Wall clock time and date at job start Tue Mar 31 2020 18:27:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46502 * 109.47250 * 2 1 4 4 C 1.36933 * 120.00263 * 275.30965 * 3 2 1 5 5 H 1.07996 * 119.99941 * 37.57654 * 4 3 2 6 6 C 1.38814 * 120.00164 * 217.57853 * 4 3 2 7 7 N 1.31625 * 119.99699 * 21.43025 * 6 4 3 8 8 Si 1.86793 * 120.00213 * 201.43061 * 6 4 3 9 9 H 1.48503 * 109.47115 * 0.02562 * 8 6 4 10 10 H 1.48499 * 109.47081 * 119.99698 * 8 6 4 11 11 H 1.48494 * 109.47373 * 240.00046 * 8 6 4 12 12 C 1.46508 * 119.99873 * 95.31223 * 3 2 1 13 13 C 1.53003 * 109.46772 * 269.99929 * 12 3 2 14 14 N 1.46498 * 109.46755 * 180.02562 * 13 12 3 15 15 C 1.34781 * 119.99503 * 179.97438 * 14 13 12 16 16 O 1.21279 * 120.00289 * 0.02562 * 15 14 13 17 17 C 1.50701 * 119.99698 * 179.97438 * 15 14 13 18 18 C 1.52998 * 109.47442 * 180.02562 * 17 15 14 19 19 C 1.50692 * 109.47425 * 180.02562 * 18 17 15 20 20 C 1.38289 * 119.92260 * 269.72081 * 19 18 17 21 21 C 1.38114 * 120.07294 * 179.72348 * 20 19 18 22 22 C 1.38915 * 119.91998 * 0.55524 * 21 20 19 23 23 N 1.39671 * 120.07241 * 179.70513 * 22 21 20 24 24 C 1.46494 * 120.00341 * 180.02562 * 23 22 21 25 25 C 1.46503 * 119.99864 * 0.02562 * 23 22 21 26 26 C 1.38906 * 119.85408 * 359.72188 * 22 21 20 27 27 C 1.38109 * 119.92642 * 0.02562 * 26 22 21 28 28 H 1.08998 * 109.46897 * 300.00245 * 1 2 3 29 29 H 1.09005 * 109.46562 * 59.99827 * 1 2 3 30 30 H 1.08998 * 109.47341 * 179.97438 * 1 2 3 31 31 H 1.09002 * 109.47424 * 240.00281 * 2 1 3 32 32 H 1.09001 * 109.47225 * 119.99898 * 2 1 3 33 33 H 0.97001 * 119.99278 * 180.02562 * 7 6 4 34 34 H 1.08994 * 109.47088 * 149.99566 * 12 3 2 35 35 H 1.09004 * 109.46987 * 29.99572 * 12 3 2 36 36 H 1.09002 * 109.47329 * 60.00190 * 13 12 3 37 37 H 1.08995 * 109.47085 * 299.99895 * 13 12 3 38 38 H 0.96999 * 120.00586 * 359.97438 * 14 13 12 39 39 H 1.08996 * 109.47460 * 59.99668 * 17 15 14 40 40 H 1.09004 * 109.46956 * 299.99808 * 17 15 14 41 41 H 1.09003 * 109.46832 * 59.99629 * 18 17 15 42 42 H 1.09000 * 109.46563 * 300.00517 * 18 17 15 43 43 H 1.08000 * 119.96489 * 359.97438 * 20 19 18 44 44 H 1.07991 * 120.03788 * 180.28142 * 21 20 19 45 45 H 1.08996 * 109.47421 * 89.99720 * 24 23 22 46 46 H 1.09005 * 109.47665 * 209.99940 * 24 23 22 47 47 H 1.09002 * 109.47095 * 329.99530 * 24 23 22 48 48 H 1.09005 * 109.46886 * 90.00440 * 25 23 22 49 49 H 1.09002 * 109.47320 * 210.00209 * 25 23 22 50 50 H 1.08993 * 109.47452 * 330.00195 * 25 23 22 51 51 H 1.08002 * 120.04044 * 180.02562 * 26 22 21 52 52 H 1.07998 * 119.96436 * 179.97438 * 27 26 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.1432 2.0634 -1.1808 5 1 1.4106 1.9279 -1.9626 6 6 3.2112 2.9290 -1.3728 7 7 4.3028 2.7979 -0.6490 8 14 3.0995 4.2796 -2.6582 9 1 1.7773 4.2143 -3.3311 10 1 3.2551 5.6023 -2.0013 11 1 4.1767 4.0964 -3.6637 12 6 2.3733 2.0327 1.2634 13 6 1.1426 2.7382 1.8366 14 7 1.4977 3.3902 3.0996 15 6 0.5653 4.0778 3.7884 16 8 -0.5677 4.1564 3.3629 17 6 0.9304 4.7479 5.0879 18 6 -0.3002 5.4536 5.6612 19 6 0.0650 6.1243 6.9603 20 6 -0.0668 5.4363 8.1526 21 6 0.2725 6.0460 9.3446 22 6 0.7355 7.3557 9.3457 23 7 1.0736 7.9775 10.5499 24 6 1.5613 9.3588 10.5494 25 6 0.9406 7.2481 11.8134 26 6 0.8613 8.0457 8.1467 27 6 0.5252 7.4283 6.9579 28 1 -0.3633 0.5139 0.8900 29 1 -0.3633 0.5139 -0.8900 30 1 -0.3634 -1.0276 -0.0005 31 1 1.8934 -0.5138 -0.8900 32 1 1.8933 -0.5138 0.8900 33 1 5.0490 3.4031 -0.7829 34 1 3.1618 2.7640 1.0860 35 1 2.7255 1.2832 1.9722 36 1 0.3541 2.0068 2.0140 37 1 0.7904 3.4876 1.1278 38 1 2.4037 3.3270 3.4401 39 1 1.7192 5.4789 4.9107 40 1 1.2821 3.9984 5.7969 41 1 -1.0887 4.7222 5.8384 42 1 -0.6524 6.2029 4.9522 43 1 -0.4315 4.4198 8.1514 44 1 0.1736 5.5067 10.2750 45 1 0.7174 10.0421 10.6442 46 1 2.2424 9.5041 11.3879 47 1 2.0871 9.5582 9.6156 48 1 1.8726 6.7266 12.0318 49 1 0.7205 7.9508 12.6172 50 1 0.1298 6.5243 11.7316 51 1 1.2214 9.0639 8.1441 52 1 0.6224 7.9643 6.0254 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001480986889.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:27:25 Heat of formation + Delta-G solvation = -11.822524 kcal Electronic energy + Delta-G solvation = -27663.405588 eV Core-core repulsion = 23855.416859 eV Total energy + Delta-G solvation = -3807.988730 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.77 seconds Orbital eigenvalues (eV) -40.87334 -40.36250 -38.13139 -37.48453 -35.57188 -34.19417 -33.83027 -32.02490 -31.46411 -30.28566 -29.06677 -28.97630 -26.60587 -25.84387 -24.10106 -23.22308 -23.09576 -22.13651 -21.36688 -20.96883 -18.74195 -18.29263 -17.79228 -17.11487 -16.95418 -16.73692 -16.41820 -15.92515 -15.90314 -15.79129 -15.44988 -15.10598 -14.99509 -14.58022 -14.42349 -14.36183 -14.12173 -13.86974 -13.71215 -13.53960 -13.41168 -13.22682 -13.02193 -12.90119 -12.82928 -12.74947 -12.65078 -12.35629 -12.29406 -12.11523 -12.04729 -12.01858 -11.66462 -11.52216 -11.49964 -10.89171 -10.55324 -10.50438 -9.97168 -9.78195 -8.59881 -8.09723 -7.86076 -5.48904 0.58409 0.67800 1.42080 1.46819 1.56174 1.72450 2.28352 2.30494 2.51398 2.98569 3.21476 3.70193 3.87951 3.92868 4.09014 4.17153 4.20462 4.26719 4.32165 4.37285 4.46271 4.48122 4.49053 4.54481 4.62401 4.65262 4.70763 4.80060 4.80992 4.83262 4.84939 4.88062 4.90771 4.92319 5.05775 5.08620 5.22853 5.24139 5.26441 5.28897 5.42472 5.49050 5.56371 5.56937 5.66982 5.75991 5.89973 6.00011 6.39522 6.45094 6.59545 6.67888 7.14645 7.35248 7.82879 8.35025 9.09707 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017140 B = 0.001901 C = 0.001795 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1633.241308 B =14726.070492 C =15597.226646 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.136 3.864 3 N -0.598 5.598 4 C -0.269 4.269 5 H 0.051 0.949 6 C -0.030 4.030 7 N -0.910 5.910 8 Si 0.951 3.049 9 H -0.274 1.274 10 H -0.289 1.289 11 H -0.286 1.286 12 C 0.145 3.855 13 C 0.119 3.881 14 N -0.717 5.717 15 C 0.503 3.497 16 O -0.594 6.594 17 C -0.121 4.121 18 C -0.049 4.049 19 C -0.148 4.148 20 C -0.072 4.072 21 C -0.204 4.204 22 C 0.199 3.801 23 N -0.647 5.647 24 C 0.089 3.911 25 C 0.089 3.911 26 C -0.206 4.206 27 C -0.076 4.076 28 H 0.040 0.960 29 H 0.033 0.967 30 H 0.069 0.931 31 H 0.037 0.963 32 H 0.052 0.948 33 H 0.254 0.746 34 H 0.073 0.927 35 H 0.045 0.955 36 H 0.046 0.954 37 H 0.026 0.974 38 H 0.412 0.588 39 H 0.108 0.892 40 H 0.116 0.884 41 H 0.066 0.934 42 H 0.060 0.940 43 H 0.131 0.869 44 H 0.135 0.865 45 H 0.050 0.950 46 H 0.081 0.919 47 H 0.068 0.932 48 H 0.051 0.949 49 H 0.081 0.919 50 H 0.070 0.930 51 H 0.132 0.868 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.926 9.204 26.780 28.589 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.011 3.989 3 N -0.319 5.319 4 C -0.399 4.399 5 H 0.069 0.931 6 C -0.228 4.228 7 N -0.554 5.554 8 Si 0.779 3.221 9 H -0.199 1.199 10 H -0.215 1.215 11 H -0.213 1.213 12 C 0.018 3.982 13 C -0.007 4.007 14 N -0.369 5.369 15 C 0.291 3.709 16 O -0.475 6.475 17 C -0.161 4.161 18 C -0.087 4.087 19 C -0.150 4.150 20 C -0.091 4.091 21 C -0.226 4.226 22 C 0.097 3.903 23 N -0.359 5.359 24 C -0.054 4.054 25 C -0.053 4.053 26 C -0.228 4.228 27 C -0.094 4.094 28 H 0.059 0.941 29 H 0.052 0.948 30 H 0.088 0.912 31 H 0.055 0.945 32 H 0.070 0.930 33 H 0.063 0.937 34 H 0.091 0.909 35 H 0.063 0.937 36 H 0.065 0.935 37 H 0.045 0.955 38 H 0.248 0.752 39 H 0.126 0.874 40 H 0.134 0.866 41 H 0.085 0.915 42 H 0.079 0.921 43 H 0.149 0.851 44 H 0.153 0.847 45 H 0.069 0.931 46 H 0.100 0.900 47 H 0.086 0.914 48 H 0.069 0.931 49 H 0.099 0.901 50 H 0.088 0.912 51 H 0.150 0.850 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -4.497 9.395 26.634 28.598 hybrid contribution 0.382 0.713 -0.919 1.224 sum -4.116 10.108 25.715 27.935 Atomic orbital electron populations 1.22215 0.98012 1.00850 1.00332 1.21017 0.93163 0.85461 0.99291 1.43866 1.76384 1.09664 1.02029 1.19184 1.04304 1.21709 0.94730 0.93121 1.25772 0.94042 1.02905 1.00110 1.70094 1.03557 1.37897 1.43837 0.85483 0.77606 0.79740 0.79262 1.19856 1.21524 1.21276 1.20930 0.94418 0.96738 0.86141 1.21876 0.99761 0.95266 0.83835 1.46051 1.14255 1.53164 1.23383 1.21498 0.84470 0.77955 0.86951 1.90656 1.22558 1.62715 1.71547 1.21672 1.00565 1.01313 0.92516 1.20074 0.96240 0.98946 0.93454 1.19603 1.05635 0.95201 0.94534 1.20988 0.97051 0.99711 0.91325 1.20854 1.08140 0.94531 0.99083 1.18043 0.93628 0.92177 0.86450 1.46554 1.71344 1.14138 1.03870 1.21744 0.99150 0.81103 1.03375 1.21754 1.01587 0.97399 0.84608 1.20832 1.09345 1.01423 0.91203 1.20974 0.96347 0.94220 0.97886 0.94096 0.94761 0.91188 0.94456 0.92961 0.93694 0.90891 0.93694 0.93549 0.95541 0.75203 0.87388 0.86620 0.91540 0.92146 0.85076 0.84704 0.93117 0.90014 0.91355 0.93059 0.90062 0.91180 0.85004 0.85642 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.65 10.21 71.98 0.73 -4.92 16 2 C 0.14 5.65 6.44 86.38 0.56 6.20 16 3 N -0.60 -29.41 2.43 -701.98 -1.71 -31.11 16 4 C -0.27 -14.74 9.45 84.03 0.79 -13.94 16 5 H 0.05 2.83 7.92 -2.91 -0.02 2.81 16 6 C -0.03 -1.66 4.95 84.86 0.42 -1.24 16 7 N -0.91 -51.36 11.47 21.65 0.25 -51.11 16 8 Si 0.95 44.74 29.60 68.60 2.03 46.77 16 9 H -0.27 -12.70 7.11 99.48 0.71 -11.99 16 10 H -0.29 -13.54 7.11 99.48 0.71 -12.84 16 11 H -0.29 -13.24 7.11 99.48 0.71 -12.53 16 12 C 0.14 6.50 5.45 86.38 0.47 6.97 16 13 C 0.12 4.96 6.00 86.38 0.52 5.48 16 14 N -0.72 -23.77 5.56 -463.06 -2.57 -26.35 16 15 C 0.50 16.46 7.83 87.66 0.69 17.15 16 16 O -0.59 -24.76 15.98 -3.03 -0.05 -24.81 16 17 C -0.12 -2.73 5.68 29.85 0.17 -2.56 16 18 C -0.05 -1.16 4.63 29.84 0.14 -1.02 16 19 C -0.15 -3.09 5.14 -19.84 -0.10 -3.19 16 20 C -0.07 -1.37 9.69 22.25 0.22 -1.15 16 21 C -0.20 -3.60 9.21 22.40 0.21 -3.39 16 22 C 0.20 3.59 6.55 38.21 0.25 3.84 16 23 N -0.65 -8.92 3.41 -747.29 -2.55 -11.47 16 24 C 0.09 0.85 10.19 127.77 1.30 2.15 16 25 C 0.09 0.80 10.19 127.77 1.30 2.10 16 26 C -0.21 -3.81 9.21 22.40 0.21 -3.60 16 27 C -0.08 -1.52 9.69 22.25 0.22 -1.30 16 28 H 0.04 1.51 6.64 -2.39 -0.02 1.50 16 29 H 0.03 1.34 8.14 -2.38 -0.02 1.32 16 30 H 0.07 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.04 1.59 8.08 -2.39 -0.02 1.57 16 32 H 0.05 1.97 7.83 -2.39 -0.02 1.95 16 33 H 0.25 13.76 8.31 -92.71 -0.77 12.99 16 34 H 0.07 3.70 5.52 -2.39 -0.01 3.69 16 35 H 0.04 1.84 7.86 -2.39 -0.02 1.82 16 36 H 0.05 1.97 6.64 -2.39 -0.02 1.95 16 37 H 0.03 1.28 8.14 -2.39 -0.02 1.26 16 38 H 0.41 11.19 8.47 -92.71 -0.79 10.40 16 39 H 0.11 2.13 8.14 -2.39 -0.02 2.11 16 40 H 0.12 2.07 8.14 -2.39 -0.02 2.05 16 41 H 0.07 1.66 8.04 -2.39 -0.02 1.64 16 42 H 0.06 1.59 8.04 -2.39 -0.02 1.57 16 43 H 0.13 2.11 8.06 -2.91 -0.02 2.09 16 44 H 0.14 1.86 6.14 -2.92 -0.02 1.84 16 45 H 0.05 0.44 8.14 -2.39 -0.02 0.43 16 46 H 0.08 0.49 8.07 -2.38 -0.02 0.47 16 47 H 0.07 0.66 6.20 -2.39 -0.01 0.64 16 48 H 0.05 0.43 8.14 -2.38 -0.02 0.41 16 49 H 0.08 0.46 8.07 -2.39 -0.02 0.44 16 50 H 0.07 0.61 6.20 -2.39 -0.01 0.59 16 51 H 0.13 2.00 6.14 -2.91 -0.02 1.98 16 52 H 0.13 2.30 8.06 -2.91 -0.02 2.27 16 Total: -1.00 -69.61 417.56 3.60 -66.01 By element: Atomic # 1 Polarization: 24.38 SS G_CDS: 0.11 Total: 24.50 kcal Atomic # 6 Polarization: -0.51 SS G_CDS: 8.08 Total: 7.58 kcal Atomic # 7 Polarization: -113.46 SS G_CDS: -6.58 Total: -120.04 kcal Atomic # 8 Polarization: -24.76 SS G_CDS: -0.05 Total: -24.81 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -69.61 3.60 -66.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001480986889.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.188 kcal (2) G-P(sol) polarization free energy of solvation -69.612 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.424 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.601 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.77 seconds