Wall clock time and date at job start Tue Mar 31 2020 17:56:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.50692 * 109.47296 * 120.00165 * 2 1 3 5 5 O 1.21281 * 120.00063 * 120.00026 * 4 2 1 6 6 N 1.34781 * 120.00199 * 299.99819 * 4 2 1 7 7 C 1.46501 * 119.99999 * 179.97438 * 6 4 2 8 8 H 1.08994 * 109.47028 * 35.00577 * 7 6 4 9 9 C 1.53002 * 109.46683 * 155.00102 * 7 6 4 10 10 N 1.46501 * 109.47399 * 305.00133 * 9 7 6 11 11 C 1.36933 * 120.00256 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.38811 * 120.00286 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99783 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00007 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47080 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47137 * 120.00020 * 15 13 11 18 18 H 1.48506 * 109.46914 * 239.99826 * 15 13 11 19 19 C 1.52997 * 109.47384 * 275.00079 * 7 6 4 20 20 C 1.52996 * 109.46975 * 64.99993 * 19 7 6 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 7 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 N 1.46502 * 109.46936 * 240.00363 * 2 1 3 26 26 C 1.36341 * 125.63316 * 299.68975 * 25 2 1 27 27 C 1.34858 * 108.21406 * 179.83302 * 26 25 2 28 28 C 1.40885 * 107.42029 * 0.42474 * 27 26 25 29 29 C 1.34855 * 107.41687 * 359.73464 * 28 27 26 30 30 H 1.08998 * 109.46533 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46835 * 299.99668 * 1 2 3 32 32 H 1.09002 * 109.47231 * 60.00037 * 1 2 3 33 33 H 0.96994 * 119.99617 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47140 * 65.00200 * 9 7 6 35 35 H 1.09004 * 109.46630 * 184.99946 * 9 7 6 36 36 H 0.97005 * 119.99711 * 359.97438 * 10 9 7 37 37 H 0.97001 * 120.00097 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.47280 * 185.00528 * 19 7 6 39 39 H 1.09004 * 109.47368 * 60.00217 * 20 19 7 40 40 H 1.09001 * 109.47372 * 300.00372 * 20 19 7 41 41 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 43 43 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 44 44 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 46 46 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 49 49 H 1.07993 * 125.89628 * 359.96434 * 26 25 2 50 50 H 1.08003 * 126.28623 * 180.16004 * 27 26 25 51 51 H 1.07998 * 126.29327 * 179.73724 * 28 27 26 52 52 H 1.08004 * 125.89199 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7069 -0.2500 2.4545 7 6 2.1948 -0.9410 3.6507 8 1 3.1939 -1.3334 3.4614 9 6 2.2465 0.0420 4.8220 10 7 3.0554 1.2049 4.4483 11 6 3.2448 2.2235 5.3437 12 1 2.7976 2.1697 6.3253 13 6 4.0117 3.3251 4.9898 14 7 4.5563 3.3908 3.7934 15 14 4.2695 4.7148 6.2112 16 1 3.5558 4.4018 7.4751 17 1 5.7206 4.8690 6.4865 18 1 3.7366 5.9789 5.6423 19 6 1.2503 -2.0945 3.9943 20 6 1.2938 -3.1392 2.8773 21 6 0.3488 -4.2925 3.2205 22 6 -1.0775 -3.7578 3.3634 23 6 -1.1211 -2.7130 4.4804 24 6 -0.1761 -1.5598 4.1371 25 7 2.0183 -0.6905 -1.1962 26 6 1.7656 -1.9901 -1.5220 27 6 2.3799 -2.2585 -2.6921 28 6 3.0441 -1.0845 -3.0988 29 6 2.8054 -0.1415 -2.1648 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.1489 0.5384 2.5435 34 1 1.2356 0.3667 5.0687 35 1 2.6924 -0.4477 5.6878 36 1 3.4574 1.2530 3.5668 37 1 5.0925 4.1605 3.5462 38 1 1.5626 -2.5526 4.9326 39 1 2.3101 -3.5199 2.7751 40 1 0.9814 -2.6810 1.9389 41 1 0.3801 -5.0370 2.4250 42 1 0.6607 -4.7508 4.1590 43 1 -1.3896 -3.2995 2.4250 44 1 -1.7508 -4.5793 3.6084 45 1 -0.8091 -3.1713 5.4189 46 1 -2.1372 -2.3318 4.5819 47 1 -0.2068 -0.8157 4.9331 48 1 -0.4880 -1.1015 3.1986 49 1 1.1737 -2.6842 -0.9439 50 1 2.3687 -3.2016 -3.2183 51 1 3.6355 -0.9621 -3.9941 52 1 3.1746 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496310622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:45 Heat of formation + Delta-G solvation = 8.811055 kcal Electronic energy + Delta-G solvation = -30627.793377 eV Core-core repulsion = 26820.699387 eV Total energy + Delta-G solvation = -3807.093990 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -41.29842 -40.00600 -38.07009 -35.77894 -34.27159 -33.64034 -31.46537 -30.74030 -30.54815 -29.23571 -28.52858 -27.14715 -24.72060 -23.86155 -22.79034 -21.79773 -21.34864 -20.34124 -20.16340 -19.49731 -19.34599 -17.68869 -17.09813 -16.82037 -15.90846 -15.46204 -15.00809 -14.70096 -14.43519 -14.17412 -14.11739 -13.85989 -13.55278 -13.41114 -13.37344 -13.28498 -13.17928 -12.53439 -12.46582 -12.30632 -12.21840 -12.13340 -11.99992 -11.92029 -11.75820 -11.61059 -11.10554 -11.04077 -11.01460 -10.87531 -10.84282 -10.43430 -10.21184 -10.08493 -9.84450 -9.74823 -9.67410 -8.97772 -8.68021 -8.43887 -7.92334 -7.03202 -5.85668 -3.15474 2.38841 2.72929 2.90593 3.26810 3.36870 3.43031 3.45252 3.46468 4.48601 4.55714 4.70169 4.72385 4.76994 4.80848 4.83615 5.09862 5.18798 5.25294 5.35608 5.37779 5.40542 5.41722 5.45535 5.49917 5.56599 5.60222 5.68463 5.72247 5.75921 5.80255 5.81441 5.88810 5.93897 6.04276 6.09509 6.13312 6.23489 6.26787 6.37366 6.41084 6.45574 6.47405 6.48890 6.58818 6.65127 6.85856 7.18646 7.41666 7.48021 7.61798 7.72987 8.32102 8.37591 9.44356 9.99551 10.34714 11.36696 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.004399 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.789575 B = 6364.274781 C = 8922.969165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.111 3.889 3 H 0.125 0.875 4 C 0.504 3.496 5 O -0.520 6.520 6 N -0.700 5.700 7 C 0.144 3.856 8 H 0.087 0.913 9 C 0.143 3.857 10 N -0.731 5.731 11 C -0.243 4.243 12 H 0.071 0.929 13 C -0.011 4.011 14 N -0.931 5.931 15 Si 0.906 3.094 16 H -0.280 1.280 17 H -0.291 1.291 18 H -0.291 1.291 19 C -0.093 4.093 20 C -0.104 4.104 21 C -0.120 4.120 22 C -0.117 4.117 23 C -0.118 4.118 24 C -0.114 4.114 25 N -0.428 5.428 26 C 0.018 3.982 27 C -0.214 4.214 28 C -0.201 4.201 29 C -0.016 4.016 30 H 0.068 0.932 31 H 0.081 0.919 32 H 0.074 0.926 33 H 0.403 0.597 34 H 0.029 0.971 35 H 0.032 0.968 36 H 0.385 0.615 37 H 0.255 0.745 38 H 0.076 0.924 39 H 0.064 0.936 40 H 0.062 0.938 41 H 0.055 0.945 42 H 0.057 0.943 43 H 0.056 0.944 44 H 0.054 0.946 45 H 0.060 0.940 46 H 0.057 0.943 47 H 0.068 0.932 48 H 0.060 0.940 49 H 0.152 0.848 50 H 0.130 0.870 51 H 0.131 0.869 52 H 0.158 0.842 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.693 -11.484 -7.143 18.548 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.005 3.995 3 H 0.142 0.858 4 C 0.288 3.712 5 O -0.396 6.396 6 N -0.352 5.352 7 C 0.040 3.960 8 H 0.105 0.895 9 C 0.015 3.985 10 N -0.376 5.376 11 C -0.374 4.374 12 H 0.089 0.911 13 C -0.207 4.207 14 N -0.579 5.579 15 Si 0.737 3.263 16 H -0.205 1.205 17 H -0.218 1.218 18 H -0.219 1.219 19 C -0.113 4.113 20 C -0.141 4.141 21 C -0.158 4.158 22 C -0.154 4.154 23 C -0.155 4.155 24 C -0.151 4.151 25 N -0.104 5.104 26 C -0.112 4.112 27 C -0.238 4.238 28 C -0.226 4.226 29 C -0.145 4.145 30 H 0.087 0.913 31 H 0.100 0.900 32 H 0.093 0.907 33 H 0.238 0.762 34 H 0.046 0.954 35 H 0.050 0.950 36 H 0.219 0.781 37 H 0.065 0.935 38 H 0.095 0.905 39 H 0.083 0.917 40 H 0.081 0.919 41 H 0.074 0.926 42 H 0.076 0.924 43 H 0.075 0.925 44 H 0.073 0.927 45 H 0.078 0.922 46 H 0.076 0.924 47 H 0.086 0.914 48 H 0.078 0.922 49 H 0.169 0.831 50 H 0.148 0.852 51 H 0.149 0.851 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -12.310 -11.916 -6.749 18.414 hybrid contribution 0.253 1.290 0.490 1.403 sum -12.057 -10.626 -6.258 17.247 Atomic orbital electron populations 1.22106 0.91551 1.03730 1.04005 1.21318 0.96521 0.98008 0.83701 0.85751 1.20357 0.81068 0.85102 0.84696 1.90758 1.36917 1.25648 1.86276 1.45858 1.52944 1.31559 1.04829 1.21321 0.97814 0.92302 0.84582 0.89515 1.21021 0.95452 0.88327 0.93666 1.42354 1.60168 1.18285 1.16799 1.19250 1.26072 0.96600 0.95448 0.91095 1.24739 1.00342 0.98743 0.96879 1.69669 1.38217 1.30882 1.19162 0.86132 0.77569 0.82270 0.80279 1.20537 1.21829 1.21855 1.21526 0.95140 0.95430 0.99224 1.21600 0.99409 0.94983 0.98121 1.21574 0.95122 0.98025 1.01081 1.21515 0.96847 0.98222 0.98858 1.21524 0.99146 0.96403 0.98450 1.21607 0.94238 0.97509 1.01773 1.43706 1.39659 1.10274 1.16724 1.21556 1.05832 0.85590 0.98179 1.20778 1.05565 0.99124 0.98327 1.20792 1.06630 0.93945 1.01238 1.21810 1.01185 0.99979 0.91490 0.91345 0.90008 0.90675 0.76152 0.95356 0.95004 0.78093 0.93507 0.90522 0.91705 0.91913 0.92584 0.92390 0.92474 0.92689 0.92169 0.92446 0.91363 0.92165 0.83092 0.85243 0.85104 0.82413 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.14 37.16 0.34 -1.09 16 2 C 0.11 1.36 3.36 -69.08 -0.23 1.13 16 3 H 0.12 1.46 8.06 -51.93 -0.42 1.04 16 4 C 0.50 7.39 5.68 -10.99 -0.06 7.33 16 5 O -0.52 -9.25 12.58 5.56 0.07 -9.18 16 6 N -0.70 -9.84 3.38 -53.81 -0.18 -10.03 16 7 C 0.14 2.22 2.11 -67.93 -0.14 2.08 16 8 H 0.09 1.58 7.58 -51.93 -0.39 1.19 16 9 C 0.14 2.60 5.68 -4.04 -0.02 2.58 16 10 N -0.73 -17.21 5.43 -59.91 -0.33 -17.54 16 11 C -0.24 -6.45 9.99 -15.06 -0.15 -6.60 16 12 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 13 C -0.01 -0.30 5.50 -17.43 -0.10 -0.39 16 14 N -0.93 -27.23 13.06 55.49 0.72 -26.50 16 15 Si 0.91 21.74 29.55 -169.99 -5.02 16.71 16 16 H -0.28 -6.50 7.11 56.52 0.40 -6.10 16 17 H -0.29 -7.10 7.11 56.52 0.40 -6.70 16 18 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 19 C -0.09 -1.18 2.01 -90.62 -0.18 -1.36 16 20 C -0.10 -1.32 3.81 -26.73 -0.10 -1.42 16 21 C -0.12 -1.29 5.92 -26.73 -0.16 -1.45 16 22 C -0.12 -1.13 5.92 -26.73 -0.16 -1.29 16 23 C -0.12 -1.15 5.92 -26.73 -0.16 -1.31 16 24 C -0.11 -1.26 4.75 -26.73 -0.13 -1.39 16 25 N -0.43 -5.85 2.40 -111.25 -0.27 -6.12 16 26 C 0.02 0.26 9.56 -16.75 -0.16 0.10 16 27 C -0.21 -2.93 10.86 -39.78 -0.43 -3.37 16 28 C -0.20 -2.74 10.86 -39.78 -0.43 -3.17 16 29 C -0.02 -0.21 11.39 -16.75 -0.19 -0.41 16 30 H 0.07 0.63 7.92 -51.93 -0.41 0.22 16 31 H 0.08 0.64 7.56 -51.93 -0.39 0.25 16 32 H 0.07 0.64 8.14 -51.93 -0.42 0.21 16 33 H 0.40 5.34 8.02 -40.82 -0.33 5.02 16 34 H 0.03 0.50 6.34 -51.93 -0.33 0.17 16 35 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 36 H 0.39 9.73 7.33 -40.82 -0.30 9.43 16 37 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 38 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 39 H 0.06 0.96 7.85 -51.93 -0.41 0.55 16 40 H 0.06 0.86 5.65 -51.93 -0.29 0.57 16 41 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 42 H 0.06 0.61 8.14 -51.93 -0.42 0.18 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.05 0.48 8.14 -51.93 -0.42 0.06 16 45 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 46 H 0.06 0.52 8.14 -51.93 -0.42 0.09 16 47 H 0.07 0.80 6.46 -51.93 -0.34 0.46 16 48 H 0.06 0.66 7.47 -51.93 -0.39 0.27 16 49 H 0.15 1.94 8.06 -52.49 -0.42 1.51 16 50 H 0.13 1.54 8.06 -52.48 -0.42 1.11 16 51 H 0.13 1.53 8.06 -52.49 -0.42 1.10 16 52 H 0.16 1.84 8.06 -52.48 -0.42 1.42 16 LS Contribution 402.09 15.07 6.06 6.06 Total: -1.00 -31.20 402.09 -10.45 -41.66 By element: Atomic # 1 Polarization: 24.01 SS G_CDS: -9.04 Total: 14.98 kcal Atomic # 6 Polarization: -7.57 SS G_CDS: -2.47 Total: -10.04 kcal Atomic # 7 Polarization: -60.13 SS G_CDS: -0.05 Total: -60.19 kcal Atomic # 8 Polarization: -9.25 SS G_CDS: 0.07 Total: -9.18 kcal Atomic # 14 Polarization: 21.74 SS G_CDS: -5.02 Total: 16.71 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -31.20 -10.45 -41.66 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496310622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.467 kcal (2) G-P(sol) polarization free energy of solvation -31.204 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.263 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.452 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.656 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.811 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.91 seconds