Wall clock time and date at job start Tue Mar 31 2020 17:45:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 H 1.09001 * 109.47374 * 2 1 4 4 C 1.52999 * 109.47192 * 240.00003 * 2 1 3 5 5 N 1.46497 * 109.47008 * 185.00433 * 4 2 1 6 6 C 1.46505 * 119.99912 * 269.99582 * 5 4 2 7 7 C 1.36941 * 120.00260 * 89.99966 * 5 4 2 8 8 H 1.07998 * 119.99958 * 24.70072 * 7 5 4 9 9 C 1.38811 * 119.99665 * 204.69763 * 7 5 4 10 10 N 1.31616 * 120.00370 * 10.41378 * 9 7 5 11 11 Si 1.86805 * 119.99695 * 190.41223 * 9 7 5 12 12 H 1.48501 * 109.46950 * 0.02562 * 11 9 7 13 13 H 1.48505 * 109.47003 * 120.00149 * 11 9 7 14 14 H 1.48496 * 109.46830 * 239.99882 * 11 9 7 15 15 N 1.46506 * 109.47094 * 119.99916 * 2 1 3 16 16 C 1.34773 * 119.99922 * 275.00198 * 15 2 1 17 17 O 1.21553 * 120.00458 * 359.97438 * 16 15 2 18 18 C 1.47843 * 119.99953 * 179.97438 * 16 15 2 19 19 C 1.39597 * 120.14647 * 5.42909 * 18 16 15 20 20 C 1.37935 * 119.85570 * 179.72140 * 19 18 16 21 21 C 1.38380 * 120.14583 * 0.27901 * 20 19 18 22 22 C 1.38334 * 120.29047 * 359.97438 * 21 20 19 23 23 C 1.37976 * 120.14834 * 359.97438 * 22 21 20 24 24 C 1.50699 * 120.07686 * 179.97438 * 23 22 21 25 25 C 1.53001 * 109.47499 * 258.52439 * 24 23 22 26 26 N 1.46900 * 109.47162 * 179.97438 * 25 24 23 27 27 C 1.46903 * 110.99757 * 66.05149 * 26 25 24 28 28 C 1.46901 * 111.00033 * 190.00052 * 26 25 24 29 29 H 1.09005 * 109.46583 * 300.00208 * 1 2 3 30 30 H 1.09000 * 109.46643 * 59.99696 * 1 2 3 31 31 H 1.08989 * 109.47018 * 180.02562 * 1 2 3 32 32 H 1.09000 * 109.46643 * 304.99995 * 4 2 1 33 33 H 1.08998 * 109.47351 * 65.00020 * 4 2 1 34 34 H 1.08993 * 109.47208 * 86.26453 * 6 5 4 35 35 H 1.08996 * 109.47597 * 206.26780 * 6 5 4 36 36 H 1.09003 * 109.46633 * 326.26846 * 6 5 4 37 37 H 0.96996 * 120.00282 * 179.97438 * 10 9 7 38 38 H 0.96994 * 119.99992 * 95.00079 * 15 2 1 39 39 H 1.08003 * 120.06865 * 359.97438 * 19 18 16 40 40 H 1.07999 * 119.92557 * 180.25173 * 20 19 18 41 41 H 1.07993 * 119.85358 * 179.97438 * 21 20 19 42 42 H 1.07998 * 119.92653 * 180.02562 * 22 21 20 43 43 H 1.08997 * 109.47125 * 18.52912 * 24 23 22 44 44 H 1.09002 * 109.47025 * 138.52240 * 24 23 22 45 45 H 1.08995 * 109.46870 * 300.00073 * 25 24 23 46 46 H 1.08994 * 109.46814 * 59.99940 * 25 24 23 47 47 H 1.08994 * 109.47519 * 59.99697 * 27 26 25 48 48 H 1.09000 * 109.46881 * 180.02562 * 27 26 25 49 49 H 1.09002 * 109.46632 * 299.99636 * 27 26 25 50 50 H 1.08997 * 109.46892 * 60.00031 * 28 26 25 51 51 H 1.09000 * 109.47094 * 180.02562 * 28 26 25 52 52 H 1.09000 * 109.47225 * 300.00297 * 28 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0401 -0.7212 -1.2492 5 7 3.5001 -0.8264 -1.1905 6 6 4.3344 0.2340 -1.7612 7 6 4.0850 -1.9160 -0.6022 8 1 3.5478 -2.8510 -0.5428 9 6 5.3683 -1.8185 -0.0822 10 7 5.9442 -0.6406 0.0327 11 14 6.2781 -3.3593 0.4544 12 1 5.4184 -4.5477 0.2226 13 1 7.5305 -3.4939 -0.3323 14 1 6.6089 -3.2610 1.8987 15 7 2.0184 -0.6906 1.1962 16 6 2.1471 -0.0183 2.3572 17 8 1.8584 1.1612 2.4117 18 6 2.6393 -0.7153 3.5644 19 6 3.0786 -2.0377 3.4804 20 6 3.5421 -2.6804 4.6094 21 6 3.5668 -2.0191 5.8247 22 6 3.1280 -0.7104 5.9160 23 6 2.6630 -0.0556 4.7941 24 6 2.1849 1.3700 4.8954 25 6 0.6553 1.3942 4.9238 26 7 0.1893 2.7838 5.0232 27 6 0.5284 3.5407 3.8107 28 6 -1.2541 2.8371 5.2907 29 1 -0.3633 0.5139 0.8900 30 1 -0.3632 0.5139 -0.8900 31 1 -0.3633 -1.0276 0.0005 32 1 1.6054 -1.7198 -1.2951 33 1 1.7517 -0.1583 -2.1370 34 1 4.4851 1.0172 -1.0184 35 1 5.2994 -0.1803 -2.0531 36 1 3.8395 0.6540 -2.6368 37 1 6.8408 -0.5725 0.3964 38 1 2.2491 -1.6317 1.1527 39 1 3.0594 -2.5551 2.5325 40 1 3.8860 -3.7022 4.5448 41 1 3.9302 -2.5270 6.7058 42 1 3.1503 -0.1998 6.8674 43 1 2.5724 1.8190 5.8099 44 1 2.5413 1.9348 4.0341 45 1 0.2679 0.9452 4.0093 46 1 0.2990 0.8293 5.7851 47 1 0.0549 3.0743 2.9469 48 1 0.1724 4.5660 3.9112 49 1 1.6099 3.5436 3.6748 50 1 -1.4685 2.3285 6.2306 51 1 -1.5728 3.8772 5.3591 52 1 -1.7922 2.3451 4.4804 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001483367015.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:45:50 Heat of formation + Delta-G solvation = 2.077041 kcal Electronic energy + Delta-G solvation = -30908.539322 eV Core-core repulsion = 27101.153322 eV Total energy + Delta-G solvation = -3807.385999 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -41.38794 -39.43966 -38.38777 -37.85631 -35.73944 -33.99604 -33.31538 -32.43875 -30.90723 -29.72895 -28.44344 -28.04355 -27.38064 -25.77902 -24.69503 -23.55940 -22.77439 -22.09923 -21.26445 -21.13805 -18.90327 -18.40414 -17.22411 -17.01385 -16.79335 -16.53775 -16.11953 -16.01128 -15.66601 -15.61836 -15.54289 -15.38836 -14.94587 -14.62965 -14.44268 -14.03588 -13.87393 -13.77850 -13.64100 -13.24763 -13.18878 -13.11684 -12.86634 -12.78368 -12.70098 -12.65444 -12.53062 -12.48920 -12.32913 -12.18896 -12.00682 -11.93239 -11.85999 -11.73682 -11.64665 -10.58773 -10.36879 -9.96356 -9.76396 -9.55221 -9.30449 -8.72732 -7.79573 -5.26364 -0.01087 0.42757 1.44397 1.48433 1.56317 2.07199 2.47988 2.53542 2.92505 3.09475 3.38871 3.70868 3.87096 3.91988 3.93047 4.16078 4.17938 4.19632 4.29014 4.36407 4.42779 4.51188 4.53205 4.53814 4.59085 4.67717 4.70605 4.74237 4.80067 4.84008 4.88957 4.91815 4.96069 4.99116 5.03055 5.06201 5.12687 5.16866 5.30872 5.32104 5.39660 5.42158 5.52161 5.64122 5.66339 5.71465 5.86022 5.99392 6.05827 6.16579 6.36769 6.83136 7.17779 7.49285 7.89556 8.37282 9.25837 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010824 B = 0.004947 C = 0.003814 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2586.306515 B = 5658.239516 C = 7340.495980 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.126 3.874 3 H 0.040 0.960 4 C 0.141 3.859 5 N -0.609 5.609 6 C 0.179 3.821 7 C -0.249 4.249 8 H 0.077 0.923 9 C -0.038 4.038 10 N -0.932 5.932 11 Si 0.944 3.056 12 H -0.256 1.256 13 H -0.302 1.302 14 H -0.293 1.293 15 N -0.685 5.685 16 C 0.548 3.452 17 O -0.566 6.566 18 C -0.149 4.149 19 C -0.091 4.091 20 C -0.140 4.140 21 C -0.089 4.089 22 C -0.130 4.130 23 C -0.041 4.041 24 C -0.077 4.077 25 C 0.086 3.914 26 N -0.551 5.551 27 C 0.041 3.959 28 C 0.025 3.975 29 H 0.036 0.964 30 H 0.079 0.921 31 H 0.067 0.933 32 H 0.065 0.935 33 H 0.072 0.928 34 H -0.018 1.018 35 H 0.030 0.970 36 H 0.023 0.977 37 H 0.241 0.759 38 H 0.401 0.599 39 H 0.120 0.880 40 H 0.145 0.855 41 H 0.160 0.840 42 H 0.153 0.847 43 H 0.077 0.923 44 H 0.077 0.923 45 H 0.016 0.984 46 H 0.075 0.925 47 H 0.011 0.989 48 H 0.075 0.925 49 H 0.053 0.947 50 H 0.078 0.922 51 H 0.080 0.920 52 H 0.016 0.984 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.027 -1.031 10.353 15.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.018 3.982 3 H 0.059 0.941 4 C 0.014 3.986 5 N -0.332 5.332 6 C 0.034 3.966 7 C -0.379 4.379 8 H 0.094 0.906 9 C -0.233 4.233 10 N -0.578 5.578 11 Si 0.774 3.226 12 H -0.180 1.180 13 H -0.229 1.229 14 H -0.220 1.220 15 N -0.334 5.334 16 C 0.336 3.664 17 O -0.448 6.448 18 C -0.152 4.152 19 C -0.110 4.110 20 C -0.158 4.158 21 C -0.107 4.107 22 C -0.148 4.148 23 C -0.043 4.043 24 C -0.114 4.114 25 C -0.042 4.042 26 N -0.275 5.275 27 C -0.107 4.107 28 C -0.123 4.123 29 H 0.055 0.945 30 H 0.098 0.902 31 H 0.086 0.914 32 H 0.084 0.916 33 H 0.090 0.910 34 H 0.000 1.000 35 H 0.049 0.951 36 H 0.041 0.959 37 H 0.051 0.949 38 H 0.238 0.762 39 H 0.138 0.862 40 H 0.163 0.837 41 H 0.178 0.822 42 H 0.171 0.829 43 H 0.096 0.904 44 H 0.095 0.905 45 H 0.035 0.965 46 H 0.093 0.907 47 H 0.029 0.971 48 H 0.094 0.906 49 H 0.072 0.928 50 H 0.097 0.903 51 H 0.099 0.901 52 H 0.034 0.966 Dipole moment (debyes) X Y Z Total from point charges -11.858 0.036 10.751 16.006 hybrid contribution 0.944 -1.220 -0.826 1.750 sum -10.914 -1.184 9.925 14.799 Atomic orbital electron populations 1.21996 0.94056 1.02349 1.01772 1.21640 0.93769 0.96154 0.86598 0.94130 1.21374 0.83509 0.99206 0.94529 1.44073 1.00699 1.21968 1.66441 1.20466 0.93717 0.89858 0.92555 1.19402 0.98480 0.89577 1.30402 0.90570 1.25614 0.99961 0.97918 0.99854 1.70242 1.14377 1.23220 1.49992 0.85537 0.78849 0.81066 0.77197 1.18005 1.22938 1.21994 1.45718 1.64855 1.14185 1.08656 1.18524 0.77405 0.86473 0.83987 1.90604 1.52579 1.16041 1.85618 1.19968 1.05837 0.95455 0.93964 1.21484 0.96437 0.93509 0.99557 1.21397 1.00425 1.01443 0.92542 1.21682 0.96369 0.94331 0.98308 1.21337 0.99810 0.95406 0.98214 1.20121 0.96061 0.96098 0.92006 1.20672 0.95717 0.91989 1.03018 1.21789 0.94293 0.88835 0.99321 1.62066 1.15964 1.12752 1.36694 1.22192 1.01083 0.97653 0.89759 1.22426 0.86366 1.02826 1.00658 0.94478 0.90171 0.91411 0.91640 0.91004 0.99993 0.95079 0.95882 0.94906 0.76229 0.86196 0.83710 0.82205 0.82941 0.90411 0.90513 0.96535 0.90705 0.97073 0.90623 0.92780 0.90285 0.90137 0.96563 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -4.15 9.48 71.98 0.68 -3.46 16 2 C 0.13 4.67 2.88 44.99 0.13 4.80 16 3 H 0.04 1.80 7.58 -2.39 -0.02 1.78 16 4 C 0.14 5.18 5.37 86.38 0.46 5.64 16 5 N -0.61 -28.53 2.81 -726.95 -2.04 -30.58 16 6 C 0.18 8.86 9.03 127.77 1.15 10.02 16 7 C -0.25 -12.30 7.99 84.03 0.67 -11.63 16 8 H 0.08 3.56 7.85 -2.91 -0.02 3.54 16 9 C -0.04 -1.99 5.09 84.86 0.43 -1.55 16 10 N -0.93 -54.17 10.72 21.65 0.23 -53.94 16 11 Si 0.94 42.51 29.57 68.60 2.03 44.54 16 12 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 13 H -0.30 -14.11 7.11 99.48 0.71 -13.41 16 14 H -0.29 -13.34 7.11 99.48 0.71 -12.63 16 15 N -0.69 -26.88 4.44 -445.40 -1.98 -28.85 16 16 C 0.55 22.51 7.31 86.79 0.63 23.14 16 17 O -0.57 -24.69 10.62 -3.88 -0.04 -24.73 16 18 C -0.15 -5.51 5.87 -20.09 -0.12 -5.63 16 19 C -0.09 -3.09 9.53 22.53 0.21 -2.87 16 20 C -0.14 -3.85 10.03 22.23 0.22 -3.62 16 21 C -0.09 -2.08 10.04 22.33 0.22 -1.85 16 22 C -0.13 -3.32 9.66 22.23 0.21 -3.10 16 23 C -0.04 -1.34 5.17 -19.61 -0.10 -1.44 16 24 C -0.08 -2.46 4.55 29.85 0.14 -2.32 16 25 C 0.09 2.54 4.48 86.30 0.39 2.93 16 26 N -0.55 -15.23 5.02 -948.86 -4.76 -19.99 16 27 C 0.04 1.23 8.57 127.69 1.09 2.33 16 28 C 0.03 0.54 9.57 127.69 1.22 1.77 16 29 H 0.04 1.17 8.14 -2.38 -0.02 1.16 16 30 H 0.08 1.97 8.14 -2.39 -0.02 1.95 16 31 H 0.07 1.74 8.14 -2.39 -0.02 1.72 16 32 H 0.07 2.20 8.04 -2.39 -0.02 2.18 16 33 H 0.07 2.36 7.93 -2.39 -0.02 2.34 16 34 H -0.02 -1.03 7.80 -2.39 -0.02 -1.05 16 35 H 0.03 1.66 6.78 -2.39 -0.02 1.65 16 36 H 0.02 0.97 7.94 -2.39 -0.02 0.95 16 37 H 0.24 14.01 8.31 -92.71 -0.77 13.24 16 38 H 0.40 15.52 5.46 -92.71 -0.51 15.01 16 39 H 0.12 4.16 6.44 -2.91 -0.02 4.14 16 40 H 0.15 3.25 8.06 -2.91 -0.02 3.23 16 41 H 0.16 2.49 8.06 -2.91 -0.02 2.46 16 42 H 0.15 2.95 8.02 -2.91 -0.02 2.93 16 43 H 0.08 2.21 7.99 -2.39 -0.02 2.19 16 44 H 0.08 3.02 4.27 -2.39 -0.01 3.01 16 45 H 0.02 0.58 6.52 -2.39 -0.02 0.56 16 46 H 0.07 1.96 8.06 -2.39 -0.02 1.94 16 47 H 0.01 0.36 8.03 -2.39 -0.02 0.34 16 48 H 0.08 1.87 8.12 -2.39 -0.02 1.85 16 49 H 0.05 1.83 6.43 -2.39 -0.02 1.81 16 50 H 0.08 1.46 8.12 -2.39 -0.02 1.44 16 51 H 0.08 1.47 8.12 -2.39 -0.02 1.45 16 52 H 0.02 0.36 8.14 -2.39 -0.02 0.34 16 Total: -1.00 -65.60 405.62 1.49 -64.12 By element: Atomic # 1 Polarization: 35.91 SS G_CDS: 0.39 Total: 36.30 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 7.66 Total: 13.13 kcal Atomic # 7 Polarization: -124.81 SS G_CDS: -8.55 Total: -133.36 kcal Atomic # 8 Polarization: -24.69 SS G_CDS: -0.04 Total: -24.73 kcal Atomic # 14 Polarization: 42.51 SS G_CDS: 2.03 Total: 44.54 kcal Total: -65.60 1.49 -64.12 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001483367015.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.192 kcal (2) G-P(sol) polarization free energy of solvation -65.603 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 0.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.115 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.077 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds