Wall clock time and date at job start Tue Mar 31 2020 17:36:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.36932 * 120.00140 * 84.99833 * 4 2 1 6 6 H 1.07994 * 120.00447 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46920 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47001 * 120.00056 * 9 7 5 12 12 H 1.48500 * 109.47076 * 239.99780 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 H 1.09000 * 109.46875 * 184.99989 * 13 2 1 15 15 C 1.53000 * 109.47060 * 65.00062 * 13 2 1 16 16 N 1.46500 * 109.47295 * 305.00389 * 13 2 1 17 17 C 1.34771 * 120.00053 * 205.00025 * 16 13 2 18 18 O 1.21287 * 120.00088 * 359.97438 * 17 16 13 19 19 C 1.50702 * 120.00374 * 179.97438 * 17 16 13 20 20 N 1.46893 * 109.47220 * 179.97438 * 19 17 16 21 21 C 1.46901 * 111.00055 * 66.04948 * 20 19 17 22 22 C 1.46911 * 110.99827 * 189.99944 * 20 19 17 23 23 C 1.52997 * 109.46898 * 169.99906 * 22 20 19 24 24 C 1.50697 * 109.46950 * 179.97438 * 23 22 20 25 25 C 1.38237 * 120.00383 * 269.72957 * 24 23 22 26 26 C 1.38239 * 120.00005 * 179.76547 * 25 24 23 27 27 C 1.38236 * 119.99732 * 0.50815 * 26 25 24 28 28 C 1.38231 * 120.00481 * 359.74568 * 27 26 25 29 29 C 1.38239 * 119.99723 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 34 34 H 0.97001 * 119.99679 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47227 * 300.00275 * 15 13 2 36 36 H 1.09006 * 109.46717 * 59.99823 * 15 13 2 37 37 H 1.08995 * 109.47185 * 179.97438 * 15 13 2 38 38 H 0.97002 * 120.00109 * 24.99709 * 16 13 2 39 39 H 1.09004 * 109.47198 * 300.00319 * 19 17 16 40 40 H 1.08999 * 109.46642 * 59.99744 * 19 17 16 41 41 H 1.09006 * 109.47236 * 59.99778 * 21 20 19 42 42 H 1.08999 * 109.47038 * 179.97438 * 21 20 19 43 43 H 1.08989 * 109.46920 * 299.99787 * 21 20 19 44 44 H 1.08991 * 109.47109 * 290.00131 * 22 20 19 45 45 H 1.08998 * 109.46612 * 50.00116 * 22 20 19 46 46 H 1.09001 * 109.47416 * 299.99993 * 23 22 20 47 47 H 1.08999 * 109.46873 * 60.00344 * 23 22 20 48 48 H 1.07997 * 119.99922 * 0.02562 * 25 24 23 49 49 H 1.07998 * 119.99735 * 180.22907 * 26 25 24 50 50 H 1.08004 * 119.99750 * 179.72595 * 27 26 25 51 51 H 1.07994 * 120.00447 * 179.97438 * 28 27 26 52 52 H 1.08000 * 119.99987 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6617 -3.5093 8 7 2.9245 -1.9388 -3.4503 9 14 2.7892 0.2701 -5.1185 10 1 2.3742 1.6823 -4.9212 11 1 4.2060 0.2272 -5.5615 12 1 1.9281 -0.3585 -6.1523 13 6 2.0401 -0.7213 1.2492 14 1 3.1264 -0.6443 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4559 -0.1038 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1464 -0.7867 3.7063 19 6 1.4906 0.4417 4.8548 20 7 2.3678 0.2034 6.0087 21 6 3.6512 0.8997 5.8471 22 6 1.7089 0.5979 7.2612 23 6 2.5397 0.1104 8.4499 24 6 1.8642 0.5156 9.7346 25 6 2.1686 1.7290 10.3229 26 6 1.5453 2.1027 11.4988 27 6 0.6254 1.2584 12.0920 28 6 0.3249 0.0427 11.5066 29 6 0.9447 -0.3289 10.3282 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2479 -2.3959 -4.2423 35 1 0.5490 -2.2724 1.1419 36 1 2.0700 -2.6549 0.3001 37 1 1.9990 -2.7094 2.0776 38 1 0.6118 0.3700 2.3794 39 1 1.3850 1.5146 4.6936 40 1 0.5107 0.0051 5.0474 41 1 3.4743 1.9717 5.7580 42 1 4.2811 0.7068 6.7155 43 1 4.1501 0.5378 4.9483 44 1 1.6219 1.6836 7.2996 45 1 0.7153 0.1519 7.3050 46 1 2.6268 -0.9754 8.4115 47 1 3.5333 0.5564 8.4059 48 1 2.8902 2.3868 9.8615 49 1 1.7804 3.0523 11.9564 50 1 0.1418 1.5484 13.0131 51 1 -0.3934 -0.6170 11.9703 52 1 0.7102 -1.2789 9.8710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001485193519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:29 Heat of formation + Delta-G solvation = 5.243759 kcal Electronic energy + Delta-G solvation = -27855.099196 eV Core-core repulsion = 24047.850516 eV Total energy + Delta-G solvation = -3807.248680 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -39.98895 -39.58772 -37.68517 -36.51629 -33.87446 -33.41165 -31.84490 -31.23787 -29.87281 -28.89865 -28.20174 -27.84299 -25.43912 -24.36500 -23.19875 -22.91852 -22.08737 -20.88426 -20.22739 -19.15596 -17.54492 -17.17801 -17.02724 -16.09129 -16.01813 -15.60305 -15.31485 -14.97051 -14.79995 -14.51501 -14.29856 -14.16327 -13.77435 -13.59776 -13.35758 -13.26578 -13.11583 -12.94364 -12.69628 -12.47767 -12.17317 -12.01989 -11.82529 -11.70139 -11.55211 -11.50720 -11.30789 -11.26268 -10.99998 -10.93843 -10.84130 -10.43678 -10.23387 -9.95376 -9.75252 -9.53588 -9.27625 -9.03960 -8.95216 -8.76018 -8.48306 -7.00769 -5.79171 -3.08601 0.99184 1.04615 2.83007 3.12712 3.41982 3.43867 3.47745 3.49912 3.86770 4.46798 4.53424 4.57820 4.65354 4.74642 4.78020 4.82689 4.89072 5.09862 5.11298 5.16364 5.18583 5.25750 5.37391 5.40338 5.44553 5.49654 5.55615 5.63625 5.64073 5.66085 5.72363 5.81148 5.85244 6.05455 6.09564 6.11446 6.16386 6.18252 6.30463 6.31729 6.41053 6.49168 6.64914 6.65995 6.71297 6.72349 6.84086 6.96800 7.07923 7.68226 7.75767 8.39046 8.47847 9.50713 10.06467 10.41225 11.43470 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001627 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.292415 B =17201.866169 C =17282.622609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.168 3.832 3 H 0.050 0.950 4 N -0.720 5.720 5 C -0.241 4.241 6 H 0.071 0.929 7 C -0.012 4.012 8 N -0.931 5.931 9 Si 0.907 3.093 10 H -0.281 1.281 11 H -0.291 1.291 12 H -0.292 1.292 13 C 0.138 3.862 14 H 0.087 0.913 15 C -0.158 4.158 16 N -0.722 5.722 17 C 0.511 3.489 18 O -0.524 6.524 19 C 0.035 3.965 20 N -0.523 5.523 21 C 0.015 3.985 22 C 0.063 3.937 23 C -0.079 4.079 24 C -0.078 4.078 25 C -0.118 4.118 26 C -0.120 4.120 27 C -0.127 4.127 28 C -0.119 4.119 29 C -0.115 4.115 30 H 0.053 0.947 31 H 0.032 0.968 32 H 0.056 0.944 33 H 0.386 0.614 34 H 0.255 0.745 35 H 0.055 0.945 36 H 0.075 0.925 37 H 0.050 0.950 38 H 0.396 0.604 39 H 0.062 0.938 40 H 0.101 0.899 41 H 0.020 0.980 42 H 0.068 0.932 43 H 0.092 0.908 44 H 0.035 0.965 45 H 0.076 0.924 46 H 0.083 0.917 47 H 0.075 0.925 48 H 0.120 0.880 49 H 0.120 0.880 50 H 0.119 0.881 51 H 0.121 0.879 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.344 7.095 30.086 31.556 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C 0.057 3.943 3 H 0.068 0.932 4 N -0.363 5.363 5 C -0.372 4.372 6 H 0.089 0.911 7 C -0.208 4.208 8 N -0.579 5.579 9 Si 0.738 3.262 10 H -0.206 1.206 11 H -0.218 1.218 12 H -0.219 1.219 13 C 0.033 3.967 14 H 0.105 0.895 15 C -0.217 4.217 16 N -0.376 5.376 17 C 0.295 3.705 18 O -0.400 6.400 19 C -0.096 4.096 20 N -0.247 5.247 21 C -0.133 4.133 22 C -0.065 4.065 23 C -0.117 4.117 24 C -0.079 4.079 25 C -0.136 4.136 26 C -0.138 4.138 27 C -0.145 4.145 28 C -0.137 4.137 29 C -0.133 4.133 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.075 0.925 33 H 0.222 0.778 34 H 0.065 0.935 35 H 0.074 0.926 36 H 0.094 0.906 37 H 0.070 0.930 38 H 0.231 0.769 39 H 0.080 0.920 40 H 0.119 0.881 41 H 0.038 0.962 42 H 0.087 0.913 43 H 0.110 0.890 44 H 0.053 0.947 45 H 0.094 0.906 46 H 0.102 0.898 47 H 0.093 0.907 48 H 0.138 0.862 49 H 0.138 0.862 50 H 0.137 0.863 51 H 0.139 0.861 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -5.445 6.277 29.996 31.125 hybrid contribution -0.554 1.294 -0.974 1.712 sum -5.999 7.571 29.022 30.587 Atomic orbital electron populations 1.22532 0.99363 1.01255 0.99666 1.20363 0.92144 0.95540 0.86255 0.93178 1.42461 1.78192 1.10806 1.04837 1.19269 1.36779 0.93961 0.87158 0.91092 1.24745 1.01990 0.95987 0.98093 1.69671 1.50719 1.08660 1.28862 0.86120 0.77336 0.78753 0.83965 1.20586 1.21846 1.21880 1.21288 0.98928 0.92829 0.83615 0.89539 1.22131 1.01399 0.95895 1.02254 1.46248 1.25891 1.57020 1.08413 1.20396 0.85277 0.80591 0.84203 1.90673 1.22244 1.41932 1.85104 1.21995 0.97561 0.99701 0.90323 1.61626 1.04074 1.58561 1.00471 1.22640 0.91282 0.94994 1.04387 1.22106 0.97801 0.98124 0.88491 1.20616 0.98468 1.02659 0.89910 1.19906 0.97017 0.94498 0.96473 1.21089 1.00213 0.96260 0.95997 1.21154 0.97004 0.99643 0.95962 1.21157 0.98502 0.94726 1.00120 1.21172 0.99841 0.96734 0.95960 1.21126 0.96654 0.99740 0.95816 0.92799 0.94893 0.92462 0.77767 0.93485 0.92629 0.90630 0.93049 0.76858 0.92039 0.88052 0.96192 0.91287 0.88983 0.94675 0.90592 0.89801 0.90692 0.86192 0.86181 0.86260 0.86108 0.85883 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -2.76 9.01 37.16 0.33 -2.43 16 2 C 0.17 3.19 2.93 -67.93 -0.20 2.99 16 3 H 0.05 0.98 8.08 -51.93 -0.42 0.56 16 4 N -0.72 -17.52 5.03 -53.43 -0.27 -17.79 16 5 C -0.24 -6.55 9.93 -15.06 -0.15 -6.70 16 6 H 0.07 1.88 7.83 -52.49 -0.41 1.46 16 7 C -0.01 -0.34 5.50 -17.43 -0.10 -0.43 16 8 N -0.93 -27.86 13.06 55.49 0.72 -27.13 16 9 Si 0.91 22.19 29.55 -169.99 -5.02 17.17 16 10 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 11 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 12 H -0.29 -7.18 7.11 56.52 0.40 -6.77 16 13 C 0.14 2.36 2.62 -67.93 -0.18 2.18 16 14 H 0.09 1.71 7.58 -51.93 -0.39 1.32 16 15 C -0.16 -2.70 9.00 37.16 0.33 -2.36 16 16 N -0.72 -9.69 4.99 -53.81 -0.27 -9.96 16 17 C 0.51 7.11 7.52 -10.99 -0.08 7.03 16 18 O -0.52 -9.39 13.97 5.55 0.08 -9.31 16 19 C 0.04 0.36 5.45 -4.98 -0.03 0.33 16 20 N -0.52 -5.60 4.50 -244.37 -1.10 -6.70 16 21 C 0.01 0.16 9.01 60.06 0.54 0.70 16 22 C 0.06 0.52 4.94 -3.82 -0.02 0.50 16 23 C -0.08 -0.62 5.28 -27.89 -0.15 -0.77 16 24 C -0.08 -0.61 5.13 -104.62 -0.54 -1.15 16 25 C -0.12 -0.87 9.70 -39.58 -0.38 -1.25 16 26 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 27 C -0.13 -0.85 10.05 -39.58 -0.40 -1.25 16 28 C -0.12 -0.82 10.05 -39.58 -0.40 -1.22 16 29 C -0.12 -0.86 9.70 -39.58 -0.38 -1.25 16 30 H 0.05 0.90 6.57 -51.93 -0.34 0.56 16 31 H 0.03 0.41 6.29 -51.93 -0.33 0.09 16 32 H 0.06 1.03 8.14 -51.93 -0.42 0.61 16 33 H 0.39 9.99 5.77 -40.82 -0.24 9.75 16 34 H 0.26 7.40 8.31 -40.82 -0.34 7.06 16 35 H 0.05 0.87 6.57 -51.93 -0.34 0.53 16 36 H 0.07 1.44 6.29 -51.93 -0.33 1.11 16 37 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 38 H 0.40 4.28 6.58 -40.82 -0.27 4.01 16 39 H 0.06 0.53 8.12 -51.93 -0.42 0.11 16 40 H 0.10 0.83 7.93 -51.93 -0.41 0.42 16 41 H 0.02 0.19 8.14 -51.93 -0.42 -0.23 16 42 H 0.07 0.66 6.30 -51.93 -0.33 0.33 16 43 H 0.09 1.26 5.88 -51.93 -0.31 0.96 16 44 H 0.04 0.28 8.12 -51.93 -0.42 -0.14 16 45 H 0.08 0.59 7.93 -51.93 -0.41 0.18 16 46 H 0.08 0.71 8.09 -51.93 -0.42 0.29 16 47 H 0.07 0.58 6.41 -51.93 -0.33 0.24 16 48 H 0.12 0.75 8.06 -52.49 -0.42 0.32 16 49 H 0.12 0.60 8.06 -52.49 -0.42 0.18 16 50 H 0.12 0.57 8.06 -52.48 -0.42 0.14 16 51 H 0.12 0.61 8.06 -52.49 -0.42 0.19 16 52 H 0.12 0.79 8.06 -52.49 -0.42 0.37 16 LS Contribution 411.64 15.07 6.20 6.20 Total: -1.00 -32.29 411.64 -10.47 -42.77 By element: Atomic # 1 Polarization: 19.68 SS G_CDS: -8.63 Total: 11.05 kcal Atomic # 6 Polarization: -4.10 SS G_CDS: -2.19 Total: -6.29 kcal Atomic # 7 Polarization: -60.67 SS G_CDS: -0.91 Total: -61.59 kcal Atomic # 8 Polarization: -9.39 SS G_CDS: 0.08 Total: -9.31 kcal Atomic # 14 Polarization: 22.19 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -32.29 -10.47 -42.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485193519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 48.012 kcal (2) G-P(sol) polarization free energy of solvation -32.294 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 15.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.474 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.244 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds