Wall clock time and date at job start Tue Mar 31 2020 17:45:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47374 * 2 1 4 4 C 1.52999 * 109.47192 * 240.00003 * 2 1 3 5 5 N 1.46497 * 109.47008 * 185.00433 * 4 2 1 6 6 C 1.46505 * 119.99912 * 269.99582 * 5 4 2 7 7 C 1.36941 * 120.00260 * 89.99966 * 5 4 2 8 8 H 1.07998 * 119.99958 * 24.70072 * 7 5 4 9 9 C 1.38811 * 119.99665 * 204.69763 * 7 5 4 10 10 N 1.31616 * 120.00370 * 10.41378 * 9 7 5 11 11 Si 1.86805 * 119.99695 * 190.41223 * 9 7 5 12 12 H 1.48501 * 109.46950 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47003 * 120.00149 * 11 9 7 14 14 H 1.48496 * 109.46830 * 239.99882 * 11 9 7 15 15 N 1.46506 * 109.47094 * 119.99916 * 2 1 3 16 16 C 1.34773 * 119.99922 * 275.00198 * 15 2 1 17 17 O 1.21553 * 120.00458 * 359.97438 * 16 15 2 18 18 C 1.47843 * 119.99953 * 179.97438 * 16 15 2 19 19 C 1.39597 * 120.14647 * 5.42909 * 18 16 15 20 20 C 1.37935 * 119.85570 * 179.72140 * 19 18 16 21 21 C 1.38380 * 120.14583 * 0.27901 * 20 19 18 22 22 C 1.38334 * 120.29047 * 359.97438 * 21 20 19 23 23 C 1.37976 * 120.14834 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.07686 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47499 * 258.52439 * 24 23 22 26 26 N 1.46900 * 109.47162 * 179.97438 * 25 24 23 27 27 C 1.46903 * 110.99757 * 66.05149 * 26 25 24 28 28 C 1.46901 * 111.00033 * 190.00052 * 26 25 24 29 29 H 1.09005 * 109.46583 * 300.00208 * 1 2 3 30 30 H 1.09000 * 109.46643 * 59.99696 * 1 2 3 31 31 H 1.08989 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46643 * 304.99995 * 4 2 1 33 33 H 1.08998 * 109.47351 * 65.00020 * 4 2 1 34 34 H 1.08993 * 109.47208 * 86.26453 * 6 5 4 35 35 H 1.08996 * 109.47597 * 206.26780 * 6 5 4 36 36 H 1.09003 * 109.46633 * 326.26846 * 6 5 4 37 37 H 0.96996 * 120.00282 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99992 * 95.00079 * 15 2 1 39 39 H 1.08003 * 120.06865 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.92557 * 180.25173 * 20 19 18 41 41 H 1.07993 * 119.85358 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.92653 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47125 * 18.52912 * 24 23 22 44 44 H 1.09002 * 109.47025 * 138.52240 * 24 23 22 45 45 H 1.08995 * 109.46870 * 300.00073 * 25 24 23 46 46 H 1.08994 * 109.46814 * 59.99940 * 25 24 23 47 47 H 1.08994 * 109.47519 * 59.99697 * 27 26 25 48 48 H 1.09000 * 109.46881 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.46632 * 299.99636 * 27 26 25 50 50 H 1.08997 * 109.46892 * 60.00031 * 28 26 25 51 51 H 1.09000 * 109.47094 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47225 * 300.00297 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5478 -2.8510 -0.5428 9 6 5.3683 -1.8185 -0.0822 10 7 5.9442 -0.6406 0.0327 11 14 6.2781 -3.3593 0.4544 12 1 5.4184 -4.5477 0.2226 13 1 7.5305 -3.4939 -0.3323 14 1 6.6089 -3.2610 1.8987 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8584 1.1612 2.4117 18 6 2.6393 -0.7153 3.5644 19 6 3.0786 -2.0377 3.4804 20 6 3.5421 -2.6804 4.6094 21 6 3.5668 -2.0191 5.8247 22 6 3.1280 -0.7104 5.9160 23 6 2.6630 -0.0556 4.7941 24 6 2.1849 1.3700 4.8954 25 6 0.6553 1.3942 4.9238 26 7 0.1893 2.7838 5.0232 27 6 0.5284 3.5407 3.8107 28 6 -1.2541 2.8371 5.2907 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 4.4851 1.0172 -1.0184 35 1 5.2994 -0.1803 -2.0531 36 1 3.8395 0.6540 -2.6368 37 1 6.8408 -0.5725 0.3964 38 1 2.2491 -1.6317 1.1527 39 1 3.0594 -2.5551 2.5325 40 1 3.8860 -3.7022 4.5448 41 1 3.9302 -2.5270 6.7058 42 1 3.1503 -0.1998 6.8674 43 1 2.5724 1.8190 5.8099 44 1 2.5413 1.9348 4.0341 45 1 0.2679 0.9452 4.0093 46 1 0.2990 0.8293 5.7851 47 1 0.0549 3.0743 2.9469 48 1 0.1724 4.5660 3.9112 49 1 1.6099 3.5436 3.6748 50 1 -1.4685 2.3285 6.2306 51 1 -1.5728 3.8772 5.3591 52 1 -1.7922 2.3451 4.4804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001483367015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:51 Heat of formation + Delta-G solvation = 18.587525 kcal Electronic energy + Delta-G solvation = -30907.823373 eV Core-core repulsion = 27101.153322 eV Total energy + Delta-G solvation = -3806.670051 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.07 seconds Orbital eigenvalues (eV) -40.04962 -38.07679 -37.24433 -36.20901 -34.07017 -32.73813 -31.79877 -30.79481 -29.54689 -28.56453 -27.34025 -26.19502 -25.62917 -24.59013 -23.44081 -21.97124 -21.44917 -20.73894 -19.95384 -19.63292 -17.39168 -16.65292 -15.87732 -15.72066 -15.31876 -15.08862 -14.80602 -14.67895 -14.48192 -14.34555 -14.14189 -13.70755 -13.33978 -13.15001 -12.91200 -12.81572 -12.59025 -12.43579 -12.16801 -12.12438 -11.77267 -11.71748 -11.51924 -11.43737 -11.38958 -11.28827 -11.17437 -10.90579 -10.76884 -10.70895 -10.52125 -10.41256 -10.21839 -10.04740 -9.88801 -8.93201 -8.69926 -8.58858 -8.52214 -8.18222 -8.11174 -6.78026 -5.80032 -3.25999 1.22183 1.60835 3.29213 3.36510 3.39763 3.42131 3.89787 4.12725 4.30166 4.41784 5.03521 5.08602 5.14215 5.26293 5.31561 5.33460 5.36770 5.44171 5.49323 5.55149 5.63157 5.68154 5.73118 5.83106 5.83525 5.87286 5.89588 5.97568 5.97729 6.08565 6.15597 6.19855 6.23764 6.26790 6.34185 6.44438 6.49488 6.56250 6.59547 6.68007 6.75219 6.86520 6.91541 7.13503 7.20786 7.24916 7.34300 7.36488 7.65385 7.74572 8.32848 8.35497 8.97959 9.16624 9.80265 10.31897 11.25613 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004947 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.306515 B = 5658.239516 C = 7340.495980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C 0.121 3.879 3 H 0.077 0.923 4 C 0.141 3.859 5 N -0.596 5.596 6 C 0.164 3.836 7 C -0.261 4.261 8 H 0.064 0.936 9 C 0.013 3.987 10 N -0.894 5.894 11 Si 0.889 3.111 12 H -0.277 1.277 13 H -0.289 1.289 14 H -0.287 1.287 15 N -0.682 5.682 16 C 0.559 3.441 17 O -0.549 6.549 18 C -0.121 4.121 19 C -0.073 4.073 20 C -0.135 4.135 21 C -0.100 4.100 22 C -0.133 4.133 23 C -0.027 4.027 24 C -0.085 4.085 25 C 0.075 3.925 26 N -0.547 5.547 27 C 0.032 3.968 28 C 0.026 3.974 29 H 0.049 0.951 30 H 0.057 0.943 31 H 0.050 0.950 32 H 0.047 0.953 33 H 0.051 0.949 34 H 0.017 0.983 35 H 0.056 0.944 36 H -0.008 1.008 37 H 0.252 0.748 38 H 0.402 0.598 39 H 0.130 0.870 40 H 0.123 0.877 41 H 0.121 0.879 42 H 0.123 0.877 43 H 0.064 0.936 44 H 0.110 0.890 45 H 0.043 0.957 46 H 0.059 0.941 47 H 0.031 0.969 48 H 0.053 0.947 49 H 0.075 0.925 50 H 0.062 0.938 51 H 0.064 0.936 52 H 0.021 0.979 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.590 0.567 8.680 13.704 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.013 3.987 3 H 0.095 0.905 4 C 0.013 3.987 5 N -0.318 5.318 6 C 0.019 3.981 7 C -0.391 4.391 8 H 0.082 0.918 9 C -0.187 4.187 10 N -0.538 5.538 11 Si 0.719 3.281 12 H -0.202 1.202 13 H -0.216 1.216 14 H -0.214 1.214 15 N -0.331 5.331 16 C 0.346 3.654 17 O -0.430 6.430 18 C -0.124 4.124 19 C -0.092 4.092 20 C -0.153 4.153 21 C -0.119 4.119 22 C -0.151 4.151 23 C -0.028 4.028 24 C -0.122 4.122 25 C -0.053 4.053 26 N -0.271 5.271 27 C -0.116 4.116 28 C -0.123 4.123 29 H 0.069 0.931 30 H 0.076 0.924 31 H 0.069 0.931 32 H 0.065 0.935 33 H 0.069 0.931 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.011 0.989 37 H 0.063 0.937 38 H 0.238 0.762 39 H 0.148 0.852 40 H 0.141 0.859 41 H 0.139 0.861 42 H 0.141 0.859 43 H 0.083 0.917 44 H 0.128 0.872 45 H 0.061 0.939 46 H 0.077 0.923 47 H 0.050 0.950 48 H 0.072 0.928 49 H 0.094 0.906 50 H 0.081 0.919 51 H 0.082 0.918 52 H 0.040 0.960 Dipole moment (debyes) X Y Z Total from point charges -10.367 1.658 9.091 13.888 hybrid contribution 0.556 -1.741 -0.307 1.853 sum -9.811 -0.083 8.784 13.169 Atomic orbital electron populations 1.22148 0.97055 1.01137 1.01362 1.21784 0.91566 0.98415 0.86952 0.90476 1.21192 0.86134 0.97794 0.93621 1.43851 0.98821 1.22567 1.66604 1.20770 0.94181 0.90626 0.92535 1.19079 0.98744 0.88821 1.32413 0.91783 1.25002 0.98866 0.95936 0.98880 1.70050 1.14649 1.21198 1.47868 0.86431 0.80308 0.83025 0.78365 1.20201 1.21581 1.21386 1.45666 1.64625 1.14285 1.08475 1.18085 0.77603 0.86441 0.83227 1.90610 1.51836 1.15329 1.85190 1.19939 1.03905 0.94624 0.93965 1.21437 0.95242 0.93686 0.98838 1.21061 1.01150 1.00377 0.92759 1.21231 0.98302 0.94742 0.97593 1.20979 1.01178 0.94966 0.97971 1.19930 0.95394 0.95870 0.91649 1.20809 0.95052 0.92285 1.04033 1.21922 0.94983 0.88309 1.00061 1.62027 1.14168 1.13448 1.37476 1.22318 1.02619 0.96555 0.90097 1.22333 0.88215 1.01525 1.00180 0.93140 0.92354 0.93133 0.93473 0.93060 0.96468 0.92492 0.98930 0.93723 0.76156 0.85229 0.85930 0.86147 0.85878 0.91749 0.87172 0.93869 0.92288 0.95010 0.92772 0.90626 0.91882 0.91761 0.96005 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.36 9.48 37.16 0.35 -2.00 16 2 C 0.12 2.21 2.88 -67.93 -0.20 2.01 16 3 H 0.08 1.63 7.58 -51.93 -0.39 1.24 16 4 C 0.14 2.67 5.37 -4.04 -0.02 2.65 16 5 N -0.60 -13.92 2.81 -181.12 -0.51 -14.43 16 6 C 0.16 3.94 9.03 59.85 0.54 4.48 16 7 C -0.26 -6.47 7.99 -15.06 -0.12 -6.59 16 8 H 0.06 1.54 7.85 -52.49 -0.41 1.13 16 9 C 0.01 0.34 5.09 -17.43 -0.09 0.25 16 10 N -0.89 -25.00 10.72 55.49 0.60 -24.41 16 11 Si 0.89 20.53 29.57 -169.99 -5.03 15.51 16 12 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 13 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 14 H -0.29 -6.73 7.11 56.52 0.40 -6.33 16 15 N -0.68 -12.98 4.44 -54.75 -0.24 -13.22 16 16 C 0.56 10.94 7.31 -12.33 -0.09 10.85 16 17 O -0.55 -11.20 10.62 5.32 0.06 -11.14 16 18 C -0.12 -2.19 5.87 -104.97 -0.62 -2.80 16 19 C -0.07 -1.24 9.53 -39.19 -0.37 -1.62 16 20 C -0.14 -2.00 10.03 -39.64 -0.40 -2.40 16 21 C -0.10 -1.34 10.04 -39.49 -0.40 -1.74 16 22 C -0.13 -1.86 9.66 -39.64 -0.38 -2.24 16 23 C -0.03 -0.44 5.17 -104.22 -0.54 -0.98 16 24 C -0.08 -1.34 4.55 -27.88 -0.13 -1.46 16 25 C 0.07 1.11 4.48 -3.82 -0.02 1.10 16 26 N -0.55 -7.68 5.02 -251.26 -1.26 -8.94 16 27 C 0.03 0.46 8.57 60.07 0.51 0.98 16 28 C 0.03 0.30 9.57 60.07 0.57 0.88 16 29 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 30 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 31 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 32 H 0.05 0.85 8.04 -51.93 -0.42 0.43 16 33 H 0.05 0.89 7.93 -51.93 -0.41 0.48 16 34 H 0.02 0.45 7.80 -51.93 -0.41 0.05 16 35 H 0.06 1.49 6.78 -51.93 -0.35 1.14 16 36 H -0.01 -0.17 7.94 -51.93 -0.41 -0.58 16 37 H 0.25 6.99 8.31 -40.82 -0.34 6.65 16 38 H 0.40 7.63 5.46 -40.82 -0.22 7.41 16 39 H 0.13 2.21 6.44 -52.48 -0.34 1.87 16 40 H 0.12 1.55 8.06 -52.49 -0.42 1.13 16 41 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 42 H 0.12 1.43 8.02 -52.49 -0.42 1.00 16 43 H 0.06 0.94 7.99 -51.93 -0.41 0.52 16 44 H 0.11 2.04 4.27 -51.93 -0.22 1.82 16 45 H 0.04 0.73 6.52 -51.93 -0.34 0.39 16 46 H 0.06 0.81 8.06 -51.93 -0.42 0.39 16 47 H 0.03 0.50 8.03 -51.93 -0.42 0.08 16 48 H 0.05 0.68 8.12 -51.93 -0.42 0.25 16 49 H 0.08 1.20 6.43 -51.93 -0.33 0.87 16 50 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 51 H 0.06 0.65 8.12 -51.93 -0.42 0.23 16 52 H 0.02 0.25 8.14 -51.93 -0.42 -0.17 16 LS Contribution 405.62 15.07 6.11 6.11 Total: -1.00 -28.79 405.62 -10.53 -39.31 By element: Atomic # 1 Polarization: 18.71 SS G_CDS: -8.87 Total: 9.84 kcal Atomic # 6 Polarization: 2.74 SS G_CDS: -1.38 Total: 1.36 kcal Atomic # 7 Polarization: -59.58 SS G_CDS: -1.42 Total: -61.00 kcal Atomic # 8 Polarization: -11.20 SS G_CDS: 0.06 Total: -11.14 kcal Atomic # 14 Polarization: 20.53 SS G_CDS: -5.03 Total: 15.51 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -28.79 -10.53 -39.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483367015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.903 kcal (2) G-P(sol) polarization free energy of solvation -28.789 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 29.113 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.526 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.315 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.588 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds