Wall clock time and date at job start Tue Mar 31 2020 17:58:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 N 1.46496 * 109.47085 * 2 1 4 4 C 1.36444 * 124.85291 * 264.99790 * 3 2 1 5 5 C 1.34490 * 108.85911 * 180.02562 * 4 3 2 6 6 C 1.46686 * 106.32947 * 359.75599 * 5 4 3 7 7 C 1.47266 * 126.94411 * 180.29862 * 6 5 4 8 8 O 1.21621 * 120.00216 * 153.81989 * 7 6 5 9 9 N 1.34780 * 119.99580 * 333.82292 * 7 6 5 10 10 C 1.46924 * 120.63258 * 359.80433 * 9 7 6 11 11 C 1.52757 * 109.01195 * 233.58790 * 10 9 7 12 12 C 1.53038 * 109.38170 * 305.59010 * 11 10 9 13 13 C 1.53045 * 109.54059 * 61.23636 * 12 11 10 14 14 C 1.46924 * 120.63048 * 180.08940 * 9 7 6 15 15 H 1.08998 * 109.58890 * 246.15717 * 14 9 7 16 16 C 1.53008 * 109.58390 * 6.57976 * 14 9 7 17 17 H 1.09001 * 109.47261 * 53.35883 * 16 14 9 18 18 C 1.53002 * 109.46792 * 173.36251 * 16 14 9 19 19 N 1.46500 * 109.46921 * 293.35975 * 16 14 9 20 20 C 1.36938 * 120.00019 * 167.08915 * 19 16 14 21 21 H 1.08002 * 119.99601 * 0.02562 * 20 19 16 22 22 C 1.38813 * 120.00109 * 179.97438 * 20 19 16 23 23 N 1.31617 * 119.99919 * 359.97438 * 22 20 19 24 24 Si 1.86799 * 119.99861 * 180.02562 * 22 20 19 25 25 H 1.48497 * 109.47291 * 89.99743 * 24 22 20 26 26 H 1.48499 * 109.46880 * 209.99981 * 24 22 20 27 27 H 1.48507 * 109.47179 * 329.99798 * 24 22 20 28 28 C 1.34662 * 124.85042 * 85.00043 * 3 2 1 29 29 C 1.50698 * 125.80096 * 0.02562 * 28 3 2 30 30 H 1.09002 * 109.46922 * 179.97438 * 1 2 3 31 31 H 1.09000 * 109.46882 * 299.99950 * 1 2 3 32 32 H 1.09000 * 109.46532 * 60.00312 * 1 2 3 33 33 H 1.09000 * 109.46882 * 240.00050 * 2 1 3 34 34 H 1.08998 * 109.46762 * 120.00177 * 2 1 3 35 35 H 1.08003 * 125.57078 * 359.97438 * 4 3 2 36 36 H 1.08000 * 126.83280 * 180.02562 * 5 4 3 37 37 H 1.09006 * 109.58861 * 353.42356 * 10 9 7 38 38 H 1.08998 * 109.58460 * 113.84745 * 10 9 7 39 39 H 1.09000 * 109.56469 * 185.55269 * 11 10 9 40 40 H 1.09002 * 109.36259 * 65.49905 * 11 10 9 41 41 H 1.09002 * 109.46102 * 301.21398 * 12 11 10 42 42 H 1.09002 * 109.45143 * 181.25310 * 12 11 10 43 43 H 1.08993 * 109.49650 * 178.68150 * 13 12 11 44 44 H 1.09008 * 109.49260 * 58.58693 * 13 12 11 45 45 H 1.09004 * 109.46484 * 174.35405 * 18 16 14 46 46 H 1.08999 * 109.46903 * 294.34512 * 18 16 14 47 47 H 1.08997 * 109.47401 * 54.35356 * 18 16 14 48 48 H 0.96998 * 120.00151 * 347.09131 * 19 16 14 49 49 H 0.96998 * 119.99891 * 179.97438 * 23 22 20 50 50 H 1.08994 * 109.47252 * 90.00062 * 29 28 3 51 51 H 1.09008 * 109.47159 * 329.99906 * 29 28 3 52 52 H 1.09000 * 109.47041 * 210.00517 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3703 2.0838 -1.1154 5 6 2.7713 3.3133 -0.7462 6 6 2.6483 3.3659 0.7145 7 6 2.9630 4.5085 1.5887 8 8 2.4050 4.6239 2.6632 9 7 3.8692 5.4264 1.1979 10 6 4.5546 5.2983 -0.0954 11 6 6.0637 5.3609 0.1328 12 6 6.4083 6.6374 0.9035 13 6 5.7124 6.6161 2.2664 14 6 4.1952 6.5707 2.0598 15 1 3.8635 7.4932 1.5834 16 6 3.4980 6.4091 3.4122 17 1 3.7454 5.4351 3.8345 18 6 3.9682 7.5117 4.3632 19 7 2.0479 6.5079 3.2289 20 6 1.2030 6.1351 4.2401 21 1 1.6058 5.7687 5.1728 22 6 -0.1710 6.2292 4.0666 23 7 -0.6617 6.6771 2.9305 24 14 -1.3235 5.7213 5.4462 25 1 -1.6029 6.8931 6.3145 26 1 -2.5958 5.2187 4.8685 27 1 -0.6879 4.6482 6.2524 28 6 2.1841 2.1388 1.1009 29 6 1.9013 1.7092 2.5174 30 1 -0.3633 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3632 0.5138 -0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5139 0.8900 35 1 2.3337 1.7129 -2.1291 36 1 3.1116 4.1057 -1.3963 37 1 4.2950 4.3439 -0.5536 38 1 4.2528 6.1150 -0.7512 39 1 6.5783 5.3659 -0.8281 40 1 6.3783 4.4914 0.7100 41 1 6.0714 7.5057 0.3372 42 1 7.4873 6.6943 1.0476 43 1 5.9769 7.5144 2.8240 44 1 6.0303 5.7347 2.8234 45 1 3.3991 7.4578 5.2913 46 1 5.0282 7.3779 4.5788 47 1 3.8120 8.4845 3.8972 48 1 1.6862 6.8373 2.3914 49 1 -1.6219 6.7425 2.8091 50 1 2.7984 1.2647 2.9482 51 1 1.0949 0.9757 2.5206 52 1 1.6058 2.5764 3.1080 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490305123.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:07 Heat of formation + Delta-G solvation = 80.554453 kcal Electronic energy + Delta-G solvation = -31489.613961 eV Core-core repulsion = 27685.630997 eV Total energy + Delta-G solvation = -3803.982963 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.14810 -39.54420 -36.48742 -35.19469 -33.86498 -32.28074 -32.05235 -31.15175 -29.78555 -29.10100 -27.63209 -26.22705 -24.73215 -24.10142 -23.60798 -22.44164 -21.44273 -20.42079 -19.81174 -19.16213 -17.86939 -16.90665 -16.38576 -15.59137 -15.24785 -15.05020 -14.69681 -14.47418 -14.30428 -13.97553 -13.64985 -13.52277 -13.35788 -13.04681 -12.88203 -12.83783 -12.59439 -12.37670 -12.27559 -12.14304 -12.00272 -11.78994 -11.74567 -11.63133 -11.39051 -11.18574 -11.06080 -10.96426 -10.68046 -10.62557 -10.57185 -10.41977 -10.12511 -9.97687 -9.52710 -9.30985 -8.58096 -8.19666 -7.95923 -7.70653 -7.63814 -6.17131 -5.37022 -2.54046 2.38203 2.80130 3.03499 3.62512 3.67229 3.69021 3.86426 4.39517 4.57707 4.88025 4.89006 4.97197 5.04528 5.08496 5.12918 5.14613 5.25136 5.42053 5.46984 5.48528 5.58620 5.67201 5.69078 5.78051 5.84888 5.88561 5.93308 5.94430 6.00539 6.05422 6.06881 6.09880 6.20409 6.27855 6.30008 6.31415 6.33143 6.38848 6.53077 6.58884 6.64925 6.69492 6.95427 7.11562 7.19347 7.26067 7.43865 7.58089 7.62007 8.03564 8.45108 8.79682 9.51055 9.91414 10.50337 10.85374 11.87508 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007854 B = 0.006531 C = 0.003904 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3564.042840 B = 4286.200344 C = 7170.224411 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.100 3.900 3 N -0.446 5.446 4 C -0.025 4.025 5 C -0.184 4.184 6 C -0.202 4.202 7 C 0.533 3.467 8 O -0.431 6.431 9 N -0.610 5.610 10 C 0.087 3.913 11 C -0.133 4.133 12 C -0.118 4.118 13 C -0.127 4.127 14 C 0.150 3.850 15 H 0.060 0.940 16 C 0.185 3.815 17 H 0.054 0.946 18 C -0.168 4.168 19 N -0.679 5.679 20 C -0.176 4.176 21 H 0.061 0.939 22 C -0.027 4.027 23 N -0.942 5.942 24 Si 0.893 3.107 25 H -0.298 1.298 26 H -0.298 1.298 27 H -0.287 1.287 28 C 0.089 3.911 29 C -0.097 4.097 30 H 0.071 0.929 31 H 0.067 0.933 32 H 0.063 0.937 33 H 0.087 0.913 34 H 0.085 0.915 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.111 0.889 38 H 0.052 0.948 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.060 0.940 42 H 0.056 0.944 43 H 0.071 0.929 44 H 0.063 0.937 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.042 0.958 48 H 0.378 0.622 49 H 0.246 0.754 50 H 0.064 0.936 51 H 0.056 0.944 52 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.783 -10.915 -10.262 19.694 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.230 4.230 2 C -0.022 4.022 3 N -0.124 5.124 4 C -0.152 4.152 5 C -0.209 4.209 6 C -0.211 4.211 7 C 0.319 3.681 8 O -0.298 6.298 9 N -0.347 5.347 10 C -0.036 4.036 11 C -0.171 4.171 12 C -0.156 4.156 13 C -0.166 4.166 14 C 0.046 3.954 15 H 0.078 0.922 16 C 0.075 3.925 17 H 0.072 0.928 18 C -0.228 4.228 19 N -0.320 5.320 20 C -0.309 4.309 21 H 0.079 0.921 22 C -0.220 4.220 23 N -0.594 5.594 24 Si 0.727 3.273 25 H -0.226 1.226 26 H -0.225 1.225 27 H -0.213 1.213 28 C -0.025 4.025 29 C -0.154 4.154 30 H 0.089 0.911 31 H 0.086 0.914 32 H 0.082 0.918 33 H 0.105 0.895 34 H 0.104 0.896 35 H 0.175 0.825 36 H 0.167 0.833 37 H 0.129 0.871 38 H 0.070 0.930 39 H 0.082 0.918 40 H 0.080 0.920 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.090 0.910 44 H 0.082 0.918 45 H 0.075 0.925 46 H 0.054 0.946 47 H 0.061 0.939 48 H 0.211 0.789 49 H 0.056 0.944 50 H 0.083 0.917 51 H 0.075 0.925 52 H 0.130 0.870 Dipole moment (debyes) X Y Z Total from point charges 12.229 -11.291 -9.480 19.155 hybrid contribution -0.878 -0.146 0.028 0.890 sum 11.351 -11.436 -9.452 18.681 Atomic orbital electron populations 1.22194 0.94459 1.02623 1.03726 1.21768 0.95564 0.81024 1.03804 1.43619 1.51189 1.11615 1.05950 1.21562 1.08840 0.93870 0.90898 1.22211 1.07601 0.96822 0.94225 1.20442 1.12680 0.94888 0.93126 1.17492 0.79996 0.82504 0.88066 1.91363 1.47812 1.69944 1.20716 1.47566 1.42794 1.25540 1.18846 1.22212 0.91275 1.03675 0.86465 1.21843 0.96927 0.98354 1.00016 1.21511 0.99503 0.97872 0.96668 1.21989 0.95596 1.02244 0.96782 1.21400 0.93238 0.88345 0.92425 0.92186 1.20348 0.85834 0.95983 0.90299 0.92833 1.22539 0.98389 1.00297 1.01598 1.42301 0.98487 1.74488 1.16685 1.18979 0.87216 1.31448 0.93219 0.92064 1.24505 0.96449 1.04318 0.96752 1.69646 1.10774 1.54975 1.24000 0.86338 0.81189 0.77902 0.81847 1.22616 1.22486 1.21329 1.20172 1.02241 0.91017 0.89063 1.20574 1.00710 1.03857 0.90238 0.91052 0.91411 0.91832 0.89492 0.89611 0.82469 0.83345 0.87128 0.92965 0.91785 0.91970 0.92173 0.92522 0.91034 0.91837 0.92539 0.94591 0.93911 0.78853 0.94449 0.91687 0.92481 0.86991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.65 10.24 37.16 0.38 -1.27 16 2 C 0.10 0.95 6.21 -4.04 -0.03 0.92 16 3 N -0.45 -5.99 2.68 -112.52 -0.30 -6.29 16 4 C -0.03 -0.33 11.33 -16.82 -0.19 -0.52 16 5 C -0.18 -2.76 8.72 -37.50 -0.33 -3.08 16 6 C -0.20 -3.72 5.85 -103.35 -0.60 -4.32 16 7 C 0.53 11.13 7.27 -12.59 -0.09 11.04 16 8 O -0.43 -10.62 7.73 5.26 0.04 -10.58 16 9 N -0.61 -10.87 2.98 -166.80 -0.50 -11.36 16 10 C 0.09 1.20 5.47 -3.94 -0.02 1.18 16 11 C -0.13 -1.55 6.06 -26.84 -0.16 -1.71 16 12 C -0.12 -1.39 5.89 -26.69 -0.16 -1.55 16 13 C -0.13 -1.80 4.66 -26.61 -0.12 -1.92 16 14 C 0.15 2.68 2.56 -67.60 -0.17 2.51 16 15 H 0.06 1.13 8.14 -51.93 -0.42 0.71 16 16 C 0.19 3.96 1.78 -67.93 -0.12 3.84 16 17 H 0.05 1.26 6.71 -51.93 -0.35 0.91 16 18 C -0.17 -3.24 8.68 37.16 0.32 -2.91 16 19 N -0.68 -17.93 2.87 -53.42 -0.15 -18.08 16 20 C -0.18 -5.15 8.01 -15.06 -0.12 -5.27 16 21 H 0.06 1.79 7.83 -52.49 -0.41 1.38 16 22 C -0.03 -0.82 5.50 -17.43 -0.10 -0.92 16 23 N -0.94 -30.31 13.06 55.49 0.72 -29.58 16 24 Si 0.89 24.06 29.55 -169.99 -5.02 19.04 16 25 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 26 H -0.30 -8.13 7.11 56.52 0.40 -7.73 16 27 H -0.29 -7.55 7.11 56.52 0.40 -7.15 16 28 C 0.09 1.51 6.88 -81.88 -0.56 0.94 16 29 C -0.10 -1.57 9.59 36.00 0.35 -1.22 16 30 H 0.07 0.51 8.14 -51.93 -0.42 0.08 16 31 H 0.07 0.80 7.52 -51.93 -0.39 0.41 16 32 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 33 H 0.09 0.61 8.11 -51.93 -0.42 0.19 16 34 H 0.09 0.73 7.74 -51.93 -0.40 0.33 16 35 H 0.16 1.47 8.06 -52.48 -0.42 1.05 16 36 H 0.15 1.94 6.08 -52.49 -0.32 1.63 16 37 H 0.11 1.47 3.30 -51.93 -0.17 1.30 16 38 H 0.05 0.70 8.14 -51.93 -0.42 0.28 16 39 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 40 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 43 H 0.07 0.95 6.83 -51.93 -0.35 0.59 16 44 H 0.06 0.93 8.14 -51.92 -0.42 0.51 16 45 H 0.06 1.19 7.84 -51.93 -0.41 0.78 16 46 H 0.04 0.58 6.82 -51.93 -0.35 0.22 16 47 H 0.04 0.81 8.14 -51.93 -0.42 0.38 16 48 H 0.38 10.94 7.62 -40.82 -0.31 10.62 16 49 H 0.25 7.76 8.31 -40.82 -0.34 7.43 16 50 H 0.06 0.93 8.14 -51.93 -0.42 0.51 16 51 H 0.06 0.79 7.06 -51.92 -0.37 0.43 16 52 H 0.11 2.29 6.35 -51.93 -0.33 1.96 16 LS Contribution 390.62 15.07 5.89 5.89 Total: -1.00 -34.95 390.62 -9.85 -44.80 By element: Atomic # 1 Polarization: 19.23 SS G_CDS: -8.80 Total: 10.43 kcal Atomic # 6 Polarization: -2.53 SS G_CDS: -1.73 Total: -4.26 kcal Atomic # 7 Polarization: -65.09 SS G_CDS: -0.23 Total: -65.32 kcal Atomic # 8 Polarization: -10.62 SS G_CDS: 0.04 Total: -10.58 kcal Atomic # 14 Polarization: 24.06 SS G_CDS: -5.02 Total: 19.04 kcal Total LS contribution 5.89 Total: 5.89 kcal Total: -34.95 -9.85 -44.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490305123.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 125.352 kcal (2) G-P(sol) polarization free energy of solvation -34.948 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.403 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.849 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.797 kcal (6) G-S(sol) free energy of system = (1) + (5) 80.554 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds