Wall clock time and date at job start Tue Mar 31 2020 17:36:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 H 1.09001 * 109.46998 * 2 1 4 4 N 1.46500 * 109.47249 * 240.00642 * 2 1 3 5 5 C 1.36932 * 120.00140 * 84.99833 * 4 2 1 6 6 H 1.07994 * 120.00447 * 359.97438 * 5 4 2 7 7 C 1.38813 * 119.99838 * 180.02562 * 5 4 2 8 8 N 1.31623 * 120.00145 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99922 * 179.97438 * 7 5 4 10 10 H 1.48501 * 109.46920 * 359.97438 * 9 7 5 11 11 H 1.48505 * 109.47001 * 120.00056 * 9 7 5 12 12 H 1.48500 * 109.47076 * 239.99780 * 9 7 5 13 13 C 1.52997 * 109.47127 * 120.00132 * 2 1 3 14 14 H 1.09000 * 109.46875 * 184.99989 * 13 2 1 15 15 C 1.53000 * 109.47060 * 65.00062 * 13 2 1 16 16 N 1.46500 * 109.47295 * 305.00389 * 13 2 1 17 17 C 1.34771 * 120.00053 * 205.00025 * 16 13 2 18 18 O 1.21287 * 120.00088 * 359.97438 * 17 16 13 19 19 C 1.50702 * 120.00374 * 179.97438 * 17 16 13 20 20 N 1.46893 * 109.47220 * 179.97438 * 19 17 16 21 21 C 1.46901 * 111.00055 * 66.04948 * 20 19 17 22 22 C 1.46911 * 110.99827 * 189.99944 * 20 19 17 23 23 C 1.52997 * 109.46898 * 169.99906 * 22 20 19 24 24 C 1.50697 * 109.46950 * 179.97438 * 23 22 20 25 25 C 1.38237 * 120.00383 * 269.72957 * 24 23 22 26 26 C 1.38239 * 120.00005 * 179.76547 * 25 24 23 27 27 C 1.38236 * 119.99732 * 0.50815 * 26 25 24 28 28 C 1.38231 * 120.00481 * 359.74568 * 27 26 25 29 29 C 1.38239 * 119.99723 * 0.02562 * 28 27 26 30 30 H 1.09001 * 109.47002 * 179.97438 * 1 2 3 31 31 H 1.08993 * 109.46955 * 299.99880 * 1 2 3 32 32 H 1.09000 * 109.47050 * 59.99708 * 1 2 3 33 33 H 0.97005 * 119.99374 * 264.99912 * 4 2 1 34 34 H 0.97001 * 119.99679 * 180.02562 * 8 7 5 35 35 H 1.09000 * 109.47227 * 300.00275 * 15 13 2 36 36 H 1.09006 * 109.46717 * 59.99823 * 15 13 2 37 37 H 1.08995 * 109.47185 * 179.97438 * 15 13 2 38 38 H 0.97002 * 120.00109 * 24.99709 * 16 13 2 39 39 H 1.09004 * 109.47198 * 300.00319 * 19 17 16 40 40 H 1.08999 * 109.46642 * 59.99744 * 19 17 16 41 41 H 1.09006 * 109.47236 * 59.99778 * 21 20 19 42 42 H 1.08999 * 109.47038 * 179.97438 * 21 20 19 43 43 H 1.08989 * 109.46920 * 299.99787 * 21 20 19 44 44 H 1.08991 * 109.47109 * 290.00131 * 22 20 19 45 45 H 1.08998 * 109.46612 * 50.00116 * 22 20 19 46 46 H 1.09001 * 109.47416 * 299.99993 * 23 22 20 47 47 H 1.08999 * 109.46873 * 60.00344 * 23 22 20 48 48 H 1.07997 * 119.99922 * 0.02562 * 25 24 23 49 49 H 1.07998 * 119.99735 * 180.22907 * 26 25 24 50 50 H 1.08004 * 119.99750 * 179.72595 * 27 26 25 51 51 H 1.07994 * 120.00447 * 179.97438 * 28 27 26 52 52 H 1.08000 * 119.99987 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 7 2.0184 -0.6905 -1.1962 5 6 2.1492 -0.0073 -2.3757 6 1 1.8920 1.0405 -2.4243 7 6 2.6114 -0.6617 -3.5093 8 7 2.9245 -1.9388 -3.4503 9 14 2.7892 0.2701 -5.1185 10 1 2.3742 1.6823 -4.9212 11 1 4.2060 0.2272 -5.5615 12 1 1.9281 -0.3585 -6.1523 13 6 2.0401 -0.7213 1.2492 14 1 3.1264 -0.6443 1.2951 15 6 1.6353 -2.1955 1.1879 16 7 1.4559 -0.1038 2.4424 17 6 2.0912 -0.1939 3.6275 18 8 3.1464 -0.7867 3.7063 19 6 1.4906 0.4417 4.8548 20 7 2.3678 0.2034 6.0087 21 6 3.6512 0.8997 5.8471 22 6 1.7089 0.5979 7.2612 23 6 2.5397 0.1104 8.4499 24 6 1.8642 0.5156 9.7346 25 6 2.1686 1.7290 10.3229 26 6 1.5453 2.1027 11.4988 27 6 0.6254 1.2584 12.0920 28 6 0.3249 0.0427 11.5066 29 6 0.9447 -0.3289 10.3282 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8899 32 1 -0.3633 0.5139 -0.8900 33 1 2.2491 -1.6317 -1.1527 34 1 3.2479 -2.3959 -4.2423 35 1 0.5490 -2.2724 1.1419 36 1 2.0700 -2.6549 0.3001 37 1 1.9990 -2.7094 2.0776 38 1 0.6118 0.3700 2.3794 39 1 1.3850 1.5146 4.6936 40 1 0.5107 0.0051 5.0474 41 1 3.4743 1.9717 5.7580 42 1 4.2811 0.7068 6.7155 43 1 4.1501 0.5378 4.9483 44 1 1.6219 1.6836 7.2996 45 1 0.7153 0.1519 7.3050 46 1 2.6268 -0.9754 8.4115 47 1 3.5333 0.5564 8.4059 48 1 2.8902 2.3868 9.8615 49 1 1.7804 3.0523 11.9564 50 1 0.1418 1.5484 13.0131 51 1 -0.3934 -0.6170 11.9703 52 1 0.7102 -1.2789 9.8710 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001485193519.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:36:28 Heat of formation + Delta-G solvation = -15.296496 kcal Electronic energy + Delta-G solvation = -27855.989888 eV Core-core repulsion = 24047.850516 eV Total energy + Delta-G solvation = -3808.139372 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.95 seconds Orbital eigenvalues (eV) -41.06385 -40.19115 -38.80329 -37.70144 -35.54243 -34.04604 -33.54040 -31.72629 -31.30239 -29.85120 -29.65358 -28.72814 -26.27868 -26.10880 -24.71642 -23.41399 -22.87967 -21.49539 -21.36582 -20.61399 -19.45044 -18.18251 -17.70894 -16.99306 -16.84628 -16.64032 -16.48553 -16.04029 -15.90063 -15.70724 -15.56071 -15.21568 -15.11934 -14.64982 -14.30204 -14.17134 -14.02952 -13.83004 -13.71870 -13.58052 -13.45797 -13.09114 -13.00154 -12.83828 -12.81414 -12.65156 -12.56792 -12.52628 -12.07399 -12.04013 -11.95640 -11.81973 -11.65889 -11.59074 -11.55954 -10.95878 -10.72795 -10.01603 -9.78175 -9.57480 -9.26631 -9.02265 -7.93462 -5.22110 0.47699 0.54054 1.48127 1.48874 1.58571 1.74150 2.08848 2.58054 2.88005 3.07039 3.40720 3.78462 3.92065 3.94738 4.00080 4.03799 4.10112 4.13212 4.21641 4.27150 4.33527 4.35508 4.38066 4.40222 4.57967 4.58799 4.62993 4.68876 4.70389 4.72784 4.74063 4.90362 4.98638 4.99411 5.05961 5.06225 5.15054 5.22166 5.23034 5.27906 5.30929 5.51894 5.61961 5.63051 5.65745 5.67380 5.77028 5.93637 6.09560 6.17557 6.28921 6.69480 7.35296 7.39790 8.10402 8.32999 9.30360 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.034168 B = 0.001627 C = 0.001620 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 819.292415 B =17201.866169 C =17282.622609 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C 0.165 3.835 3 H 0.046 0.954 4 N -0.735 5.735 5 C -0.237 4.237 6 H 0.078 0.922 7 C -0.076 4.076 8 N -0.970 5.970 9 Si 0.971 3.029 10 H -0.265 1.265 11 H -0.297 1.297 12 H -0.294 1.294 13 C 0.153 3.847 14 H 0.053 0.947 15 C -0.148 4.148 16 N -0.709 5.709 17 C 0.507 3.493 18 O -0.569 6.569 19 C 0.043 3.957 20 N -0.543 5.543 21 C 0.020 3.980 22 C 0.069 3.931 23 C -0.073 4.073 24 C -0.088 4.088 25 C -0.129 4.129 26 C -0.128 4.128 27 C -0.134 4.134 28 C -0.127 4.127 29 C -0.128 4.128 30 H 0.050 0.950 31 H 0.079 0.921 32 H 0.041 0.959 33 H 0.376 0.624 34 H 0.250 0.750 35 H 0.073 0.927 36 H 0.048 0.952 37 H 0.049 0.951 38 H 0.413 0.587 39 H 0.086 0.914 40 H 0.129 0.871 41 H 0.032 0.968 42 H 0.076 0.924 43 H 0.059 0.941 44 H 0.043 0.957 45 H 0.084 0.916 46 H 0.073 0.927 47 H 0.073 0.927 48 H 0.128 0.872 49 H 0.137 0.863 50 H 0.138 0.862 51 H 0.137 0.863 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.408 9.027 31.952 34.251 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C 0.056 3.944 3 H 0.064 0.936 4 N -0.377 5.377 5 C -0.369 4.369 6 H 0.096 0.904 7 C -0.268 4.268 8 N -0.621 5.621 9 Si 0.801 3.199 10 H -0.189 1.189 11 H -0.225 1.225 12 H -0.221 1.221 13 C 0.047 3.953 14 H 0.071 0.929 15 C -0.207 4.207 16 N -0.364 5.364 17 C 0.294 3.706 18 O -0.447 6.447 19 C -0.088 4.088 20 N -0.267 5.267 21 C -0.128 4.128 22 C -0.058 4.058 23 C -0.111 4.111 24 C -0.089 4.089 25 C -0.147 4.147 26 C -0.146 4.146 27 C -0.152 4.152 28 C -0.145 4.145 29 C -0.146 4.146 30 H 0.069 0.931 31 H 0.097 0.903 32 H 0.060 0.940 33 H 0.210 0.790 34 H 0.059 0.941 35 H 0.091 0.909 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.252 0.748 39 H 0.104 0.896 40 H 0.147 0.853 41 H 0.050 0.950 42 H 0.095 0.905 43 H 0.077 0.923 44 H 0.061 0.939 45 H 0.103 0.897 46 H 0.092 0.908 47 H 0.091 0.909 48 H 0.146 0.854 49 H 0.154 0.846 50 H 0.155 0.845 51 H 0.154 0.846 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -7.565 8.269 31.910 33.821 hybrid contribution 0.088 0.723 -1.410 1.587 sum -7.477 8.992 30.500 32.665 Atomic orbital electron populations 1.22351 0.96497 1.01601 1.01237 1.20547 0.93947 0.94808 0.85101 0.93578 1.42673 1.78624 1.10528 1.05873 1.19663 1.34812 0.94301 0.88100 0.90385 1.25538 1.02985 0.96870 1.01453 1.69829 1.52677 1.10262 1.29329 0.85098 0.76609 0.78274 0.79917 1.18880 1.22461 1.22144 1.20796 0.97133 0.92948 0.84436 0.92904 1.22012 1.02223 0.95595 1.00826 1.46004 1.26377 1.56803 1.07219 1.21177 0.84564 0.79748 0.85075 1.90672 1.24324 1.43913 1.85771 1.22021 0.97960 1.00792 0.88044 1.61574 1.04304 1.59280 1.01536 1.22511 0.91645 0.95514 1.03151 1.22087 0.97871 0.98595 0.87225 1.20528 0.98453 1.01954 0.90119 1.19935 0.97436 0.94927 0.96561 1.21277 1.00603 0.96378 0.96431 1.21431 0.96862 1.00438 0.95844 1.21462 0.98403 0.94602 1.00763 1.21439 1.00056 0.97205 0.95837 1.21302 0.96896 1.00083 0.96308 0.93056 0.90256 0.93953 0.79037 0.94125 0.90858 0.93278 0.93208 0.74841 0.89625 0.85312 0.94977 0.90508 0.92263 0.93892 0.89738 0.90789 0.90854 0.85408 0.84555 0.84460 0.84551 0.85340 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -4.80 9.01 71.98 0.65 -4.15 16 2 C 0.16 6.16 2.93 44.99 0.13 6.29 16 3 H 0.05 1.76 8.08 -2.39 -0.02 1.74 16 4 N -0.73 -36.25 5.03 -322.94 -1.63 -37.87 16 5 C -0.24 -12.94 9.93 84.03 0.83 -12.10 16 6 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 7 C -0.08 -4.36 5.50 84.86 0.47 -3.89 16 8 N -0.97 -59.55 13.06 21.65 0.28 -59.27 16 9 Si 0.97 46.03 29.55 68.60 2.03 48.06 16 10 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 11 H -0.30 -14.24 7.11 99.48 0.71 -13.53 16 12 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 13 C 0.15 5.19 2.62 44.99 0.12 5.31 16 14 H 0.05 2.17 7.58 -2.39 -0.02 2.15 16 15 C -0.15 -5.06 9.00 71.98 0.65 -4.41 16 16 N -0.71 -17.67 4.99 -442.54 -2.21 -19.88 16 17 C 0.51 13.45 7.52 87.66 0.66 14.11 16 18 O -0.57 -20.61 13.97 -3.05 -0.04 -20.66 16 19 C 0.04 0.74 5.45 85.56 0.47 1.20 16 20 N -0.54 -10.66 4.50 -927.06 -4.17 -14.83 16 21 C 0.02 0.41 9.01 127.69 1.15 1.56 16 22 C 0.07 0.99 4.94 86.30 0.43 1.42 16 23 C -0.07 -1.06 5.28 29.85 0.16 -0.90 16 24 C -0.09 -1.26 5.13 -19.86 -0.10 -1.36 16 25 C -0.13 -1.72 9.70 22.27 0.22 -1.50 16 26 C -0.13 -1.52 10.05 22.27 0.22 -1.30 16 27 C -0.13 -1.54 10.05 22.27 0.22 -1.31 16 28 C -0.13 -1.54 10.05 22.27 0.22 -1.32 16 29 C -0.13 -1.75 9.70 22.27 0.22 -1.53 16 30 H 0.05 1.60 6.57 -2.39 -0.02 1.59 16 31 H 0.08 1.67 6.29 -2.39 -0.02 1.65 16 32 H 0.04 1.43 8.14 -2.39 -0.02 1.41 16 33 H 0.38 20.06 5.77 -92.70 -0.54 19.52 16 34 H 0.25 14.91 8.31 -92.71 -0.77 14.14 16 35 H 0.07 2.21 6.57 -2.39 -0.02 2.19 16 36 H 0.05 1.94 6.29 -2.38 -0.02 1.93 16 37 H 0.05 1.69 8.14 -2.39 -0.02 1.67 16 38 H 0.41 7.41 6.58 -92.71 -0.61 6.80 16 39 H 0.09 1.13 8.12 -2.39 -0.02 1.11 16 40 H 0.13 1.57 7.93 -2.39 -0.02 1.55 16 41 H 0.03 0.57 8.14 -2.38 -0.02 0.55 16 42 H 0.08 1.43 6.30 -2.39 -0.02 1.41 16 43 H 0.06 1.65 5.88 -2.39 -0.01 1.64 16 44 H 0.04 0.56 8.12 -2.39 -0.02 0.55 16 45 H 0.08 1.08 7.93 -2.39 -0.02 1.06 16 46 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 47 H 0.07 1.06 6.41 -2.39 -0.02 1.05 16 48 H 0.13 1.40 8.06 -2.91 -0.02 1.38 16 49 H 0.14 1.08 8.06 -2.91 -0.02 1.06 16 50 H 0.14 0.98 8.06 -2.91 -0.02 0.96 16 51 H 0.14 1.12 8.06 -2.91 -0.02 1.09 16 52 H 0.13 1.51 8.06 -2.91 -0.02 1.48 16 Total: -1.00 -71.89 411.64 0.74 -71.15 By element: Atomic # 1 Polarization: 37.42 SS G_CDS: -0.23 Total: 37.19 kcal Atomic # 6 Polarization: -10.60 SS G_CDS: 6.71 Total: -3.89 kcal Atomic # 7 Polarization: -124.13 SS G_CDS: -7.72 Total: -131.85 kcal Atomic # 8 Polarization: -20.61 SS G_CDS: -0.04 Total: -20.66 kcal Atomic # 14 Polarization: 46.03 SS G_CDS: 2.03 Total: 48.06 kcal Total: -71.89 0.74 -71.15 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001485193519.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.851 kcal (2) G-P(sol) polarization free energy of solvation -71.887 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.036 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.739 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.148 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.296 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.95 seconds