Wall clock time and date at job start Tue Mar 31 2020 17:58:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 N 1.46498 * 109.46690 * 2 1 4 4 C 1.36447 * 124.85161 * 264.97398 * 3 2 1 5 5 C 1.34489 * 108.86089 * 179.73311 * 4 3 2 6 6 C 1.46694 * 106.32787 * 0.43650 * 5 4 3 7 7 C 1.47265 * 126.93712 * 179.82954 * 6 5 4 8 8 O 1.21634 * 119.99417 * 148.97858 * 7 6 5 9 9 N 1.34774 * 120.00247 * 328.97307 * 7 6 5 10 10 C 1.46922 * 120.62808 * 5.82731 * 9 7 6 11 11 C 1.53200 * 108.77406 * 233.62586 * 10 9 7 12 12 C 1.53036 * 109.31210 * 305.36977 * 11 10 9 13 13 C 1.53077 * 109.66259 * 61.29617 * 12 11 10 14 14 C 1.46924 * 120.63072 * 185.84497 * 9 7 6 15 15 H 1.09001 * 109.59023 * 246.30496 * 14 9 7 16 16 C 1.53001 * 109.58331 * 6.58678 * 14 9 7 17 17 H 1.09001 * 109.47141 * 301.84084 * 16 14 9 18 18 C 1.53003 * 109.46770 * 181.84707 * 16 14 9 19 19 N 1.46498 * 109.47651 * 61.84542 * 16 14 9 20 20 C 1.36936 * 120.00292 * 204.99654 * 19 16 14 21 21 H 1.08001 * 119.99573 * 0.02562 * 20 19 16 22 22 C 1.38806 * 119.99920 * 180.27351 * 20 19 16 23 23 N 1.31615 * 120.00291 * 359.72464 * 22 20 19 24 24 Si 1.86800 * 119.99815 * 179.72828 * 22 20 19 25 25 H 1.48500 * 109.47226 * 90.00219 * 24 22 20 26 26 H 1.48501 * 109.47115 * 209.99811 * 24 22 20 27 27 H 1.48504 * 109.47247 * 329.99917 * 24 22 20 28 28 C 1.34658 * 124.85412 * 85.00209 * 3 2 1 29 29 C 1.50701 * 125.80200 * 359.95342 * 28 3 2 30 30 H 1.08990 * 109.47317 * 60.00299 * 1 2 3 31 31 H 1.09003 * 109.46623 * 180.02562 * 1 2 3 32 32 H 1.09001 * 109.47450 * 299.99632 * 1 2 3 33 33 H 1.08995 * 109.47031 * 240.00279 * 2 1 3 34 34 H 1.08997 * 109.47367 * 119.99278 * 2 1 3 35 35 H 1.08003 * 125.57145 * 0.02562 * 4 3 2 36 36 H 1.07997 * 126.83519 * 180.26132 * 5 4 3 37 37 H 1.09003 * 109.58901 * 353.41341 * 10 9 7 38 38 H 1.09001 * 109.58888 * 113.70349 * 10 9 7 39 39 H 1.09002 * 109.49143 * 65.31600 * 11 10 9 40 40 H 1.09002 * 109.49826 * 185.38150 * 11 10 9 41 41 H 1.09003 * 109.45842 * 181.38468 * 12 11 10 42 42 H 1.09006 * 109.46228 * 301.35316 * 12 11 10 43 43 H 1.08995 * 109.62434 * 178.82943 * 13 12 11 44 44 H 1.09002 * 109.38418 * 58.72374 * 13 12 11 45 45 H 1.09005 * 109.47307 * 174.90994 * 18 16 14 46 46 H 1.09001 * 109.47277 * 294.90409 * 18 16 14 47 47 H 1.08997 * 109.47260 * 54.91063 * 18 16 14 48 48 H 0.97001 * 119.99855 * 24.99488 * 19 16 14 49 49 H 0.97004 * 120.00229 * 179.97438 * 23 22 20 50 50 H 1.08999 * 109.47246 * 270.00194 * 29 28 3 51 51 H 1.08996 * 109.46544 * 30.00205 * 29 28 3 52 52 H 1.08992 * 109.47264 * 150.00403 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0182 1.3812 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7652 3.3154 -0.7469 6 6 2.6533 3.3642 0.7150 7 6 2.9754 4.5043 1.5896 8 8 2.3631 4.6659 2.6282 9 7 3.9485 5.3685 1.2395 10 6 4.6094 5.2617 -0.0683 11 6 6.1242 5.1903 0.1491 12 6 6.5729 6.3918 0.9840 13 6 5.8863 6.3540 2.3516 14 6 4.3688 6.4350 2.1585 15 1 4.1053 7.4053 1.7373 16 6 3.6697 6.2546 3.5075 17 1 2.5896 6.2698 3.3619 18 6 4.0737 7.3924 4.4473 19 7 4.0653 4.9722 4.0949 20 6 3.2417 4.3471 4.9927 21 1 2.3002 4.7994 5.2674 22 6 3.6191 3.1349 5.5536 23 7 4.7662 2.5834 5.2184 24 14 2.4989 2.2860 6.7840 25 1 1.5690 1.3797 6.0636 26 1 3.3192 1.4970 7.7379 27 1 1.7182 3.3063 7.5287 28 6 2.1839 2.1389 1.1008 29 6 1.8998 1.7098 2.5173 30 1 -0.3633 0.5137 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3634 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8934 -0.5137 0.8900 35 1 2.3336 1.7129 -2.1291 36 1 3.1008 4.1095 -1.3974 37 1 4.2703 4.3591 -0.5766 38 1 4.3659 6.1352 -0.6732 39 1 6.3731 4.2685 0.6751 40 1 6.6315 5.2071 -0.8155 41 1 7.6539 6.3565 1.1194 42 1 6.3014 7.3135 0.4692 43 1 6.2221 7.1985 2.9533 44 1 6.1394 5.4224 2.8579 45 1 3.5076 7.3151 5.3757 46 1 5.1395 7.3229 4.6649 47 1 3.8616 8.3496 3.9711 48 1 4.9108 4.5658 3.8479 49 1 5.0302 1.7364 5.6107 50 1 0.8664 1.9482 2.7688 51 1 2.0578 0.6354 2.6099 52 1 2.5697 2.2357 3.1974 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001490305125.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:11 Heat of formation + Delta-G solvation = 70.005805 kcal Electronic energy + Delta-G solvation = -31928.089088 eV Core-core repulsion = 28123.648701 eV Total energy + Delta-G solvation = -3804.440387 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.91 seconds Orbital eigenvalues (eV) -41.11706 -39.53683 -36.44966 -35.15679 -33.83559 -32.14729 -32.06961 -31.01227 -29.61623 -28.98580 -27.86911 -26.09952 -24.64979 -23.90618 -23.61233 -22.72935 -21.49420 -20.20942 -20.07021 -18.70508 -17.71858 -16.87647 -16.58920 -15.54679 -15.28578 -15.04223 -14.44280 -14.37053 -14.20090 -14.00269 -13.80911 -13.47455 -13.41755 -12.99732 -12.88275 -12.67809 -12.35471 -12.27271 -12.22562 -12.06838 -11.87834 -11.77139 -11.60089 -11.43822 -11.29206 -11.20874 -10.97713 -10.94392 -10.60056 -10.51446 -10.48928 -10.35735 -10.03510 -9.98198 -9.61571 -9.25709 -8.64393 -8.18442 -7.87197 -7.72734 -7.56629 -6.47570 -5.41952 -2.62960 2.47330 2.79316 3.07371 3.58016 3.64501 3.66360 3.81413 4.36873 4.64013 4.87119 4.91907 5.01533 5.14226 5.17897 5.25070 5.26795 5.33391 5.48626 5.52655 5.56232 5.72097 5.73514 5.75517 5.81636 5.87261 5.93274 5.94553 6.00100 6.02274 6.14258 6.18869 6.29304 6.31962 6.34924 6.37114 6.42858 6.50467 6.53243 6.61198 6.66958 6.76185 7.07032 7.07523 7.15503 7.22654 7.31400 7.52035 7.65402 7.66569 8.07983 8.41947 8.76549 9.43565 9.87575 10.46950 10.84257 11.81875 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008526 B = 0.006903 C = 0.004297 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3283.259057 B = 4055.197318 C = 6514.534500 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.098 3.902 3 N -0.446 5.446 4 C -0.027 4.027 5 C -0.186 4.186 6 C -0.218 4.218 7 C 0.581 3.419 8 O -0.471 6.471 9 N -0.607 5.607 10 C 0.085 3.915 11 C -0.134 4.134 12 C -0.116 4.116 13 C -0.131 4.131 14 C 0.149 3.851 15 H 0.056 0.944 16 C 0.167 3.833 17 H 0.087 0.913 18 C -0.169 4.169 19 N -0.704 5.704 20 C -0.164 4.164 21 H 0.064 0.936 22 C -0.031 4.031 23 N -0.946 5.946 24 Si 0.888 3.112 25 H -0.296 1.296 26 H -0.299 1.299 27 H -0.288 1.288 28 C 0.110 3.890 29 C -0.095 4.095 30 H 0.061 0.939 31 H 0.071 0.929 32 H 0.065 0.935 33 H 0.087 0.913 34 H 0.089 0.911 35 H 0.158 0.842 36 H 0.149 0.851 37 H 0.112 0.888 38 H 0.051 0.949 39 H 0.067 0.933 40 H 0.062 0.938 41 H 0.056 0.944 42 H 0.054 0.946 43 H 0.067 0.933 44 H 0.077 0.923 45 H 0.050 0.950 46 H 0.044 0.956 47 H 0.030 0.970 48 H 0.378 0.622 49 H 0.245 0.755 50 H 0.068 0.932 51 H 0.049 0.951 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.084 0.238 -16.567 16.699 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C -0.024 4.024 3 N -0.124 5.124 4 C -0.153 4.153 5 C -0.211 4.211 6 C -0.227 4.227 7 C 0.369 3.631 8 O -0.343 6.343 9 N -0.342 5.342 10 C -0.038 4.038 11 C -0.172 4.172 12 C -0.154 4.154 13 C -0.170 4.170 14 C 0.045 3.955 15 H 0.074 0.926 16 C 0.057 3.943 17 H 0.105 0.895 18 C -0.230 4.230 19 N -0.345 5.345 20 C -0.297 4.297 21 H 0.082 0.918 22 C -0.224 4.224 23 N -0.599 5.599 24 Si 0.722 3.278 25 H -0.224 1.224 26 H -0.226 1.226 27 H -0.214 1.214 28 C -0.005 4.005 29 C -0.152 4.152 30 H 0.080 0.920 31 H 0.090 0.910 32 H 0.084 0.916 33 H 0.105 0.895 34 H 0.107 0.893 35 H 0.175 0.825 36 H 0.166 0.834 37 H 0.130 0.870 38 H 0.069 0.931 39 H 0.086 0.914 40 H 0.080 0.920 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.086 0.914 44 H 0.096 0.904 45 H 0.069 0.931 46 H 0.063 0.937 47 H 0.049 0.951 48 H 0.213 0.787 49 H 0.055 0.945 50 H 0.087 0.913 51 H 0.068 0.932 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -2.721 -0.068 -15.878 16.109 hybrid contribution -0.038 -0.793 0.397 0.888 sum -2.759 -0.861 -15.480 15.748 Atomic orbital electron populations 1.22155 0.94563 1.02657 1.03305 1.21792 0.95425 0.81105 1.04105 1.43672 1.51074 1.11665 1.05988 1.21543 1.09235 0.93573 0.90955 1.22107 1.08023 0.96991 0.93942 1.20331 1.13834 0.95584 0.92941 1.17232 0.80373 0.81038 0.84464 1.90912 1.49761 1.71702 1.21966 1.47604 1.38017 1.32080 1.16543 1.22335 0.92328 1.03150 0.85976 1.21897 0.96265 0.99385 0.99662 1.21507 0.99559 0.97774 0.96550 1.21975 0.95319 1.03244 0.96422 1.21479 0.93841 0.88770 0.91446 0.92569 1.20744 0.99314 0.86638 0.87621 0.89518 1.22599 1.00996 0.98198 1.01177 1.42399 1.22028 1.19564 1.50527 1.19105 0.98447 1.00057 1.12047 0.91825 1.24476 0.97549 0.98516 1.01832 1.69650 1.22031 1.19651 1.48612 0.86422 0.79995 0.79708 0.81696 1.22417 1.22629 1.21375 1.20381 1.00280 0.90682 0.89158 1.20627 1.03986 1.00568 0.90049 0.92032 0.91029 0.91562 0.89469 0.89314 0.82495 0.83381 0.87033 0.93080 0.91387 0.91977 0.92542 0.92689 0.91412 0.90449 0.93074 0.93734 0.95051 0.78707 0.94463 0.91337 0.93240 0.85740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.60 10.24 37.16 0.38 -1.22 16 2 C 0.10 1.03 6.45 -4.04 -0.03 1.01 16 3 N -0.45 -6.37 2.68 -112.53 -0.30 -6.67 16 4 C -0.03 -0.35 11.32 -16.82 -0.19 -0.54 16 5 C -0.19 -2.72 8.77 -37.49 -0.33 -3.04 16 6 C -0.22 -4.08 5.83 -103.35 -0.60 -4.68 16 7 C 0.58 12.11 6.88 -12.59 -0.09 12.03 16 8 O -0.47 -11.36 8.97 5.25 0.05 -11.31 16 9 N -0.61 -10.91 2.97 -166.53 -0.49 -11.40 16 10 C 0.09 1.21 5.75 -3.71 -0.02 1.19 16 11 C -0.13 -1.81 6.09 -26.61 -0.16 -1.97 16 12 C -0.12 -1.58 5.88 -26.67 -0.16 -1.73 16 13 C -0.13 -2.18 4.82 -26.59 -0.13 -2.31 16 14 C 0.15 2.66 2.74 -67.60 -0.19 2.48 16 15 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 16 C 0.17 3.55 1.89 -67.93 -0.13 3.42 16 17 H 0.09 2.06 5.89 -52.16 -0.31 1.75 16 18 C -0.17 -3.27 9.06 37.16 0.34 -2.93 16 19 N -0.70 -17.76 3.47 -53.43 -0.19 -17.95 16 20 C -0.16 -4.61 7.90 -15.06 -0.12 -4.73 16 21 H 0.06 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.03 -0.90 4.78 -17.43 -0.08 -0.99 16 23 N -0.95 -28.62 13.06 55.49 0.72 -27.90 16 24 Si 0.89 23.22 29.55 -169.99 -5.02 18.20 16 25 H -0.30 -7.61 7.11 56.52 0.40 -7.21 16 26 H -0.30 -7.98 7.11 56.52 0.40 -7.58 16 27 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 28 C 0.11 2.00 6.88 -81.88 -0.56 1.44 16 29 C -0.10 -1.90 9.42 36.01 0.34 -1.56 16 30 H 0.06 0.57 8.14 -51.93 -0.42 0.15 16 31 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 32 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 33 H 0.09 0.70 8.11 -51.93 -0.42 0.28 16 34 H 0.09 0.97 7.05 -51.93 -0.37 0.60 16 35 H 0.16 1.46 8.06 -52.48 -0.42 1.03 16 36 H 0.15 1.80 6.16 -52.49 -0.32 1.47 16 37 H 0.11 1.54 3.05 -51.93 -0.16 1.38 16 38 H 0.05 0.64 8.14 -51.93 -0.42 0.21 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 42 H 0.05 0.67 8.14 -51.93 -0.42 0.25 16 43 H 0.07 1.07 6.92 -51.93 -0.36 0.71 16 44 H 0.08 1.56 6.23 -51.93 -0.32 1.23 16 45 H 0.05 1.06 8.14 -51.93 -0.42 0.63 16 46 H 0.04 0.85 6.90 -51.93 -0.36 0.49 16 47 H 0.03 0.51 8.14 -51.93 -0.42 0.09 16 48 H 0.38 10.24 5.86 -40.82 -0.24 10.00 16 49 H 0.25 7.35 8.31 -40.82 -0.34 7.02 16 50 H 0.07 1.33 8.14 -51.93 -0.42 0.91 16 51 H 0.05 0.88 7.02 -51.93 -0.36 0.51 16 52 H 0.12 3.13 6.45 -51.93 -0.34 2.79 16 LS Contribution 388.28 15.07 5.85 5.85 Total: -1.00 -32.39 388.28 -9.71 -42.10 By element: Atomic # 1 Polarization: 21.83 SS G_CDS: -8.60 Total: 13.23 kcal Atomic # 6 Polarization: -2.42 SS G_CDS: -1.73 Total: -4.15 kcal Atomic # 7 Polarization: -63.66 SS G_CDS: -0.26 Total: -63.92 kcal Atomic # 8 Polarization: -11.36 SS G_CDS: 0.05 Total: -11.31 kcal Atomic # 14 Polarization: 23.22 SS G_CDS: -5.02 Total: 18.20 kcal Total LS contribution 5.85 Total: 5.85 kcal Total: -32.39 -9.71 -42.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001490305125.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 112.104 kcal (2) G-P(sol) polarization free energy of solvation -32.392 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 79.713 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.707 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.099 kcal (6) G-S(sol) free energy of system = (1) + (5) 70.006 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds