3.794 23 N -0.642 5.642 24 C 0.094 3.906 25 C 0.095 3.905 26 C -0.195 4.195 27 C -0.067 4.067 28 H 0.044 0.956 29 H 0.050 0.950 30 H 0.036 0.964 31 H 0.046 0.954 32 H 0.034 0.966 33 H 0.254 0.746 34 H 0.098 0.902 35 H 0.028 0.972 36 H 0.050 0.950 37 H 0.062 0.938 38 H 0.397 0.603 39 H 0.091 0.909 40 H 0.090 0.910 41 H 0.075 0.925 42 H 0.076 0.924 43 H 0.121 0.879 44 H 0.120 0.880 45 H 0.046 0.954 46 H 0.064 0.936 47 H 0.069 0.931 48 H 0.046 0.954 49 H 0.064 0.936 50 H 0.068 0.932 51 H 0.120 0.880 52 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.202 8.945 24.715 26.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.015 3.985 3 N -0.301 5.301 4 C -0.388 4.388 5 H 0.079 0.921 6 C -0.188 4.188 7 N -0.530 5.530 8 Si 0.725 3.275 9 H -0.200 1.200 10 H -0.214 1.214 11 H -0.216 1.216 12 C 0.010 3.990 13 C -0.028 4.028 14 N -0.373 5.373 15 C 0.290 3.710 16 O -0.429 6.429 17 C -0.175 4.175 18 C -0.094 4.094 19 C -0.137 4.137 20 C -0.086 4.086 21 C -0.218 4.218 22 C 0.105 3.895 23 N -0.355 5.355 24 C -0.049 4.049 25 C -0.049 4.049 26 C -0.218 4.218 27 C -0.086 4.086 28 H 0.063 0.937 29 H 0.069 0.931 30 H 0.055 0.945 31 H 0.064 0.936 32 H 0.052 0.948 33 H 0.064 0.936 34 H 0.116 0.884 35 H 0.046 0.954 36 H 0.069 0.931 37 H 0.081 0.919 38 H 0.230 0.770 39 H 0.109 0.891 40 H 0.108 0.892 41 H 0.094 0.906 42 H 0.094 0.906 43 H 0.139 0.861 44 H 0.138 0.862 45 H 0.064 0.936 46 H 0.083 0.917 47 H 0.087 0.913 48 H 0.065 0.935 49 H 0.082 0.918 50 H 0.087 0.913 51 H 0.138 0.862 52 H 0.139 0.861 Dipole moment (debyes) X Y Z Total from point charges -4.791 9.137 24.526 26.607 hybrid contribution 0.482 0.804 -0.368 1.007 sum -4.308 9.941 24.158 26.476 Atomic orbital electron populations 1.22389 0.99917 0.99051 1.01414 1.20878 0.91774 0.87010 0.98857 1.43623 1.76048 1.08299 1.02124 1.19059 1.04684 1.21128 0.93960 0.92065 1.25191 0.94184 1.01279 0.98174 1.70010 1.03184 1.37262 1.42539 0.86333 0.77755 0.82183 0.81182 1.19976 1.21396 1.21608 1.21059 0.94642 0.96925 0.86373 1.22416 1.00906 0.96497 0.82987 1.46178 1.13197 1.53339 1.24616 1.20683 0.85404 0.78877 0.86009 1.90674 1.20679 1.61330 1.70258 1.21678 1.00088 1.00756 0.94968 1.20201 0.96583 0.99583 0.93081 1.19714 1.04175 0.94818 0.94951 1.20826 0.97259 0.99162 0.91394 1.20645 1.08241 0.94316 0.98611 1.17825 0.94064 0.91930 0.85656 1.46275 1.71989 1.13377 1.03838 1.21604 0.98645 0.82009 1.02635 1.21603 1.01271 0.96928 0.85071 1.20654 1.09128 1.00721 0.91265 1.20845 0.96250 0.94203 0.97295 0.93654 0.93120 0.94475 0.93607 0.94755 0.93603 0.88434 0.95378 0.93131 0.91920 0.76989 0.89106 0.89199 0.90616 0.90573 0.86109 0.86237 0.93553 0.91725 0.91262 0.93505 0.91755 0.91314 0.86212 0.86055 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -3.17 10.21 37.16 0.38 -2.79 16 2 C 0.14 2.98 6.44 -4.04 -0.03 2.96 16 3 N -0.58 -14.22 2.43 -173.23 -0.42 -14.64 16 4 C -0.26 -7.00 9.45 -15.06 -0.14 -7.14 16 5 H 0.06 1.68 7.92 -52.49 -0.42 1.26 16 6 C 0.01 0.32 4.95 -17.43 -0.09 0.24 16 7 N -0.89 -24.87 11.47 55.49 0.64 -24.23 16 8 Si 0.90 21.54 29.60 -169.99 -5.03 16.51 16 9 H -0.27 -6.56 7.11 56.52 0.40 -6.16 16 10 H -0.29 -6.95 7.11 56.52 0.40 -6.55 16 11 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 12 C 0.14 3.08 5.45 -4.04 -0.02 3.06 16 13 C 0.10 2.01 6.00 -4.04 -0.02 1.98 16 14 N -0.72 -12.20 5.56 -60.29 -0.33 -12.53 16 15 C 0.50 8.38 7.83 -10.98 -0.09 8.29 16 16 O -0.55 -11.34 15.98 5.56 0.09 -11.26 16 17 C -0.13 -1.62 5.68 -27.88 -0.16 -1.78 16 18 C -0.06 -0.68 4.63 -27.89 -0.13 -0.81 16 19 C -0.13 -1.47 5.14 -104.59 -0.54 -2.01 16 20 C -0.07 -0.69 9.69 -39.61 -0.38 -1.07 16 21 C -0.20 -1.89 9.21 -39.38 -0.36 -2.25 16 22 C 0.21 2.02 6.55 -83.79 -0.55 1.47 16 23 N -0.64 -5.07 3.41 -187.55 -0.64 -5.71 16 24 C 0.09 0.54 10.19 59.84 0.61 1.15 16 25 C 0.09 0.53 10.19 59.85 0.61 1.14 16 26 C -0.20 -1.93 9.21 -39.38 -0.36 -2.29 16 27 C -0.07 -0.70 9.69 -39.61 -0.38 -1.09 16 28 H 0.04 0.86 6.64 -51.93 -0.34 0.52 16 29 H 0.05 1.00 8.14 -51.93 -0.42 0.58 16 30 H 0.04 0.59 8.14 -51.93 -0.42 0.17 16 31 H 0.05 0.99 8.08 -51.93 -0.42 0.57 16 32 H 0.03 0.67 7.83 -51.93 -0.41 0.27 16 33 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 34 H 0.10 2.45 5.52 -51.93 -0.29 2.17 16 35 H 0.03 0.59 7.86 -51.93 -0.41 0.18 16 36 H 0.05 1.07 6.64 -51.93 -0.34 0.72 16 37 H 0.06 1.48 8.14 -51.93 -0.42 1.06 16 38 H 0.40 5.65 8.47 -40.82 -0.35 5.31 16 39 H 0.09 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.09 0.92 8.14 -51.93 -0.42 0.50 16 41 H 0.08 0.95 8.04 -51.93 -0.42 0.53 16 42 H 0.08 0.98 8.04 -51.93 -0.42 0.57 16 43 H 0.12 1.07 8.06 -52.49 -0.42 0.64 16 44 H 0.12 0.94 6.14 -52.49 -0.32 0.62 16 45 H 0.05 0.25 8.14 -51.93 -0.42 -0.18 16 46 H 0.06 0.27 8.07 -51.93 -0.42 -0.15 16 47 H 0.07 0.39 6.20 -51.93 -0.32 0.07 16 48 H 0.05 0.25 8.14 -51.93 -0.42 -0.17 16 49 H 0.06 0.26 8.07 -51.93 -0.42 -0.16 16 50 H 0.07 0.37 6.20 -51.93 -0.32 0.05 16 51 H 0.12 0.98 6.14 -52.49 -0.32 0.66 16 52 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 417.56 15.07 6.29 6.29 Total: -1.00 -32.22 417.56 -9.94 -42.16 By element: Atomic # 1 Polarization: 13.20 SS G_CDS: -8.87 Total: 4.32 kcal Atomic # 6 Polarization: 0.73 SS G_CDS: -1.65 Total: -0.92 kcal Atomic # 7 Polarization: -56.35 SS G_CDS: -0.76 Total: -57.11 kcal Atomic # 8 Polarization: -11.34 SS G_CDS: 0.09 Total: -11.26 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -5.03 Total: 16.51 kcal Total LS contribution 6.29 Total: 6.29 kcal Total: -32.22 -9.94 -42.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480986889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.090 kcal (2) G-P(sol) polarization free energy of solvation -32.222 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.868 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.938 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.160 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.930 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.03 seconds