Wall clock time and date at job start Tue Mar 31 2020 18:23:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52994 * 1 3 3 N 1.46898 * 109.47223 * 2 1 4 4 C 1.46895 * 111.00039 * 71.77976 * 3 2 1 5 5 C 1.46905 * 110.99674 * 195.73225 * 3 2 1 6 6 H 1.08998 * 109.47437 * 294.66805 * 5 3 2 7 7 C 1.50699 * 109.46577 * 174.66747 * 5 3 2 8 8 O 1.21283 * 120.00468 * 339.99687 * 7 5 3 9 9 N 1.34778 * 119.99709 * 160.00257 * 7 5 3 10 10 C 1.46498 * 120.00037 * 180.02562 * 9 7 5 11 11 C 1.53004 * 109.47400 * 179.97438 * 10 9 7 12 12 H 1.08997 * 109.47418 * 54.99352 * 11 10 9 13 13 C 1.53003 * 109.46956 * 294.99862 * 11 10 9 14 14 C 1.52999 * 109.47250 * 174.99742 * 11 10 9 15 15 N 1.46503 * 109.46643 * 184.99532 * 14 11 10 16 16 C 1.36941 * 119.99617 * 179.97438 * 15 14 11 17 17 H 1.08006 * 119.99952 * 359.97438 * 16 15 14 18 18 C 1.38809 * 120.00020 * 180.02562 * 16 15 14 19 19 N 1.31615 * 120.00101 * 0.02562 * 18 16 15 20 20 Si 1.86797 * 120.00098 * 179.97438 * 18 16 15 21 21 H 1.48495 * 109.47134 * 60.00011 * 20 18 16 22 22 H 1.48505 * 109.47197 * 179.97438 * 20 18 16 23 23 H 1.48497 * 109.47219 * 299.99900 * 20 18 16 24 24 C 1.50694 * 109.47356 * 54.66982 * 5 3 2 25 25 C 1.38243 * 120.00010 * 45.82565 * 24 5 3 26 26 C 1.38230 * 119.99903 * 179.80971 * 25 24 5 27 27 C 1.38236 * 120.00269 * 0.40268 * 26 25 24 28 28 C 1.38238 * 119.99934 * 359.85675 * 27 26 25 29 29 C 1.38238 * 120.00030 * 226.10498 * 24 5 3 30 30 H 1.09002 * 109.46778 * 54.74569 * 1 2 3 31 31 H 1.09007 * 109.47483 * 174.74415 * 1 2 3 32 32 H 1.08999 * 109.47530 * 294.74383 * 1 2 3 33 33 H 1.09000 * 109.47405 * 239.99251 * 2 1 3 34 34 H 1.09006 * 109.47062 * 119.99657 * 2 1 3 35 35 H 1.09002 * 109.47168 * 180.02562 * 4 3 2 36 36 H 1.09000 * 109.47044 * 299.99831 * 4 3 2 37 37 H 1.08992 * 109.47481 * 60.00206 * 4 3 2 38 38 H 0.97002 * 119.99997 * 0.27014 * 9 7 5 39 39 H 1.08999 * 109.47152 * 299.99353 * 10 9 7 40 40 H 1.09001 * 109.47260 * 59.99534 * 10 9 7 41 41 H 1.09000 * 109.47458 * 59.99529 * 13 11 10 42 42 H 1.08998 * 109.47381 * 179.97438 * 13 11 10 43 43 H 1.09005 * 109.46992 * 300.00065 * 13 11 10 44 44 H 1.08994 * 109.46988 * 304.99556 * 14 11 10 45 45 H 1.09003 * 109.46853 * 65.00022 * 14 11 10 46 46 H 0.96993 * 120.00619 * 0.02562 * 15 14 11 47 47 H 0.96999 * 120.00635 * 180.02562 * 19 18 16 48 48 H 1.07993 * 119.99967 * 0.02562 * 25 24 5 49 49 H 1.08003 * 119.99943 * 180.23493 * 26 25 24 50 50 H 1.08000 * 120.00716 * 179.82882 * 27 26 25 51 51 H 1.07998 * 120.00359 * 179.97438 * 28 27 26 52 52 H 1.07994 * 119.99833 * 359.97438 * 29 24 5 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.7908 2.0242 1.3026 5 6 3.4397 1.4412 -0.3719 6 1 4.0357 0.9439 0.3933 7 6 3.8717 2.8802 -0.4887 8 8 3.0427 3.7515 -0.6453 9 7 5.1794 3.1989 -0.4192 10 6 5.5993 4.5979 -0.5321 11 6 7.1229 4.6837 -0.4207 12 1 7.5790 4.0315 -1.1654 13 6 7.5576 4.2423 0.9783 14 6 7.5716 6.1262 -0.6628 15 7 9.0353 6.1868 -0.6745 16 6 9.6694 7.3837 -0.8762 17 1 9.0904 8.2829 -1.0270 18 6 11.0562 7.4411 -0.8878 19 7 11.7618 6.3452 -0.7054 20 14 11.9212 9.0737 -1.1636 21 1 11.5316 10.0272 -0.0939 22 1 13.3914 8.8668 -1.1302 23 1 11.5283 9.6249 -2.4853 24 6 3.6405 0.7475 -1.6945 25 6 2.7798 1.0018 -2.7460 26 6 2.9663 0.3684 -3.9605 27 6 4.0086 -0.5254 -4.1211 28 6 4.8660 -0.7837 -3.0680 29 6 4.6819 -0.1473 -1.8546 30 1 -0.3633 0.5932 -0.8392 31 1 -0.3634 -1.0234 -0.0941 32 1 -0.3634 0.4301 0.9333 33 1 1.8933 -0.5139 -0.8899 34 1 1.8933 -0.5138 0.8901 35 1 2.1622 3.0486 1.2749 36 1 0.7231 2.0311 1.5214 37 1 2.3170 1.4676 2.0780 38 1 5.8428 2.5017 -0.2979 39 1 5.2823 4.9957 -1.4961 40 1 5.1435 5.1799 0.2688 41 1 7.2379 3.2146 1.1508 42 1 8.6430 4.3030 1.0576 43 1 7.1015 4.8945 1.7231 44 1 7.1860 6.4704 -1.6224 45 1 7.1878 6.7645 0.1331 46 1 9.5553 5.3792 -0.5401 47 1 12.7310 6.3853 -0.7131 48 1 1.9638 1.6977 -2.6197 49 1 2.2962 0.5699 -4.7831 50 1 4.1527 -1.0223 -5.0690 51 1 5.6800 -1.4823 -3.1932 52 1 5.3518 -0.3490 -1.0319 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001482160131.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:23:37 Heat of formation + Delta-G solvation = -17.725565 kcal Electronic energy + Delta-G solvation = -28938.190307 eV Core-core repulsion = 25129.945602 eV Total energy + Delta-G solvation = -3808.244705 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.57504 -39.85370 -38.49731 -37.77524 -35.94028 -34.21859 -33.24261 -31.83546 -31.76068 -31.40054 -28.51864 -27.68270 -27.11022 -25.79919 -24.23081 -23.52724 -22.90243 -22.00401 -21.52716 -20.78920 -19.21230 -18.23474 -17.80644 -17.53588 -16.88230 -16.65214 -16.35745 -16.20965 -15.70549 -15.52707 -15.46847 -15.42028 -15.21814 -14.76063 -14.31493 -14.24865 -14.14257 -13.97311 -13.72341 -13.58794 -13.56761 -13.22318 -13.03345 -12.96034 -12.77873 -12.72263 -12.46208 -12.22193 -12.18031 -12.03230 -11.99344 -11.90099 -11.74135 -11.69044 -11.65556 -10.97000 -10.93568 -10.09495 -9.80435 -9.62367 -9.33585 -8.99789 -7.95483 -5.23833 0.34046 0.52207 1.47401 1.50187 1.56245 1.60833 2.00189 2.56356 2.76504 3.07364 3.37904 3.60685 3.71076 3.81085 3.89946 3.95927 4.07358 4.08877 4.17802 4.22589 4.32012 4.32653 4.34967 4.51255 4.53445 4.56294 4.62849 4.66869 4.69806 4.73283 4.76676 4.92342 4.94011 5.01860 5.03267 5.03943 5.10149 5.12180 5.18608 5.32493 5.36288 5.40332 5.47912 5.49498 5.55693 5.61734 5.64895 5.91815 6.07123 6.10909 6.27066 6.54941 7.23273 7.33936 8.08794 8.33567 9.27706 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.016320 B = 0.002305 C = 0.002136 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1715.294851 B =12144.374355 C =13104.830023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C 0.051 3.949 3 N -0.531 5.531 4 C 0.023 3.977 5 C 0.117 3.883 6 H 0.088 0.912 7 C 0.520 3.480 8 O -0.559 6.559 9 N -0.713 5.713 10 C 0.142 3.858 11 C -0.093 4.093 12 H 0.077 0.923 13 C -0.134 4.134 14 C 0.157 3.843 15 N -0.741 5.741 16 C -0.248 4.248 17 H 0.073 0.927 18 C -0.074 4.074 19 N -0.967 5.967 20 Si 0.973 3.027 21 H -0.278 1.278 22 H -0.294 1.294 23 H -0.279 1.279 24 C -0.093 4.093 25 C -0.098 4.098 26 C -0.133 4.133 27 C -0.118 4.118 28 C -0.125 4.125 29 C -0.113 4.113 30 H 0.051 0.949 31 H 0.073 0.927 32 H 0.055 0.945 33 H 0.076 0.924 34 H 0.044 0.956 35 H 0.054 0.946 36 H 0.081 0.919 37 H 0.037 0.963 38 H 0.411 0.589 39 H 0.055 0.945 40 H 0.065 0.935 41 H 0.075 0.925 42 H 0.043 0.957 43 H 0.052 0.948 44 H 0.017 0.983 45 H 0.021 0.979 46 H 0.377 0.623 47 H 0.252 0.748 48 H 0.112 0.888 49 H 0.133 0.867 50 H 0.141 0.859 51 H 0.145 0.855 52 H 0.143 0.857 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.164 -21.003 0.321 29.819 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.076 4.076 3 N -0.256 5.256 4 C -0.125 4.125 5 C 0.005 3.995 6 H 0.105 0.895 7 C 0.306 3.694 8 O -0.436 6.436 9 N -0.366 5.366 10 C 0.017 3.983 11 C -0.112 4.112 12 H 0.095 0.905 13 C -0.191 4.191 14 C 0.030 3.970 15 N -0.384 5.384 16 C -0.380 4.380 17 H 0.090 0.910 18 C -0.266 4.266 19 N -0.618 5.618 20 Si 0.802 3.198 21 H -0.205 1.205 22 H -0.220 1.220 23 H -0.205 1.205 24 C -0.094 4.094 25 C -0.117 4.117 26 C -0.151 4.151 27 C -0.136 4.136 28 C -0.143 4.143 29 C -0.131 4.131 30 H 0.071 0.929 31 H 0.091 0.909 32 H 0.074 0.926 33 H 0.094 0.906 34 H 0.062 0.938 35 H 0.073 0.927 36 H 0.099 0.901 37 H 0.055 0.945 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.083 0.917 41 H 0.094 0.906 42 H 0.062 0.938 43 H 0.071 0.929 44 H 0.035 0.965 45 H 0.039 0.961 46 H 0.209 0.791 47 H 0.061 0.939 48 H 0.130 0.870 49 H 0.151 0.849 50 H 0.159 0.841 51 H 0.163 0.837 52 H 0.161 0.839 Dipole moment (debyes) X Y Z Total from point charges -22.033 -19.916 -0.149 29.700 hybrid contribution 1.590 0.289 0.470 1.683 sum -20.442 -19.626 0.321 28.340 Atomic orbital electron populations 1.21722 0.93942 1.02195 1.02049 1.22185 0.96857 0.87105 1.01412 1.61712 1.14326 1.18659 1.30879 1.22448 1.02812 0.99077 0.88124 1.20408 0.91467 0.91381 0.96233 0.89472 1.20666 0.82129 0.90964 0.75675 1.90686 1.52610 1.51041 1.49271 1.45898 1.07525 1.09434 1.73762 1.21093 0.93444 0.82338 1.01398 1.21317 0.93799 0.96895 0.99186 0.90500 1.21713 1.01011 1.01403 0.94998 1.20711 0.84014 0.94721 0.97534 1.42489 1.01325 1.07494 1.87090 1.19584 0.90009 0.88425 1.39974 0.90953 1.25539 0.97049 1.00477 1.03538 1.69789 1.05342 1.28162 1.58481 0.85225 0.77027 0.79413 0.78174 1.20462 1.21962 1.20529 1.19356 0.97508 0.98743 0.93807 1.21061 0.98795 0.98891 0.92935 1.21394 0.99009 0.97374 0.97322 1.21517 0.94639 0.97589 0.99899 1.21431 0.99892 1.00182 0.92770 1.21296 0.96976 0.95875 0.98989 0.92948 0.90855 0.92574 0.90576 0.93792 0.92673 0.90076 0.94461 0.75224 0.92626 0.91714 0.90590 0.93821 0.92929 0.96487 0.96069 0.79053 0.93924 0.86973 0.84936 0.84103 0.83739 0.83891 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.87 9.85 71.98 0.71 -1.16 16 2 C 0.05 0.77 5.36 86.30 0.46 1.23 16 3 N -0.53 -10.30 3.81 -905.96 -3.45 -13.75 16 4 C 0.02 0.43 9.03 127.69 1.15 1.59 16 5 C 0.12 2.22 2.08 43.42 0.09 2.31 16 6 H 0.09 1.28 7.94 -2.39 -0.02 1.26 16 7 C 0.52 13.08 6.12 87.66 0.54 13.62 16 8 O -0.56 -18.60 15.15 -3.04 -0.05 -18.65 16 9 N -0.71 -16.11 5.28 -463.05 -2.45 -18.55 16 10 C 0.14 3.87 5.06 86.38 0.44 4.30 16 11 C -0.09 -2.80 2.46 -10.79 -0.03 -2.83 16 12 H 0.08 2.35 8.14 -2.39 -0.02 2.33 16 13 C -0.13 -3.76 8.94 71.98 0.64 -3.12 16 14 C 0.16 6.29 5.65 86.38 0.49 6.77 16 15 N -0.74 -37.49 5.33 -343.44 -1.83 -39.32 16 16 C -0.25 -13.99 9.99 84.03 0.84 -13.15 16 17 H 0.07 3.95 7.83 -2.91 -0.02 3.93 16 18 C -0.07 -4.24 5.50 84.86 0.47 -3.77 16 19 N -0.97 -58.77 13.06 21.65 0.28 -58.49 16 20 Si 0.97 46.31 29.55 68.60 2.03 48.34 16 21 H -0.28 -12.80 7.11 99.48 0.71 -12.10 16 22 H -0.29 -13.97 7.11 99.48 0.71 -13.27 16 23 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 24 C -0.09 -1.72 3.30 -19.87 -0.07 -1.78 16 25 C -0.10 -2.03 8.50 22.27 0.19 -1.84 16 26 C -0.13 -2.30 10.05 22.27 0.22 -2.08 16 27 C -0.12 -1.74 10.05 22.27 0.22 -1.51 16 28 C -0.12 -1.73 10.05 22.27 0.22 -1.51 16 29 C -0.11 -1.67 9.67 22.27 0.22 -1.45 16 30 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 31 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 32 H 0.06 0.71 6.98 -2.39 -0.02 0.69 16 33 H 0.08 1.20 5.98 -2.39 -0.01 1.19 16 34 H 0.04 0.57 8.03 -2.38 -0.02 0.55 16 35 H 0.05 1.32 6.13 -2.39 -0.01 1.30 16 36 H 0.08 1.36 6.81 -2.39 -0.02 1.34 16 37 H 0.04 0.57 8.11 -2.39 -0.02 0.55 16 38 H 0.41 7.18 7.66 -92.71 -0.71 6.47 16 39 H 0.06 1.68 8.14 -2.39 -0.02 1.66 16 40 H 0.06 1.84 8.14 -2.39 -0.02 1.82 16 41 H 0.08 1.59 7.19 -2.39 -0.02 1.58 16 42 H 0.04 1.48 7.18 -2.39 -0.02 1.46 16 43 H 0.05 1.48 8.14 -2.38 -0.02 1.46 16 44 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 45 H 0.02 0.86 8.14 -2.39 -0.02 0.84 16 46 H 0.38 19.91 6.85 -92.71 -0.64 19.28 16 47 H 0.25 14.85 8.31 -92.71 -0.77 14.08 16 48 H 0.11 2.72 7.90 -2.91 -0.02 2.70 16 49 H 0.13 1.88 8.06 -2.91 -0.02 1.86 16 50 H 0.14 1.44 8.06 -2.91 -0.02 1.42 16 51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 52 H 0.14 1.43 7.99 -2.91 -0.02 1.41 16 Total: -1.00 -70.51 415.36 0.91 -69.61 By element: Atomic # 1 Polarization: 35.64 SS G_CDS: -0.44 Total: 35.19 kcal Atomic # 6 Polarization: -11.18 SS G_CDS: 6.81 Total: -4.37 kcal Atomic # 7 Polarization: -122.67 SS G_CDS: -7.44 Total: -130.11 kcal Atomic # 8 Polarization: -18.60 SS G_CDS: -0.05 Total: -18.65 kcal Atomic # 14 Polarization: 46.31 SS G_CDS: 2.03 Total: 48.34 kcal Total: -70.51 0.91 -69.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001482160131.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.882 kcal (2) G-P(sol) polarization free energy of solvation -70.514 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.633 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.907 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.607 kcal (6) G-S(sol) free energy of system = (1) + (5) -17.726 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds