Wall clock time and date at job start Tue Mar 31 2020 17:58:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 N 1.46504 * 109.47360 * 2 1 4 4 C 1.36446 * 124.85079 * 264.98646 * 3 2 1 5 5 C 1.34485 * 108.85648 * 180.02562 * 4 3 2 6 6 C 1.46689 * 106.33308 * 359.97438 * 5 4 3 7 7 C 1.47257 * 126.94308 * 180.02562 * 6 5 4 8 8 O 1.21627 * 119.99892 * 140.63459 * 7 6 5 9 9 N 1.34779 * 120.00310 * 320.63114 * 7 6 5 10 10 C 1.46927 * 120.62715 * 354.37656 * 9 7 6 11 11 C 1.53191 * 108.77766 * 233.58497 * 10 9 7 12 12 C 1.53043 * 109.33728 * 305.35442 * 11 10 9 13 13 C 1.53103 * 109.50692 * 61.34674 * 12 11 10 14 14 H 1.09008 * 109.51476 * 58.62614 * 13 12 11 15 15 C 1.52995 * 109.48886 * 178.70022 * 13 12 11 16 16 C 1.52998 * 109.46985 * 184.85474 * 15 13 12 17 17 N 1.46501 * 109.47170 * 180.02562 * 16 15 13 18 18 C 1.36944 * 120.00323 * 180.02562 * 17 16 15 19 19 H 1.08002 * 119.99292 * 359.97438 * 18 17 16 20 20 C 1.38805 * 119.99923 * 179.97438 * 18 17 16 21 21 N 1.31619 * 120.00672 * 359.97438 * 20 18 17 22 22 Si 1.86804 * 119.99638 * 179.97438 * 20 18 17 23 23 H 1.48496 * 109.47034 * 60.00176 * 22 20 18 24 24 H 1.48499 * 109.47040 * 179.97438 * 22 20 18 25 25 H 1.48495 * 109.47485 * 299.99846 * 22 20 18 26 26 C 1.46921 * 120.63031 * 174.35464 * 9 7 6 27 27 C 1.34661 * 124.85050 * 85.31043 * 3 2 1 28 28 C 1.50698 * 125.80223 * 0.02562 * 27 3 2 29 29 H 1.08990 * 109.47372 * 59.99770 * 1 2 3 30 30 H 1.08995 * 109.46897 * 180.02562 * 1 2 3 31 31 H 1.09004 * 109.46608 * 299.99171 * 1 2 3 32 32 H 1.09007 * 109.46944 * 240.00431 * 2 1 3 33 33 H 1.08998 * 109.47614 * 120.00457 * 2 1 3 34 34 H 1.07998 * 125.57356 * 0.03100 * 4 3 2 35 35 H 1.07997 * 126.83797 * 179.97438 * 5 4 3 36 36 H 1.09003 * 109.58596 * 113.79819 * 10 9 7 37 37 H 1.09000 * 109.70627 * 353.44686 * 10 9 7 38 38 H 1.08998 * 109.49330 * 65.31843 * 11 10 9 39 39 H 1.08997 * 109.49876 * 185.38064 * 11 10 9 40 40 H 1.09004 * 109.45619 * 181.39753 * 12 11 10 41 41 H 1.08996 * 109.45621 * 301.35211 * 12 11 10 42 42 H 1.09001 * 109.47161 * 304.85151 * 15 13 12 43 43 H 1.08998 * 109.47254 * 64.85091 * 15 13 12 44 44 H 1.09002 * 109.47430 * 299.99872 * 16 15 13 45 45 H 1.08998 * 109.47437 * 59.99729 * 16 15 13 46 46 H 0.97002 * 119.99801 * 359.97438 * 17 16 15 47 47 H 0.96991 * 120.00227 * 180.02562 * 21 20 18 48 48 H 1.08997 * 109.58729 * 246.19638 * 26 9 7 49 49 H 1.08996 * 109.58881 * 6.63232 * 26 9 7 50 50 H 1.08998 * 109.47165 * 270.18955 * 28 27 3 51 51 H 1.09009 * 109.47295 * 30.18888 * 28 27 3 52 52 H 1.08994 * 109.47378 * 150.18665 * 28 27 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0184 1.3812 0.0000 4 6 2.3706 2.0837 -1.1154 5 6 2.7716 3.3132 -0.7463 6 6 2.6534 3.3642 0.7150 7 6 2.9750 4.5043 1.5897 8 8 2.2646 4.7583 2.5436 9 7 4.0568 5.2663 1.3333 10 6 4.9924 4.9012 0.2608 11 6 6.4087 4.8408 0.8414 12 6 6.7308 6.1686 1.5308 13 6 5.7463 6.3999 2.6803 14 1 5.8138 5.5746 3.3892 15 6 6.0889 7.7116 3.3896 16 6 5.1830 7.8827 4.6107 17 7 5.5105 9.1389 5.2895 18 6 4.8255 9.5070 6.4167 19 1 4.0435 8.8712 6.8050 20 6 5.1363 10.6970 7.0602 21 7 6.0896 11.4715 6.5873 22 14 4.2013 11.1993 8.5974 23 1 4.3836 10.1654 9.6476 24 1 4.7204 12.5007 9.0893 25 1 2.7571 11.3309 8.2776 26 6 4.3224 6.4780 2.1205 27 6 2.1898 2.1368 1.1014 28 6 1.9142 1.7047 2.5186 29 1 -0.3633 0.5138 -0.8899 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3633 0.5137 0.8901 32 1 1.8933 -0.5138 -0.8901 33 1 1.8934 -0.5139 0.8899 34 1 2.3334 1.7131 -2.1292 35 1 3.1127 4.1053 -1.3962 36 1 4.9531 5.6511 -0.5293 37 1 4.7225 3.9269 -0.1464 38 1 6.4700 4.0298 1.5671 39 1 7.1240 4.6649 0.0381 40 1 7.7473 6.1368 1.9232 41 1 6.6452 6.9820 0.8103 42 1 7.1305 7.6901 3.7101 43 1 5.9367 8.5456 2.7045 44 1 4.1414 7.9041 4.2903 45 1 5.3352 7.0486 5.2957 46 1 6.2132 9.7097 4.9410 47 1 6.3069 12.3028 7.0371 48 1 4.2286 7.3564 1.4820 49 1 3.6097 6.5433 2.9426 50 1 0.8811 1.9386 2.7754 51 1 2.0770 0.6307 2.6091 52 1 2.5854 2.2322 3.1963 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001495372966.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:58:38 Heat of formation + Delta-G solvation = -11.688323 kcal Electronic energy + Delta-G solvation = -28980.029314 eV Core-core repulsion = 25172.046403 eV Total energy + Delta-G solvation = -3807.982910 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.40996 -40.82014 -38.71578 -36.94088 -35.25151 -34.65807 -33.33655 -32.60840 -32.30135 -30.44105 -28.93103 -27.65040 -26.28848 -25.89708 -24.42667 -23.99942 -22.75830 -22.07320 -21.23591 -20.56259 -19.26077 -19.09271 -18.17371 -17.28711 -16.92446 -16.70811 -16.28549 -16.13162 -15.57211 -15.42004 -15.39599 -15.28866 -14.97724 -14.66593 -14.43424 -14.28582 -14.14145 -13.93634 -13.80324 -13.71228 -13.57173 -13.39411 -13.02097 -12.93982 -12.83646 -12.71481 -12.56671 -12.46731 -12.26981 -12.17800 -12.09467 -11.93157 -11.87077 -11.71062 -11.51771 -11.18017 -10.93350 -10.84867 -9.64515 -9.39063 -9.05772 -9.03536 -7.98046 -5.27616 0.86592 1.43902 1.48139 1.54436 1.55386 1.84206 2.18094 2.40689 2.53753 3.34176 3.61722 3.75910 3.80544 3.84904 3.90329 4.00759 4.10107 4.13516 4.14473 4.16824 4.32771 4.36374 4.42636 4.44422 4.52708 4.59347 4.61340 4.62468 4.70162 4.73391 4.82287 4.85415 4.87664 4.94173 4.94350 4.98502 5.07123 5.10206 5.12270 5.20024 5.24259 5.26343 5.32023 5.38585 5.44993 5.52017 5.64514 5.83406 6.16334 6.24685 6.41719 6.56513 7.29335 7.30303 8.05154 8.31132 9.25123 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.017101 B = 0.002301 C = 0.002088 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1636.899179 B =12164.988211 C =13405.517227 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C 0.090 3.910 3 N -0.436 5.436 4 C 0.000 4.000 5 C -0.182 4.182 6 C -0.260 4.260 7 C 0.581 3.419 8 O -0.599 6.599 9 N -0.604 5.604 10 C 0.100 3.900 11 C -0.127 4.127 12 C -0.110 4.110 13 C -0.083 4.083 14 H 0.058 0.942 15 C -0.103 4.103 16 C 0.151 3.849 17 N -0.746 5.746 18 C -0.253 4.253 19 H 0.068 0.932 20 C -0.075 4.075 21 N -0.967 5.967 22 Si 0.976 3.024 23 H -0.278 1.278 24 H -0.288 1.288 25 H -0.279 1.279 26 C 0.118 3.882 27 C 0.083 3.917 28 C -0.084 4.084 29 H 0.058 0.942 30 H 0.096 0.904 31 H 0.045 0.955 32 H 0.121 0.879 33 H 0.099 0.901 34 H 0.204 0.796 35 H 0.158 0.842 36 H 0.081 0.919 37 H 0.108 0.892 38 H 0.054 0.946 39 H 0.104 0.896 40 H 0.073 0.927 41 H 0.075 0.925 42 H 0.068 0.932 43 H 0.066 0.934 44 H 0.012 0.988 45 H 0.008 0.992 46 H 0.376 0.624 47 H 0.253 0.747 48 H 0.072 0.928 49 H 0.059 0.941 50 H 0.072 0.928 51 H 0.093 0.907 52 H 0.058 0.942 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.569 -29.221 -24.127 38.168 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.226 4.226 2 C -0.030 4.030 3 N -0.112 5.112 4 C -0.127 4.127 5 C -0.206 4.206 6 C -0.270 4.270 7 C 0.372 3.628 8 O -0.481 6.481 9 N -0.335 5.335 10 C -0.021 4.021 11 C -0.165 4.165 12 C -0.148 4.148 13 C -0.103 4.103 14 H 0.077 0.923 15 C -0.142 4.142 16 C 0.024 3.976 17 N -0.388 5.388 18 C -0.385 4.385 19 H 0.086 0.914 20 C -0.267 4.267 21 N -0.617 5.617 22 Si 0.804 3.196 23 H -0.204 1.204 24 H -0.214 1.214 25 H -0.205 1.205 26 C -0.005 4.005 27 C -0.034 4.034 28 C -0.142 4.142 29 H 0.078 0.922 30 H 0.115 0.885 31 H 0.064 0.936 32 H 0.139 0.861 33 H 0.117 0.883 34 H 0.221 0.779 35 H 0.175 0.825 36 H 0.100 0.900 37 H 0.126 0.874 38 H 0.073 0.927 39 H 0.122 0.878 40 H 0.092 0.908 41 H 0.093 0.907 42 H 0.087 0.913 43 H 0.085 0.915 44 H 0.030 0.970 45 H 0.026 0.974 46 H 0.208 0.792 47 H 0.062 0.938 48 H 0.090 0.910 49 H 0.078 0.922 50 H 0.091 0.909 51 H 0.111 0.889 52 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges -5.177 -29.467 -23.554 38.078 hybrid contribution -0.327 1.212 1.270 1.786 sum -5.504 -28.255 -22.284 36.404 Atomic orbital electron populations 1.22154 0.94109 1.04076 1.02264 1.22215 0.95716 0.78675 1.06391 1.43949 1.49331 1.12974 1.04918 1.22251 1.05563 0.92444 0.92454 1.22159 1.08346 0.98544 0.91508 1.20081 1.17306 0.94526 0.95040 1.18073 0.79740 0.81868 0.83109 1.90744 1.52201 1.72668 1.32522 1.48035 1.24602 1.25275 1.35621 1.22199 0.88118 1.03136 0.88631 1.21902 0.96496 0.97023 1.01063 1.21584 0.98385 0.98385 0.96428 1.21327 0.94639 0.96741 0.97577 0.92310 1.21586 0.99399 0.97437 0.95732 1.20829 0.96557 0.87291 0.92882 1.42565 1.43453 1.22407 1.30417 1.19580 1.13197 1.03066 1.02625 0.91410 1.25608 1.00491 0.97598 1.03004 1.69802 1.34553 1.14179 1.43195 0.85176 0.78025 0.77078 0.79278 1.20364 1.21414 1.20535 1.21588 0.96850 0.86685 0.95358 1.20252 1.01628 0.91163 0.90361 1.20353 1.02526 1.02277 0.89001 0.92247 0.88523 0.93575 0.86059 0.88283 0.77929 0.82482 0.90041 0.87370 0.92683 0.87758 0.90802 0.90667 0.91305 0.91482 0.97002 0.97390 0.79217 0.93780 0.90964 0.92198 0.90913 0.88858 0.92298 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.01 10.24 71.98 0.74 -0.27 16 2 C 0.09 0.49 6.46 86.38 0.56 1.05 16 3 N -0.44 -5.81 2.69 -509.90 -1.37 -7.18 16 4 C 0.00 -0.01 11.33 83.12 0.94 0.94 16 5 C -0.18 -3.11 8.69 23.62 0.21 -2.90 16 6 C -0.26 -6.46 5.32 -19.04 -0.10 -6.56 16 7 C 0.58 18.79 7.30 86.61 0.63 19.42 16 8 O -0.60 -24.95 15.79 -4.12 -0.06 -25.01 16 9 N -0.60 -16.68 2.97 -822.97 -2.45 -19.13 16 10 C 0.10 1.83 5.54 86.36 0.48 2.31 16 11 C -0.13 -2.11 6.08 30.67 0.19 -1.92 16 12 C -0.11 -2.27 5.17 30.64 0.16 -2.11 16 13 C -0.08 -2.38 2.34 -10.69 -0.03 -2.41 16 14 H 0.06 1.85 8.14 -2.38 -0.02 1.83 16 15 C -0.10 -3.58 4.80 30.59 0.15 -3.43 16 16 C 0.15 6.89 6.02 86.38 0.52 7.41 16 17 N -0.75 -41.66 5.60 -343.45 -1.92 -43.59 16 18 C -0.25 -15.42 9.99 84.03 0.84 -14.58 16 19 H 0.07 4.06 7.83 -2.91 -0.02 4.03 16 20 C -0.07 -4.55 5.50 84.86 0.47 -4.09 16 21 N -0.97 -61.64 13.06 21.65 0.28 -61.36 16 22 Si 0.98 48.80 29.55 68.60 2.03 50.83 16 23 H -0.28 -13.39 7.11 99.48 0.71 -12.68 16 24 H -0.29 -14.17 7.11 99.48 0.71 -13.46 16 25 H -0.28 -13.56 7.11 99.48 0.71 -12.85 16 26 C 0.12 3.70 5.33 86.37 0.46 4.16 16 27 C 0.08 1.75 6.89 41.78 0.29 2.03 16 28 C -0.08 -1.67 9.51 71.24 0.68 -0.99 16 29 H 0.06 0.43 8.14 -2.39 -0.02 0.41 16 30 H 0.10 0.18 8.14 -2.39 -0.02 0.16 16 31 H 0.05 0.47 8.14 -2.38 -0.02 0.45 16 32 H 0.12 0.02 8.11 -2.38 -0.02 0.00 16 33 H 0.10 0.39 7.04 -2.39 -0.02 0.37 16 34 H 0.20 0.75 8.06 -2.91 -0.02 0.73 16 35 H 0.16 2.15 7.46 -2.91 -0.02 2.13 16 36 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.74 4.75 -2.39 -0.01 1.73 16 38 H 0.05 1.05 8.14 -2.39 -0.02 1.03 16 39 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 40 H 0.07 1.44 8.14 -2.38 -0.02 1.42 16 41 H 0.07 1.43 8.14 -2.39 -0.02 1.41 16 42 H 0.07 2.35 8.14 -2.39 -0.02 2.33 16 43 H 0.07 2.29 8.14 -2.39 -0.02 2.27 16 44 H 0.01 0.57 6.70 -2.39 -0.02 0.56 16 45 H 0.01 0.38 8.14 -2.39 -0.02 0.36 16 46 H 0.38 21.67 7.67 -92.71 -0.71 20.96 16 47 H 0.25 15.53 8.31 -92.71 -0.77 14.76 16 48 H 0.07 2.13 8.14 -2.39 -0.02 2.12 16 49 H 0.06 2.35 5.71 -2.39 -0.01 2.33 16 50 H 0.07 1.51 8.14 -2.39 -0.02 1.49 16 51 H 0.09 1.17 7.02 -2.38 -0.02 1.15 16 52 H 0.06 1.48 7.67 -2.39 -0.02 1.46 16 Total: -1.00 -82.44 407.81 3.86 -78.58 By element: Atomic # 1 Polarization: 28.63 SS G_CDS: 0.19 Total: 28.82 kcal Atomic # 6 Polarization: -9.13 SS G_CDS: 7.17 Total: -1.96 kcal Atomic # 7 Polarization: -125.80 SS G_CDS: -5.46 Total: -131.25 kcal Atomic # 8 Polarization: -24.95 SS G_CDS: -0.06 Total: -25.01 kcal Atomic # 14 Polarization: 48.80 SS G_CDS: 2.03 Total: 50.83 kcal Total: -82.44 3.86 -78.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001495372966.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 66.893 kcal (2) G-P(sol) polarization free energy of solvation -82.444 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -15.551 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.863 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.581 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.688 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds