Wall clock time and date at job start Tue Mar 31 2020 17:58:39 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47360 * 2 1 4 4 C 1.36446 * 124.85079 * 264.98646 * 3 2 1 5 5 C 1.34485 * 108.85648 * 180.02562 * 4 3 2 6 6 C 1.46689 * 106.33308 * 359.97438 * 5 4 3 7 7 C 1.47257 * 126.94308 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99892 * 140.63459 * 7 6 5 9 9 N 1.34779 * 120.00310 * 320.63114 * 7 6 5 10 10 C 1.46927 * 120.62715 * 354.37656 * 9 7 6 11 11 C 1.53191 * 108.77766 * 233.58497 * 10 9 7 12 12 C 1.53043 * 109.33728 * 305.35442 * 11 10 9 13 13 C 1.53103 * 109.50692 * 61.34674 * 12 11 10 14 14 H 1.09008 * 109.51476 * 58.62614 * 13 12 11 15 15 C 1.52995 * 109.48886 * 178.70022 * 13 12 11 16 16 C 1.52998 * 109.46985 * 184.85474 * 15 13 12 17 17 N 1.46501 * 109.47170 * 180.02562 * 16 15 13 18 18 C 1.36944 * 120.00323 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99292 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00672 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47034 * 60.00176 * 22 20 18 24 24 H 1.48499 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47485 * 299.99846 * 22 20 18 26 26 C 1.46921 * 120.63031 * 174.35464 * 9 7 6 27 27 C 1.34661 * 124.85050 * 85.31043 * 3 2 1 28 28 C 1.50698 * 125.80223 * 0.02562 * 27 3 2 29 29 H 1.08990 * 109.47372 * 59.99770 * 1 2 3 30 30 H 1.08995 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46608 * 299.99171 * 1 2 3 32 32 H 1.09007 * 109.46944 * 240.00431 * 2 1 3 33 33 H 1.08998 * 109.47614 * 120.00457 * 2 1 3 34 34 H 1.07998 * 125.57356 * 0.03100 * 4 3 2 35 35 H 1.07997 * 126.83797 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.58596 * 113.79819 * 10 9 7 37 37 H 1.09000 * 109.70627 * 353.44686 * 10 9 7 38 38 H 1.08998 * 109.49330 * 65.31843 * 11 10 9 39 39 H 1.08997 * 109.49876 * 185.38064 * 11 10 9 40 40 H 1.09004 * 109.45619 * 181.39753 * 12 11 10 41 41 H 1.08996 * 109.45621 * 301.35211 * 12 11 10 42 42 H 1.09001 * 109.47161 * 304.85151 * 15 13 12 43 43 H 1.08998 * 109.47254 * 64.85091 * 15 13 12 44 44 H 1.09002 * 109.47430 * 299.99872 * 16 15 13 45 45 H 1.08998 * 109.47437 * 59.99729 * 16 15 13 46 46 H 0.97002 * 119.99801 * 359.97438 * 17 16 15 47 47 H 0.96991 * 120.00227 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.58729 * 246.19638 * 26 9 7 49 49 H 1.08996 * 109.58881 * 6.63232 * 26 9 7 50 50 H 1.08998 * 109.47165 * 270.18955 * 28 27 3 51 51 H 1.09009 * 109.47295 * 30.18888 * 28 27 3 52 52 H 1.08994 * 109.47378 * 150.18665 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7716 3.3132 -0.7463 6 6 2.6534 3.3642 0.7150 7 6 2.9750 4.5043 1.5897 8 8 2.2646 4.7583 2.5436 9 7 4.0568 5.2663 1.3333 10 6 4.9924 4.9012 0.2608 11 6 6.4087 4.8408 0.8414 12 6 6.7308 6.1686 1.5308 13 6 5.7463 6.3999 2.6803 14 1 5.8138 5.5746 3.3892 15 6 6.0889 7.7116 3.3896 16 6 5.1830 7.8827 4.6107 17 7 5.5105 9.1389 5.2895 18 6 4.8255 9.5070 6.4167 19 1 4.0435 8.8712 6.8050 20 6 5.1363 10.6970 7.0602 21 7 6.0896 11.4715 6.5873 22 14 4.2013 11.1993 8.5974 23 1 4.3836 10.1654 9.6476 24 1 4.7204 12.5007 9.0893 25 1 2.7571 11.3309 8.2776 26 6 4.3224 6.4780 2.1205 27 6 2.1898 2.1368 1.1014 28 6 1.9142 1.7047 2.5186 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3334 1.7131 -2.1292 35 1 3.1127 4.1053 -1.3962 36 1 4.9531 5.6511 -0.5293 37 1 4.7225 3.9269 -0.1464 38 1 6.4700 4.0298 1.5671 39 1 7.1240 4.6649 0.0381 40 1 7.7473 6.1368 1.9232 41 1 6.6452 6.9820 0.8103 42 1 7.1305 7.6901 3.7101 43 1 5.9367 8.5456 2.7045 44 1 4.1414 7.9041 4.2903 45 1 5.3352 7.0486 5.2957 46 1 6.2132 9.7097 4.9410 47 1 6.3069 12.3028 7.0371 48 1 4.2286 7.3564 1.4820 49 1 3.6097 6.5433 2.9426 50 1 0.8811 1.9386 2.7754 51 1 2.0770 0.6307 2.6091 52 1 2.5854 2.2322 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001495372966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:39 Heat of formation + Delta-G solvation = 10.100130 kcal Electronic energy + Delta-G solvation = -28979.084495 eV Core-core repulsion = 25172.046403 eV Total energy + Delta-G solvation = -3807.038092 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.82 seconds Orbital eigenvalues (eV) -41.70797 -39.76668 -37.50049 -35.23408 -34.48056 -33.28283 -32.03942 -31.84181 -30.63793 -29.70398 -27.42852 -26.77246 -25.38195 -24.22873 -23.73829 -22.51670 -21.85451 -20.68326 -20.26460 -19.65399 -18.36827 -17.43882 -16.89660 -16.29112 -16.02241 -15.46010 -15.18333 -14.87344 -14.62476 -14.49894 -13.98699 -13.79151 -13.74207 -13.55564 -13.35222 -13.27890 -13.10084 -12.97290 -12.89997 -12.74836 -12.57857 -12.46753 -12.28606 -11.93115 -11.78686 -11.73664 -11.26519 -11.01896 -10.95232 -10.90406 -10.73887 -10.46115 -10.32153 -10.15565 -9.83556 -9.70823 -9.53748 -8.77104 -8.74533 -8.51103 -8.29182 -6.79858 -5.65981 -2.93746 1.73345 2.22818 2.47887 3.13797 3.40584 3.52529 3.55702 3.57755 4.15211 4.41607 4.47547 4.60550 4.64216 4.67732 4.76015 4.82406 4.92101 5.00591 5.02669 5.06186 5.10888 5.18215 5.30545 5.35598 5.42698 5.51292 5.51817 5.58378 5.66004 5.70727 5.73998 5.76016 5.79896 5.84985 5.89911 5.94162 6.04406 6.13330 6.18910 6.35100 6.41995 6.47827 6.56296 6.56655 6.71994 6.87208 6.99697 7.01588 7.04871 7.59497 7.81201 8.41068 8.53708 9.64248 10.23737 10.58593 11.57170 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.002301 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.899179 B =12164.988211 C =13405.517227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.096 3.904 3 N -0.442 5.442 4 C -0.017 4.017 5 C -0.168 4.168 6 C -0.226 4.226 7 C 0.590 3.410 8 O -0.543 6.543 9 N -0.606 5.606 10 C 0.103 3.897 11 C -0.134 4.134 12 C -0.115 4.115 13 C -0.095 4.095 14 H 0.072 0.928 15 C -0.118 4.118 16 C 0.151 3.849 17 N -0.734 5.734 18 C -0.235 4.235 19 H 0.070 0.930 20 C -0.017 4.017 21 N -0.936 5.936 22 Si 0.907 3.093 23 H -0.286 1.286 24 H -0.292 1.292 25 H -0.286 1.286 26 C 0.116 3.884 27 C 0.094 3.906 28 C -0.088 4.088 29 H 0.063 0.937 30 H 0.075 0.925 31 H 0.065 0.935 32 H 0.092 0.908 33 H 0.089 0.911 34 H 0.165 0.835 35 H 0.145 0.855 36 H 0.063 0.937 37 H 0.095 0.905 38 H 0.064 0.936 39 H 0.071 0.929 40 H 0.065 0.935 41 H 0.064 0.936 42 H 0.065 0.935 43 H 0.063 0.937 44 H 0.021 0.979 45 H 0.017 0.983 46 H 0.383 0.617 47 H 0.254 0.746 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.080 0.920 51 H 0.062 0.938 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.966 -26.897 -21.562 34.829 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.025 4.025 3 N -0.119 5.119 4 C -0.143 4.143 5 C -0.192 4.192 6 C -0.235 4.235 7 C 0.379 3.621 8 O -0.421 6.421 9 N -0.339 5.339 10 C -0.020 4.020 11 C -0.172 4.172 12 C -0.153 4.153 13 C -0.114 4.114 14 H 0.091 0.909 15 C -0.156 4.156 16 C 0.023 3.977 17 N -0.378 5.378 18 C -0.366 4.366 19 H 0.088 0.912 20 C -0.213 4.213 21 N -0.586 5.586 22 Si 0.738 3.262 23 H -0.213 1.213 24 H -0.218 1.218 25 H -0.213 1.213 26 C -0.006 4.006 27 C -0.021 4.021 28 C -0.145 4.145 29 H 0.082 0.918 30 H 0.093 0.907 31 H 0.084 0.916 32 H 0.110 0.890 33 H 0.108 0.892 34 H 0.182 0.818 35 H 0.163 0.837 36 H 0.081 0.919 37 H 0.113 0.887 38 H 0.083 0.917 39 H 0.089 0.911 40 H 0.084 0.916 41 H 0.082 0.918 42 H 0.083 0.917 43 H 0.082 0.918 44 H 0.039 0.961 45 H 0.035 0.965 46 H 0.216 0.784 47 H 0.064 0.936 48 H 0.084 0.916 49 H 0.117 0.883 50 H 0.098 0.902 51 H 0.081 0.919 52 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -5.587 -27.092 -20.942 34.695 hybrid contribution -0.156 0.574 0.518 0.789 sum -5.744 -26.519 -20.423 33.961 Atomic orbital electron populations 1.22173 0.94173 1.03054 1.03501 1.21877 0.95729 0.80491 1.04411 1.43677 1.50559 1.11940 1.05747 1.21652 1.08143 0.93352 0.91202 1.21992 1.07075 0.97056 0.93085 1.20103 1.14859 0.94837 0.93729 1.17461 0.80022 0.81192 0.83384 1.90791 1.50297 1.71047 1.29979 1.47932 1.24389 1.26238 1.35300 1.21922 0.88786 1.01855 0.89393 1.21920 0.96196 0.98608 1.00479 1.21605 0.99238 0.96850 0.97570 1.21457 0.94132 0.99073 0.96775 0.90908 1.21725 1.00564 0.95646 0.97706 1.20716 0.95864 0.89664 0.91442 1.42377 1.43844 1.21016 1.30580 1.19228 1.13006 1.02738 1.01649 0.91250 1.24735 0.99312 0.97575 0.99670 1.69651 1.33173 1.13917 1.41812 0.86256 0.79285 0.77454 0.83169 1.21329 1.21751 1.21273 1.21787 0.97378 0.85428 0.96035 1.20178 1.01649 0.90950 0.89339 1.20424 1.03755 1.00766 0.89588 0.91756 0.90662 0.91609 0.88998 0.89236 0.81792 0.83695 0.91880 0.88677 0.91720 0.91076 0.91640 0.91773 0.91668 0.91838 0.96094 0.96543 0.78390 0.93597 0.91585 0.88291 0.90173 0.91883 0.89550 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.71 10.24 37.16 0.38 -0.33 16 2 C 0.10 0.42 6.46 -4.04 -0.03 0.39 16 3 N -0.44 -3.47 2.69 -112.52 -0.30 -3.77 16 4 C -0.02 -0.13 11.33 -16.83 -0.19 -0.32 16 5 C -0.17 -1.59 8.69 -37.50 -0.33 -1.92 16 6 C -0.23 -2.79 5.32 -103.35 -0.55 -3.34 16 7 C 0.59 9.00 7.30 -12.59 -0.09 8.91 16 8 O -0.54 -10.32 15.79 5.25 0.08 -10.24 16 9 N -0.61 -8.17 2.97 -174.10 -0.52 -8.68 16 10 C 0.10 1.03 5.54 -3.71 -0.02 1.01 16 11 C -0.13 -1.28 6.08 -26.61 -0.16 -1.44 16 12 C -0.11 -1.29 5.17 -26.66 -0.14 -1.43 16 13 C -0.09 -1.34 2.34 -90.47 -0.21 -1.55 16 14 H 0.07 1.10 8.14 -51.92 -0.42 0.68 16 15 C -0.12 -2.01 4.80 -26.73 -0.13 -2.14 16 16 C 0.15 3.28 6.02 -4.04 -0.02 3.26 16 17 N -0.73 -19.86 5.60 -59.91 -0.34 -20.20 16 18 C -0.23 -6.99 9.99 -15.06 -0.15 -7.14 16 19 H 0.07 2.02 7.83 -52.49 -0.41 1.61 16 20 C -0.02 -0.53 5.50 -17.43 -0.10 -0.62 16 21 N -0.94 -29.42 13.06 55.49 0.72 -28.70 16 22 Si 0.91 23.46 29.55 -169.99 -5.02 18.43 16 23 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 24 H -0.29 -7.52 7.11 56.52 0.40 -7.12 16 25 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 26 C 0.12 1.73 5.33 -3.71 -0.02 1.71 16 27 C 0.09 1.00 6.89 -81.88 -0.56 0.44 16 28 C -0.09 -0.83 9.51 36.00 0.34 -0.49 16 29 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 30 H 0.07 0.18 8.14 -51.93 -0.42 -0.24 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.09 0.23 8.11 -51.92 -0.42 -0.19 16 33 H 0.09 0.32 7.04 -51.93 -0.37 -0.05 16 34 H 0.16 0.73 8.06 -52.49 -0.42 0.31 16 35 H 0.15 1.16 7.46 -52.49 -0.39 0.77 16 36 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 37 H 0.10 0.87 4.75 -51.93 -0.25 0.62 16 38 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 39 H 0.07 0.54 8.14 -51.93 -0.42 0.11 16 40 H 0.06 0.72 8.14 -51.93 -0.42 0.29 16 41 H 0.06 0.70 8.14 -51.93 -0.42 0.27 16 42 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 43 H 0.06 1.08 8.14 -51.93 -0.42 0.65 16 44 H 0.02 0.47 6.70 -51.93 -0.35 0.13 16 45 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 46 H 0.38 10.72 7.67 -40.82 -0.31 10.40 16 47 H 0.25 7.71 8.31 -40.82 -0.34 7.37 16 48 H 0.07 0.95 8.14 -51.93 -0.42 0.53 16 49 H 0.10 1.76 5.71 -51.93 -0.30 1.47 16 50 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 51 H 0.06 0.42 7.02 -51.92 -0.36 0.05 16 52 H 0.09 0.98 7.67 -51.93 -0.40 0.58 16 LS Contribution 407.81 15.07 6.15 6.15 Total: -1.00 -36.09 407.81 -10.23 -46.33 By element: Atomic # 1 Polarization: 14.71 SS G_CDS: -9.03 Total: 5.68 kcal Atomic # 6 Polarization: -3.01 SS G_CDS: -1.98 Total: -4.99 kcal Atomic # 7 Polarization: -60.92 SS G_CDS: -0.43 Total: -61.35 kcal Atomic # 8 Polarization: -10.32 SS G_CDS: 0.08 Total: -10.24 kcal Atomic # 14 Polarization: 23.46 SS G_CDS: -5.02 Total: 18.43 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -36.09 -10.23 -46.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495372966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.425 kcal (2) G-P(sol) polarization free energy of solvation -36.090 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.335 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.235 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.325 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.100 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.82 seconds