Wall clock time and date at job start Tue Mar 31 2020 18:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46898 * 109.47223 * 2 1 4 4 C 1.46895 * 111.00039 * 71.77976 * 3 2 1 5 5 C 1.46905 * 110.99674 * 195.73225 * 3 2 1 6 6 H 1.08998 * 109.47437 * 294.66805 * 5 3 2 7 7 C 1.50699 * 109.46577 * 174.66747 * 5 3 2 8 8 O 1.21283 * 120.00468 * 339.99687 * 7 5 3 9 9 N 1.34778 * 119.99709 * 160.00257 * 7 5 3 10 10 C 1.46498 * 120.00037 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47418 * 54.99352 * 11 10 9 13 13 C 1.53003 * 109.46956 * 294.99862 * 11 10 9 14 14 C 1.52999 * 109.47250 * 174.99742 * 11 10 9 15 15 N 1.46503 * 109.46643 * 184.99532 * 14 11 10 16 16 C 1.36941 * 119.99617 * 179.97438 * 15 14 11 17 17 H 1.08006 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00020 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47134 * 60.00011 * 20 18 16 22 22 H 1.48505 * 109.47197 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47219 * 299.99900 * 20 18 16 24 24 C 1.50694 * 109.47356 * 54.66982 * 5 3 2 25 25 C 1.38243 * 120.00010 * 45.82565 * 24 5 3 26 26 C 1.38230 * 119.99903 * 179.80971 * 25 24 5 27 27 C 1.38236 * 120.00269 * 0.40268 * 26 25 24 28 28 C 1.38238 * 119.99934 * 359.85675 * 27 26 25 29 29 C 1.38238 * 120.00030 * 226.10498 * 24 5 3 30 30 H 1.09002 * 109.46778 * 54.74569 * 1 2 3 31 31 H 1.09007 * 109.47483 * 174.74415 * 1 2 3 32 32 H 1.08999 * 109.47530 * 294.74383 * 1 2 3 33 33 H 1.09000 * 109.47405 * 239.99251 * 2 1 3 34 34 H 1.09006 * 109.47062 * 119.99657 * 2 1 3 35 35 H 1.09002 * 109.47168 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47044 * 299.99831 * 4 3 2 37 37 H 1.08992 * 109.47481 * 60.00206 * 4 3 2 38 38 H 0.97002 * 119.99997 * 0.27014 * 9 7 5 39 39 H 1.08999 * 109.47152 * 299.99353 * 10 9 7 40 40 H 1.09001 * 109.47260 * 59.99534 * 10 9 7 41 41 H 1.09000 * 109.47458 * 59.99529 * 13 11 10 42 42 H 1.08998 * 109.47381 * 179.97438 * 13 11 10 43 43 H 1.09005 * 109.46992 * 300.00065 * 13 11 10 44 44 H 1.08994 * 109.46988 * 304.99556 * 14 11 10 45 45 H 1.09003 * 109.46853 * 65.00022 * 14 11 10 46 46 H 0.96993 * 120.00619 * 0.02562 * 15 14 11 47 47 H 0.96999 * 120.00635 * 180.02562 * 19 18 16 48 48 H 1.07993 * 119.99967 * 0.02562 * 25 24 5 49 49 H 1.08003 * 119.99943 * 180.23493 * 26 25 24 50 50 H 1.08000 * 120.00716 * 179.82882 * 27 26 25 51 51 H 1.07998 * 120.00359 * 179.97438 * 28 27 26 52 52 H 1.07994 * 119.99833 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7908 2.0242 1.3026 5 6 3.4397 1.4412 -0.3719 6 1 4.0357 0.9439 0.3933 7 6 3.8717 2.8802 -0.4887 8 8 3.0427 3.7515 -0.6453 9 7 5.1794 3.1989 -0.4192 10 6 5.5993 4.5979 -0.5321 11 6 7.1229 4.6837 -0.4207 12 1 7.5790 4.0315 -1.1654 13 6 7.5576 4.2423 0.9783 14 6 7.5716 6.1262 -0.6628 15 7 9.0353 6.1868 -0.6745 16 6 9.6694 7.3837 -0.8762 17 1 9.0904 8.2829 -1.0270 18 6 11.0562 7.4411 -0.8878 19 7 11.7618 6.3452 -0.7054 20 14 11.9212 9.0737 -1.1636 21 1 11.5316 10.0272 -0.0939 22 1 13.3914 8.8668 -1.1302 23 1 11.5283 9.6249 -2.4853 24 6 3.6405 0.7475 -1.6945 25 6 2.7798 1.0018 -2.7460 26 6 2.9663 0.3684 -3.9605 27 6 4.0086 -0.5254 -4.1211 28 6 4.8660 -0.7837 -3.0680 29 6 4.6819 -0.1473 -1.8546 30 1 -0.3633 0.5932 -0.8392 31 1 -0.3634 -1.0234 -0.0941 32 1 -0.3634 0.4301 0.9333 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.1622 3.0486 1.2749 36 1 0.7231 2.0311 1.5214 37 1 2.3170 1.4676 2.0780 38 1 5.8428 2.5017 -0.2979 39 1 5.2823 4.9957 -1.4961 40 1 5.1435 5.1799 0.2688 41 1 7.2379 3.2146 1.1508 42 1 8.6430 4.3030 1.0576 43 1 7.1015 4.8945 1.7231 44 1 7.1860 6.4704 -1.6224 45 1 7.1878 6.7645 0.1331 46 1 9.5553 5.3792 -0.5401 47 1 12.7310 6.3853 -0.7131 48 1 1.9638 1.6977 -2.6197 49 1 2.2962 0.5699 -4.7831 50 1 4.1527 -1.0223 -5.0690 51 1 5.6800 -1.4823 -3.1932 52 1 5.3518 -0.3490 -1.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001482160131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:38 Heat of formation + Delta-G solvation = 2.767505 kcal Electronic energy + Delta-G solvation = -28937.301661 eV Core-core repulsion = 25129.945602 eV Total energy + Delta-G solvation = -3807.356058 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.84 seconds Orbital eigenvalues (eV) -40.70513 -38.99473 -37.52442 -36.57944 -34.34554 -32.89590 -32.17630 -31.11141 -30.74411 -30.03147 -27.64177 -26.52939 -25.68832 -24.64961 -22.86193 -22.54290 -22.16098 -21.14029 -20.37116 -19.65378 -17.56902 -17.19343 -16.81085 -16.53741 -16.00016 -15.63524 -15.18181 -14.95025 -14.80381 -14.68478 -14.23874 -14.21320 -13.62688 -13.60512 -13.53225 -13.24706 -13.04476 -12.99964 -12.66610 -12.51314 -12.41094 -12.24653 -12.08712 -12.04299 -11.70705 -11.36632 -11.25766 -11.07677 -11.04933 -10.89110 -10.69256 -10.56917 -10.42068 -10.11710 -9.92071 -9.66806 -9.13825 -9.00689 -8.89837 -8.86634 -8.62364 -6.91946 -5.76567 -3.04921 1.02011 1.19299 2.59908 2.95179 3.44951 3.45982 3.49060 3.50210 3.83346 4.35078 4.58035 4.59822 4.68362 4.73960 4.78649 4.85307 4.92770 4.99654 5.07369 5.18006 5.22433 5.24886 5.26016 5.31188 5.38944 5.39910 5.53661 5.58229 5.66695 5.68785 5.78405 5.81642 5.84449 5.95443 5.96655 6.01032 6.11412 6.20254 6.24461 6.30064 6.30900 6.39039 6.49331 6.63626 6.65954 6.74172 6.77344 6.77863 6.87312 7.50257 7.70465 8.22013 8.42632 9.53777 10.11128 10.46005 11.46399 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002305 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.294851 B =12144.374355 C =13104.830023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C 0.048 3.952 3 N -0.515 5.515 4 C 0.019 3.981 5 C 0.110 3.890 6 H 0.066 0.934 7 C 0.520 3.480 8 O -0.519 6.519 9 N -0.723 5.723 10 C 0.129 3.871 11 C -0.110 4.110 12 H 0.076 0.924 13 C -0.140 4.140 14 C 0.161 3.839 15 N -0.731 5.731 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.935 5.935 20 Si 0.908 3.092 21 H -0.286 1.286 22 H -0.291 1.291 23 H -0.286 1.286 24 C -0.085 4.085 25 C -0.082 4.082 26 C -0.124 4.124 27 C -0.115 4.115 28 C -0.121 4.121 29 C -0.111 4.111 30 H 0.065 0.935 31 H 0.057 0.943 32 H 0.053 0.947 33 H 0.079 0.921 34 H 0.033 0.967 35 H 0.080 0.920 36 H 0.074 0.926 37 H 0.023 0.977 38 H 0.398 0.602 39 H 0.068 0.932 40 H 0.068 0.932 41 H 0.041 0.959 42 H 0.069 0.931 43 H 0.053 0.947 44 H 0.021 0.979 45 H 0.022 0.978 46 H 0.384 0.616 47 H 0.255 0.745 48 H 0.133 0.867 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.124 0.876 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.022 -19.457 0.160 28.645 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.080 4.080 3 N -0.239 5.239 4 C -0.128 4.128 5 C -0.002 4.002 6 H 0.084 0.916 7 C 0.304 3.696 8 O -0.394 6.394 9 N -0.375 5.375 10 C 0.005 3.995 11 C -0.129 4.129 12 H 0.094 0.906 13 C -0.198 4.198 14 C 0.033 3.967 15 N -0.375 5.375 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.210 4.210 19 N -0.584 5.584 20 Si 0.739 3.261 21 H -0.213 1.213 22 H -0.217 1.217 23 H -0.213 1.213 24 C -0.086 4.086 25 C -0.100 4.100 26 C -0.142 4.142 27 C -0.133 4.133 28 C -0.139 4.139 29 C -0.130 4.130 30 H 0.084 0.916 31 H 0.076 0.924 32 H 0.072 0.928 33 H 0.098 0.902 34 H 0.051 0.949 35 H 0.098 0.902 36 H 0.092 0.908 37 H 0.041 0.959 38 H 0.233 0.767 39 H 0.086 0.914 40 H 0.086 0.914 41 H 0.060 0.940 42 H 0.088 0.912 43 H 0.072 0.928 44 H 0.039 0.961 45 H 0.040 0.960 46 H 0.218 0.782 47 H 0.065 0.935 48 H 0.151 0.849 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.142 0.858 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -21.864 -18.353 -0.313 28.548 hybrid contribution 1.627 -0.169 0.555 1.727 sum -20.237 -18.523 0.242 27.435 Atomic orbital electron populations 1.21743 0.94510 1.01477 1.02518 1.22185 0.96440 0.88211 1.01161 1.61744 1.14167 1.17377 1.30627 1.22520 1.02260 1.00328 0.87734 1.20460 0.91011 0.93471 0.95278 0.91586 1.20130 0.82549 0.89990 0.76889 1.90703 1.51563 1.49592 1.47503 1.46047 1.07245 1.10053 1.74177 1.21404 0.94865 0.81049 1.02164 1.21548 0.92952 0.99919 0.98503 0.90565 1.21784 1.02892 0.99276 0.95840 1.20570 0.86678 0.91578 0.97907 1.42329 0.99355 1.08579 1.87251 1.19196 0.89465 0.87300 1.41023 0.91213 1.24732 0.96260 0.97143 1.02910 1.69642 1.05480 1.26247 1.57014 0.86252 0.78575 0.83242 0.78034 1.21270 1.21710 1.21262 1.19342 0.96907 0.98048 0.94262 1.21123 0.98675 0.98386 0.91824 1.21211 0.98326 0.97207 0.97451 1.21221 0.95173 0.98042 0.98848 1.21095 0.99549 1.00193 0.93065 1.21038 0.97324 0.96544 0.98065 0.91620 0.92362 0.92812 0.90231 0.94855 0.90176 0.90773 0.95870 0.76733 0.91384 0.91361 0.94030 0.91154 0.92832 0.96137 0.96013 0.78221 0.93492 0.84915 0.85945 0.86079 0.85847 0.86012 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.04 9.85 37.15 0.37 -0.67 16 2 C 0.05 0.39 5.36 -3.83 -0.02 0.37 16 3 N -0.51 -5.19 3.81 -237.70 -0.90 -6.09 16 4 C 0.02 0.19 9.03 60.06 0.54 0.73 16 5 C 0.11 1.12 2.08 -70.02 -0.15 0.97 16 6 H 0.07 0.57 7.94 -51.93 -0.41 0.16 16 7 C 0.52 6.71 6.12 -10.99 -0.07 6.64 16 8 O -0.52 -8.50 15.15 5.55 0.08 -8.41 16 9 N -0.72 -8.66 5.28 -60.29 -0.32 -8.97 16 10 C 0.13 1.80 5.06 -4.04 -0.02 1.78 16 11 C -0.11 -1.70 2.46 -90.62 -0.22 -1.93 16 12 H 0.08 1.21 8.14 -51.93 -0.42 0.78 16 13 C -0.14 -2.06 8.94 37.16 0.33 -1.73 16 14 C 0.16 3.21 5.65 -4.04 -0.02 3.19 16 15 N -0.73 -18.36 5.33 -59.91 -0.32 -18.68 16 16 C -0.24 -6.71 9.99 -15.06 -0.15 -6.86 16 17 H 0.07 1.91 7.83 -52.48 -0.41 1.50 16 18 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 19 N -0.94 -28.18 13.06 55.49 0.72 -27.46 16 20 Si 0.91 22.52 29.55 -169.99 -5.02 17.50 16 21 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 22 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 23 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 24 C -0.08 -0.84 3.30 -104.62 -0.35 -1.18 16 25 C -0.08 -0.85 8.50 -39.58 -0.34 -1.19 16 26 C -0.12 -1.12 10.05 -39.59 -0.40 -1.52 16 27 C -0.11 -0.96 10.05 -39.58 -0.40 -1.35 16 28 C -0.12 -1.00 10.05 -39.58 -0.40 -1.40 16 29 C -0.11 -0.96 9.67 -39.58 -0.38 -1.34 16 30 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 31 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 32 H 0.05 0.37 6.98 -51.93 -0.36 0.01 16 33 H 0.08 0.68 5.98 -51.93 -0.31 0.37 16 34 H 0.03 0.25 8.03 -51.93 -0.42 -0.16 16 35 H 0.08 0.95 6.13 -51.93 -0.32 0.64 16 36 H 0.07 0.64 6.81 -51.93 -0.35 0.29 16 37 H 0.02 0.20 8.11 -51.93 -0.42 -0.22 16 38 H 0.40 3.97 7.66 -40.82 -0.31 3.66 16 39 H 0.07 1.03 8.14 -51.93 -0.42 0.60 16 40 H 0.07 0.99 8.14 -51.93 -0.42 0.56 16 41 H 0.04 0.49 7.19 -51.93 -0.37 0.12 16 42 H 0.07 1.21 7.18 -51.93 -0.37 0.84 16 43 H 0.05 0.79 8.14 -51.93 -0.42 0.36 16 44 H 0.02 0.42 8.14 -51.93 -0.42 0.00 16 45 H 0.02 0.44 8.14 -51.93 -0.42 0.02 16 46 H 0.38 10.01 6.85 -40.82 -0.28 9.73 16 47 H 0.26 7.46 8.31 -40.82 -0.34 7.12 16 48 H 0.13 1.53 7.90 -52.49 -0.41 1.11 16 49 H 0.12 0.90 8.06 -52.48 -0.42 0.48 16 50 H 0.12 0.77 8.06 -52.49 -0.42 0.35 16 51 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 52 H 0.12 0.83 7.99 -52.49 -0.42 0.41 16 LS Contribution 415.36 15.07 6.26 6.26 Total: -1.00 -32.55 415.36 -10.23 -42.78 By element: Atomic # 1 Polarization: 18.05 SS G_CDS: -8.96 Total: 9.09 kcal Atomic # 6 Polarization: -4.24 SS G_CDS: -1.76 Total: -6.01 kcal Atomic # 7 Polarization: -60.38 SS G_CDS: -0.82 Total: -61.20 kcal Atomic # 8 Polarization: -8.50 SS G_CDS: 0.08 Total: -8.41 kcal Atomic # 14 Polarization: 22.52 SS G_CDS: -5.02 Total: 17.50 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -32.55 -10.23 -42.78 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.543 kcal (2) G-P(sol) polarization free energy of solvation -32.549 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 12.993 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.226 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.775 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.84 seconds