Wall clock time and date at job start Tue Mar 31 2020 18:23:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 N 1.46896 * 109.47471 * 2 1 4 4 C 1.46901 * 111.00348 * 288.67000 * 3 2 1 5 5 C 1.46903 * 110.99829 * 164.71522 * 3 2 1 6 6 H 1.09000 * 109.47077 * 63.77032 * 5 3 2 7 7 C 1.50703 * 109.47221 * 183.76919 * 5 3 2 8 8 O 1.21282 * 119.99493 * 27.14364 * 7 5 3 9 9 N 1.34773 * 120.00036 * 207.14757 * 7 5 3 10 10 C 1.46508 * 119.99766 * 179.97438 * 9 7 5 11 11 C 1.52996 * 109.46969 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47289 * 305.00094 * 11 10 9 13 13 C 1.53004 * 109.47312 * 65.00116 * 11 10 9 14 14 C 1.53001 * 109.47188 * 184.99829 * 11 10 9 15 15 N 1.46497 * 109.47114 * 175.00086 * 14 11 10 16 16 C 1.36936 * 120.00082 * 180.02562 * 15 14 11 17 17 H 1.08001 * 119.99662 * 359.97438 * 16 15 14 18 18 C 1.38815 * 120.00172 * 180.02562 * 16 15 14 19 19 N 1.31612 * 119.99823 * 359.97438 * 18 16 15 20 20 Si 1.86797 * 119.99780 * 179.97438 * 18 16 15 21 21 H 1.48497 * 109.47444 * 60.00147 * 20 18 16 22 22 H 1.48506 * 109.46822 * 179.97438 * 20 18 16 23 23 H 1.48501 * 109.47417 * 299.99560 * 20 18 16 24 24 C 1.50689 * 109.47554 * 303.76998 * 5 3 2 25 25 C 1.38243 * 120.00393 * 133.25284 * 24 5 3 26 26 C 1.38233 * 120.00155 * 179.97438 * 25 24 5 27 27 C 1.38234 * 120.00008 * 359.96519 * 26 25 24 28 28 C 1.38237 * 120.00071 * 359.97438 * 27 26 25 29 29 C 1.38234 * 120.00034 * 0.07305 * 28 27 26 30 30 H 1.08998 * 109.47700 * 179.97438 * 1 2 3 31 31 H 1.09006 * 109.46865 * 299.99820 * 1 2 3 32 32 H 1.09005 * 109.47426 * 59.99378 * 1 2 3 33 33 H 1.09006 * 109.46865 * 240.00180 * 2 1 3 34 34 H 1.08996 * 109.47238 * 120.00507 * 2 1 3 35 35 H 1.08998 * 109.47273 * 296.04531 * 4 3 2 36 36 H 1.08998 * 109.46654 * 56.04589 * 4 3 2 37 37 H 1.08993 * 109.46828 * 176.04304 * 4 3 2 38 38 H 0.96997 * 120.00586 * 359.97438 * 9 7 5 39 39 H 1.08993 * 109.46943 * 300.00004 * 10 9 7 40 40 H 1.09001 * 109.46902 * 60.00142 * 10 9 7 41 41 H 1.09006 * 109.46790 * 300.00454 * 13 11 10 42 42 H 1.09007 * 109.46917 * 59.99694 * 13 11 10 43 43 H 1.08996 * 109.47675 * 180.02562 * 13 11 10 44 44 H 1.08995 * 109.47274 * 295.00408 * 14 11 10 45 45 H 1.08999 * 109.46809 * 55.00312 * 14 11 10 46 46 H 0.97001 * 120.00196 * 359.97438 * 15 14 11 47 47 H 0.97003 * 120.00041 * 179.97438 * 19 18 16 48 48 H 1.07998 * 119.99511 * 359.97438 * 25 24 5 49 49 H 1.08004 * 119.99684 * 179.97438 * 26 25 24 50 50 H 1.08006 * 119.99844 * 179.72354 * 27 26 25 51 51 H 1.07999 * 119.99807 * 179.97438 * 28 27 26 52 52 H 1.08004 * 119.99800 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0197 1.3849 0.0000 4 6 1.7813 2.0277 -1.2992 5 6 3.4424 1.4402 0.3615 6 1 4.0301 0.9207 -0.3954 7 6 3.8850 2.8785 0.4414 8 8 3.0816 3.7460 0.7112 9 7 5.1736 3.2008 0.2128 10 6 5.6036 4.5992 0.2898 11 6 7.1014 4.6893 -0.0090 12 1 7.6468 4.0290 0.6653 13 6 7.3591 4.2657 -1.4565 14 6 7.5761 6.1297 0.1930 15 7 9.0298 6.1931 0.0236 16 6 9.6835 7.3887 0.1595 17 1 9.1272 8.2849 0.3912 18 6 11.0610 7.4489 -0.0016 19 7 11.7387 6.3567 -0.2845 20 14 11.9524 9.0800 0.1831 21 1 11.7274 9.6152 1.5498 22 1 13.4072 8.8764 -0.0349 23 1 11.4317 10.0450 -0.8184 24 6 3.6471 0.7768 1.6990 25 6 4.6753 -0.1313 1.8702 26 6 4.8633 -0.7394 3.0972 27 6 4.0236 -0.4390 4.1534 28 6 2.9961 0.4699 3.9826 29 6 2.8075 1.0773 2.7553 30 1 -0.3634 -1.0276 -0.0005 31 1 -0.3633 0.5138 0.8901 32 1 -0.3634 0.5139 -0.8900 33 1 1.8932 -0.5138 -0.8901 34 1 1.8933 -0.5139 0.8899 35 1 2.3578 1.5152 -2.0694 36 1 0.7203 1.9726 -1.5425 37 1 2.0890 3.0721 -1.2497 38 1 5.8162 2.5069 -0.0027 39 1 5.0509 5.1900 -0.4404 40 1 5.4094 4.9844 1.2908 41 1 7.0209 3.2395 -1.6004 42 1 6.8137 4.9260 -2.1308 43 1 8.4262 4.3294 -1.6693 44 1 7.0961 6.7767 -0.5411 45 1 7.3125 6.4615 1.1973 46 1 9.5295 5.3881 -0.1842 47 1 12.7013 6.3988 -0.3975 48 1 5.3317 -0.3655 1.0451 49 1 5.6665 -1.4491 3.2307 50 1 4.1677 -0.9176 5.1108 51 1 2.3398 0.7042 4.8077 52 1 2.0045 1.7871 2.6218 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482160129.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:30 Heat of formation + Delta-G solvation = 2.315156 kcal Electronic energy + Delta-G solvation = -28903.518130 eV Core-core repulsion = 25096.142456 eV Total energy + Delta-G solvation = -3807.375674 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.69642 -38.98891 -37.53021 -36.59480 -34.34528 -32.88149 -32.20147 -31.10195 -30.74503 -30.03649 -27.64624 -26.54839 -25.70221 -24.65586 -22.85823 -22.54984 -22.13884 -21.14300 -20.38085 -19.65501 -17.55811 -17.19989 -16.82311 -16.55580 -16.00961 -15.63182 -15.17812 -14.94919 -14.81681 -14.67756 -14.24873 -14.18742 -13.63587 -13.59932 -13.56530 -13.23171 -13.04128 -13.00362 -12.67078 -12.52003 -12.40396 -12.24229 -12.09385 -12.04502 -11.75430 -11.36626 -11.25416 -11.07727 -11.05174 -10.89415 -10.69580 -10.57214 -10.42442 -10.11763 -9.92111 -9.66954 -9.13073 -9.01112 -8.90346 -8.86843 -8.63556 -6.92168 -5.76775 -3.05077 1.02403 1.20248 2.59003 2.95276 3.44845 3.46447 3.48968 3.50108 3.82616 4.36185 4.57584 4.59654 4.68173 4.73060 4.78901 4.84746 4.92984 4.99023 5.07051 5.17433 5.21790 5.22827 5.24808 5.31435 5.38541 5.40485 5.52957 5.58046 5.65220 5.68954 5.76764 5.81135 5.85343 5.94885 5.96144 6.00603 6.11073 6.20756 6.23999 6.31174 6.31647 6.38673 6.48577 6.63029 6.65478 6.73226 6.77236 6.77577 6.87017 7.49622 7.70353 8.21512 8.42436 9.53590 10.10932 10.45796 11.46202 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016318 B = 0.002282 C = 0.002119 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.485706 B =12269.480568 C =13208.226694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.018 3.982 5 C 0.111 3.889 6 H 0.065 0.935 7 C 0.520 3.480 8 O -0.519 6.519 9 N -0.724 5.724 10 C 0.129 3.871 11 C -0.110 4.110 12 H 0.076 0.924 13 C -0.141 4.141 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.085 4.085 25 C -0.111 4.111 26 C -0.122 4.122 27 C -0.115 4.115 28 C -0.125 4.125 29 C -0.080 4.080 30 H 0.057 0.943 31 H 0.064 0.936 32 H 0.054 0.946 33 H 0.033 0.967 34 H 0.079 0.921 35 H 0.024 0.976 36 H 0.074 0.926 37 H 0.078 0.922 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.053 0.947 43 H 0.070 0.930 44 H 0.022 0.978 45 H 0.021 0.979 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.122 0.878 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.134 0.866 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 -19.388 2.108 28.780 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.079 4.079 3 N -0.239 5.239 4 C -0.129 4.129 5 C -0.001 4.001 6 H 0.082 0.918 7 C 0.304 3.696 8 O -0.393 6.393 9 N -0.376 5.376 10 C 0.005 3.995 11 C -0.129 4.129 12 H 0.094 0.906 13 C -0.198 4.198 14 C 0.033 3.967 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.085 4.085 25 C -0.129 4.129 26 C -0.140 4.140 27 C -0.133 4.133 28 C -0.143 4.143 29 C -0.098 4.098 30 H 0.076 0.924 31 H 0.083 0.917 32 H 0.073 0.927 33 H 0.052 0.948 34 H 0.097 0.903 35 H 0.042 0.958 36 H 0.093 0.907 37 H 0.097 0.903 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.072 0.928 43 H 0.089 0.911 44 H 0.040 0.960 45 H 0.039 0.961 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.140 0.860 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.151 0.849 Dipole moment (debyes) X Y Z Total from point charges -21.981 -18.288 2.667 28.718 hybrid contribution 1.629 -0.164 -0.701 1.781 sum -20.352 -18.452 1.967 27.542 Atomic orbital electron populations 1.21752 0.94496 1.01366 1.02659 1.22164 0.96426 0.88193 1.01142 1.61754 1.13893 1.17361 1.30938 1.22522 1.02037 1.00426 0.87960 1.20461 0.90836 0.93577 0.95236 0.91754 1.20127 0.82329 0.89941 0.77165 1.90705 1.52385 1.49809 1.46423 1.46068 1.09584 1.10251 1.71675 1.21406 0.94967 0.81058 1.02061 1.21549 0.93436 0.99965 0.97981 0.90558 1.21786 1.03170 0.99322 0.95516 1.20569 0.86731 0.91589 0.97843 1.42328 1.00607 1.08914 1.85665 1.19195 0.90064 0.87506 1.40227 0.91212 1.24734 0.96415 0.97177 1.02720 1.69643 1.06914 1.26455 1.55366 0.86252 0.78720 0.83233 0.77895 1.21264 1.21709 1.21263 1.19328 0.97101 0.98036 0.94078 1.21038 0.97318 0.96592 0.97966 1.21087 0.99647 1.00315 0.92960 1.21219 0.95331 0.97877 0.98862 1.21213 0.98373 0.97290 0.97399 1.21132 0.98632 0.98336 0.91712 0.92357 0.91720 0.92674 0.94841 0.90258 0.95756 0.90685 0.90316 0.76737 0.91356 0.91375 0.94039 0.92827 0.91148 0.96013 0.96137 0.78222 0.93492 0.86033 0.85872 0.86097 0.85953 0.84851 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.03 9.95 37.15 0.37 -0.66 16 2 C 0.05 0.39 5.40 -3.83 -0.02 0.37 16 3 N -0.51 -5.16 3.85 -237.70 -0.92 -6.08 16 4 C 0.02 0.18 9.04 60.07 0.54 0.72 16 5 C 0.11 1.13 2.07 -70.02 -0.14 0.99 16 6 H 0.06 0.56 7.94 -51.93 -0.41 0.14 16 7 C 0.52 6.71 5.92 -10.99 -0.06 6.65 16 8 O -0.52 -8.51 15.49 5.56 0.09 -8.43 16 9 N -0.72 -8.65 5.28 -60.29 -0.32 -8.96 16 10 C 0.13 1.79 5.07 -4.04 -0.02 1.77 16 11 C -0.11 -1.70 2.46 -90.62 -0.22 -1.92 16 12 H 0.08 1.20 8.14 -51.93 -0.42 0.78 16 13 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 14 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 15 N -0.73 -18.35 5.33 -59.91 -0.32 -18.67 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.91 7.83 -52.49 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.94 -28.17 13.06 55.49 0.72 -27.45 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.49 16 21 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.98 7.11 56.52 0.40 -6.57 16 24 C -0.08 -0.85 3.29 -104.63 -0.34 -1.19 16 25 C -0.11 -0.97 9.67 -39.58 -0.38 -1.35 16 26 C -0.12 -1.02 10.05 -39.58 -0.40 -1.41 16 27 C -0.11 -0.96 10.05 -39.58 -0.40 -1.36 16 28 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 29 C -0.08 -0.84 8.67 -39.58 -0.34 -1.18 16 30 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 31 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 32 H 0.05 0.38 6.67 -51.93 -0.35 0.04 16 33 H 0.03 0.25 8.06 -51.93 -0.42 -0.17 16 34 H 0.08 0.68 6.15 -51.93 -0.32 0.36 16 35 H 0.02 0.21 8.14 -51.93 -0.42 -0.22 16 36 H 0.07 0.63 6.53 -51.93 -0.34 0.29 16 37 H 0.08 0.93 6.35 -51.93 -0.33 0.60 16 38 H 0.40 3.94 7.65 -40.82 -0.31 3.63 16 39 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 40 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 41 H 0.04 0.49 7.18 -51.93 -0.37 0.11 16 42 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 43 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 44 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 45 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 46 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.12 0.84 7.99 -52.49 -0.42 0.42 16 49 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 50 H 0.12 0.77 8.06 -52.48 -0.42 0.35 16 51 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 52 H 0.13 1.56 7.93 -52.48 -0.42 1.15 16 LS Contribution 415.70 15.07 6.26 6.26 Total: -1.00 -32.60 415.70 -10.22 -42.82 By element: Atomic # 1 Polarization: 18.01 SS G_CDS: -8.96 Total: 9.05 kcal Atomic # 6 Polarization: -4.28 SS G_CDS: -1.76 Total: -6.04 kcal Atomic # 7 Polarization: -60.33 SS G_CDS: -0.83 Total: -61.16 kcal Atomic # 8 Polarization: -8.51 SS G_CDS: 0.09 Total: -8.43 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.49 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.60 -10.22 -42.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160129.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.136 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.536 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.221 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.315 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.85 seconds