Wall clock time and date at job start Tue Mar 31 2020 17:56:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.09004 * 109.46963 * 2 1 4 4 C 1.50692 * 109.47296 * 120.00165 * 2 1 3 5 5 O 1.21281 * 120.00063 * 120.00026 * 4 2 1 6 6 N 1.34781 * 120.00199 * 299.99819 * 4 2 1 7 7 C 1.46501 * 119.99999 * 179.97438 * 6 4 2 8 8 H 1.08994 * 109.47028 * 35.00577 * 7 6 4 9 9 C 1.53002 * 109.46683 * 155.00102 * 7 6 4 10 10 N 1.46501 * 109.47399 * 305.00133 * 9 7 6 11 11 C 1.36933 * 120.00256 * 180.02562 * 10 9 7 12 12 H 1.08001 * 119.99943 * 359.97438 * 11 10 9 13 13 C 1.38811 * 120.00286 * 179.97438 * 11 10 9 14 14 N 1.31618 * 119.99783 * 0.02562 * 13 11 10 15 15 Si 1.86803 * 120.00007 * 179.97438 * 13 11 10 16 16 H 1.48495 * 109.47080 * 359.97438 * 15 13 11 17 17 H 1.48498 * 109.47137 * 120.00020 * 15 13 11 18 18 H 1.48506 * 109.46914 * 239.99826 * 15 13 11 19 19 C 1.52997 * 109.47384 * 275.00079 * 7 6 4 20 20 C 1.52996 * 109.46975 * 64.99993 * 19 7 6 21 21 C 1.53000 * 109.47328 * 180.02562 * 20 19 7 22 22 C 1.52997 * 109.47060 * 60.00126 * 21 20 19 23 23 C 1.53006 * 109.47127 * 300.00449 * 22 21 20 24 24 C 1.52997 * 109.47164 * 59.99836 * 23 22 21 25 25 N 1.46502 * 109.46936 * 240.00363 * 2 1 3 26 26 C 1.36341 * 125.63316 * 299.68975 * 25 2 1 27 27 C 1.34858 * 108.21406 * 179.83302 * 26 25 2 28 28 C 1.40885 * 107.42029 * 0.42474 * 27 26 25 29 29 C 1.34855 * 107.41687 * 359.73464 * 28 27 26 30 30 H 1.08998 * 109.46533 * 179.97438 * 1 2 3 31 31 H 1.08999 * 109.46835 * 299.99668 * 1 2 3 32 32 H 1.09002 * 109.47231 * 60.00037 * 1 2 3 33 33 H 0.96994 * 119.99617 * 0.02562 * 6 4 2 34 34 H 1.09002 * 109.47140 * 65.00200 * 9 7 6 35 35 H 1.09004 * 109.46630 * 184.99946 * 9 7 6 36 36 H 0.97005 * 119.99711 * 359.97438 * 10 9 7 37 37 H 0.97001 * 120.00097 * 180.02562 * 14 13 11 38 38 H 1.08992 * 109.47280 * 185.00528 * 19 7 6 39 39 H 1.09004 * 109.47368 * 60.00217 * 20 19 7 40 40 H 1.09001 * 109.47372 * 300.00372 * 20 19 7 41 41 H 1.09002 * 109.47398 * 180.02562 * 21 20 19 42 42 H 1.09001 * 109.47194 * 300.00476 * 21 20 19 43 43 H 1.08998 * 109.47533 * 59.99948 * 22 21 20 44 44 H 1.08996 * 109.47853 * 180.02562 * 22 21 20 45 45 H 1.09001 * 109.47002 * 299.99574 * 23 22 21 46 46 H 1.09000 * 109.47050 * 179.97438 * 23 22 21 47 47 H 1.09002 * 109.47045 * 180.02562 * 24 23 22 48 48 H 1.09001 * 109.47375 * 59.99966 * 24 23 22 49 49 H 1.07993 * 125.89628 * 359.96434 * 26 25 2 50 50 H 1.08003 * 126.28623 * 180.16004 * 27 26 25 51 51 H 1.07998 * 126.29327 * 179.73724 * 28 27 26 52 52 H 1.08004 * 125.89199 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0324 -0.7104 1.2304 5 8 2.7297 -1.6965 1.1191 6 7 1.7069 -0.2500 2.4545 7 6 2.1948 -0.9410 3.6507 8 1 3.1939 -1.3334 3.4614 9 6 2.2465 0.0420 4.8220 10 7 3.0554 1.2049 4.4483 11 6 3.2448 2.2235 5.3437 12 1 2.7976 2.1697 6.3253 13 6 4.0117 3.3251 4.9898 14 7 4.5563 3.3908 3.7934 15 14 4.2695 4.7148 6.2112 16 1 3.5558 4.4018 7.4751 17 1 5.7206 4.8690 6.4865 18 1 3.7366 5.9789 5.6423 19 6 1.2503 -2.0945 3.9943 20 6 1.2938 -3.1392 2.8773 21 6 0.3488 -4.2925 3.2205 22 6 -1.0775 -3.7578 3.3634 23 6 -1.1211 -2.7130 4.4804 24 6 -0.1761 -1.5598 4.1371 25 7 2.0183 -0.6905 -1.1962 26 6 1.7656 -1.9901 -1.5220 27 6 2.3799 -2.2585 -2.6921 28 6 3.0441 -1.0845 -3.0988 29 6 2.8054 -0.1415 -2.1648 30 1 -0.3632 -1.0277 -0.0005 31 1 -0.3633 0.5138 0.8900 32 1 -0.3634 0.5138 -0.8900 33 1 1.1489 0.5384 2.5435 34 1 1.2356 0.3667 5.0687 35 1 2.6924 -0.4477 5.6878 36 1 3.4574 1.2530 3.5668 37 1 5.0925 4.1605 3.5462 38 1 1.5626 -2.5526 4.9326 39 1 2.3101 -3.5199 2.7751 40 1 0.9814 -2.6810 1.9389 41 1 0.3801 -5.0370 2.4250 42 1 0.6607 -4.7508 4.1590 43 1 -1.3896 -3.2995 2.4250 44 1 -1.7508 -4.5793 3.6084 45 1 -0.8091 -3.1713 5.4189 46 1 -2.1372 -2.3318 4.5819 47 1 -0.2068 -0.8157 4.9331 48 1 -0.4880 -1.1015 3.1986 49 1 1.1737 -2.6842 -0.9439 50 1 2.3687 -3.2016 -3.2183 51 1 3.6355 -0.9621 -3.9941 52 1 3.1746 0.8733 -2.1808 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496310622.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:44 Heat of formation + Delta-G solvation = -7.615471 kcal Electronic energy + Delta-G solvation = -30628.505685 eV Core-core repulsion = 26820.699387 eV Total energy + Delta-G solvation = -3807.806298 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.97 seconds Orbital eigenvalues (eV) -42.36336 -41.14221 -39.13017 -37.19025 -35.43151 -35.16582 -32.99245 -32.02610 -31.57497 -30.19854 -29.56087 -28.60571 -25.95970 -25.29474 -23.94321 -23.01401 -22.47396 -21.39447 -21.24403 -20.57005 -20.39082 -19.28754 -18.53161 -17.94609 -17.12005 -16.66580 -16.47602 -16.01035 -15.60334 -15.31936 -15.22311 -14.96779 -14.84821 -14.71943 -14.53949 -14.41023 -14.35526 -13.82837 -13.45349 -13.39280 -13.24884 -13.20058 -13.04660 -12.96568 -12.91915 -12.84002 -12.64427 -12.56499 -12.21675 -12.02530 -11.99409 -11.92660 -11.76840 -11.31849 -11.16632 -10.99005 -10.88822 -10.71391 -9.90260 -9.49245 -9.00608 -8.98261 -7.95361 -5.24247 1.31140 1.47597 1.49104 1.56640 1.58176 1.88241 2.21127 2.34231 2.55455 3.39482 3.49991 3.61968 3.79174 3.82701 3.85240 3.88787 4.10984 4.15910 4.17955 4.28432 4.39812 4.48288 4.50735 4.56591 4.58887 4.62327 4.66954 4.70829 4.75063 4.77461 4.81385 4.82438 4.90464 5.05149 5.06238 5.15762 5.24909 5.26731 5.33470 5.34965 5.42337 5.43327 5.45385 5.51347 5.51924 5.59554 5.66549 6.14787 6.25741 6.37360 6.40847 6.59755 7.20445 7.33581 8.06656 8.30315 9.27786 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008572 B = 0.004399 C = 0.003137 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3265.789575 B = 6364.274781 C = 8922.969165 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C 0.113 3.887 3 H 0.129 0.871 4 C 0.503 3.497 5 O -0.555 6.555 6 N -0.693 5.693 7 C 0.157 3.843 8 H 0.052 0.948 9 C 0.146 3.854 10 N -0.742 5.742 11 C -0.241 4.241 12 H 0.078 0.922 13 C -0.071 4.071 14 N -0.968 5.968 15 Si 0.969 3.031 16 H -0.265 1.265 17 H -0.300 1.300 18 H -0.293 1.293 19 C -0.085 4.085 20 C -0.095 4.095 21 C -0.117 4.117 22 C -0.113 4.113 23 C -0.114 4.114 24 C -0.109 4.109 25 N -0.432 5.432 26 C 0.007 3.993 27 C -0.227 4.227 28 C -0.213 4.213 29 C -0.032 4.032 30 H 0.068 0.932 31 H 0.098 0.902 32 H 0.086 0.914 33 H 0.410 0.590 34 H 0.049 0.951 35 H 0.029 0.971 36 H 0.374 0.626 37 H 0.249 0.751 38 H 0.078 0.922 39 H 0.035 0.965 40 H 0.053 0.947 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.057 0.943 44 H 0.070 0.930 45 H 0.062 0.938 46 H 0.072 0.928 47 H 0.066 0.934 48 H 0.064 0.936 49 H 0.157 0.843 50 H 0.143 0.857 51 H 0.146 0.854 52 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.963 -11.583 -6.442 19.989 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.006 3.994 3 H 0.147 0.853 4 C 0.289 3.711 5 O -0.433 6.433 6 N -0.345 5.345 7 C 0.051 3.949 8 H 0.070 0.930 9 C 0.019 3.981 10 N -0.385 5.385 11 C -0.372 4.372 12 H 0.096 0.904 13 C -0.263 4.263 14 N -0.618 5.618 15 Si 0.799 3.201 16 H -0.189 1.189 17 H -0.227 1.227 18 H -0.220 1.220 19 C -0.105 4.105 20 C -0.132 4.132 21 C -0.155 4.155 22 C -0.151 4.151 23 C -0.152 4.152 24 C -0.147 4.147 25 N -0.108 5.108 26 C -0.123 4.123 27 C -0.251 4.251 28 C -0.238 4.238 29 C -0.161 4.161 30 H 0.087 0.913 31 H 0.116 0.884 32 H 0.105 0.895 33 H 0.246 0.754 34 H 0.066 0.934 35 H 0.047 0.953 36 H 0.206 0.794 37 H 0.058 0.942 38 H 0.096 0.904 39 H 0.054 0.946 40 H 0.072 0.928 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.076 0.924 44 H 0.089 0.911 45 H 0.080 0.920 46 H 0.090 0.910 47 H 0.084 0.916 48 H 0.083 0.917 49 H 0.174 0.826 50 H 0.161 0.839 51 H 0.164 0.836 52 H 0.190 0.810 Dipole moment (debyes) X Y Z Total from point charges -14.628 -12.031 -6.013 19.871 hybrid contribution 0.992 1.240 0.285 1.614 sum -13.635 -10.791 -5.728 18.308 Atomic orbital electron populations 1.22094 0.88841 1.04204 1.05352 1.21439 0.98550 0.97426 0.81971 0.85281 1.20804 0.80317 0.84671 0.85357 1.90747 1.38479 1.27328 1.86771 1.45755 1.52691 1.31572 1.04443 1.21063 0.97139 0.92491 0.84178 0.92992 1.21150 0.95264 0.87126 0.94556 1.42520 1.60757 1.19257 1.15938 1.19643 1.24766 0.96901 0.95917 0.90366 1.25482 1.01034 1.01299 0.98494 1.69818 1.39583 1.31425 1.21018 0.85140 0.76799 0.79359 0.78841 1.18929 1.22733 1.21990 1.21445 0.95698 0.94188 0.99126 1.21455 0.98357 0.95682 0.97728 1.21550 0.95511 0.97132 1.01308 1.21494 0.95957 0.98684 0.98920 1.21509 0.99442 0.95739 0.98497 1.21573 0.93081 0.98087 1.01946 1.43856 1.39656 1.10352 1.16947 1.21755 1.06185 0.85937 0.98442 1.21092 1.05589 0.99886 0.98573 1.21107 1.06810 0.93929 1.01933 1.22204 1.01300 1.00881 0.91691 0.91280 0.88380 0.89546 0.75401 0.93350 0.95265 0.79432 0.94167 0.90384 0.94586 0.92791 0.92348 0.92034 0.92392 0.91136 0.91952 0.90954 0.91587 0.91727 0.82568 0.83877 0.83585 0.80962 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.43 9.14 71.98 0.66 -1.78 16 2 C 0.11 2.69 3.36 44.24 0.15 2.83 16 3 H 0.13 2.96 8.06 -2.39 -0.02 2.94 16 4 C 0.50 14.87 5.68 87.65 0.50 15.36 16 5 O -0.56 -20.36 12.58 -3.03 -0.04 -20.40 16 6 N -0.69 -19.36 3.38 -442.54 -1.50 -20.86 16 7 C 0.16 4.84 2.11 44.99 0.09 4.94 16 8 H 0.05 1.99 7.58 -2.39 -0.02 1.97 16 9 C 0.15 5.20 5.68 86.38 0.49 5.69 16 10 N -0.74 -34.93 5.43 -343.44 -1.87 -36.80 16 11 C -0.24 -12.65 9.99 84.03 0.84 -11.81 16 12 H 0.08 3.93 7.83 -2.91 -0.02 3.91 16 13 C -0.07 -3.89 5.50 84.86 0.47 -3.42 16 14 N -0.97 -57.33 13.06 21.65 0.28 -57.05 16 15 Si 0.97 44.58 29.55 68.60 2.03 46.61 16 16 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 17 H -0.30 -14.10 7.11 99.48 0.71 -13.39 16 18 H -0.29 -13.42 7.11 99.48 0.71 -12.71 16 19 C -0.08 -2.08 2.01 -10.80 -0.02 -2.10 16 20 C -0.09 -2.40 3.81 30.59 0.12 -2.28 16 21 C -0.12 -2.35 5.92 30.59 0.18 -2.17 16 22 C -0.11 -1.87 5.92 30.60 0.18 -1.69 16 23 C -0.11 -1.90 5.92 30.60 0.18 -1.71 16 24 C -0.11 -2.18 4.75 30.59 0.15 -2.04 16 25 N -0.43 -11.69 2.40 -505.90 -1.22 -12.91 16 26 C 0.01 0.19 9.56 83.22 0.80 0.98 16 27 C -0.23 -6.17 10.86 22.14 0.24 -5.93 16 28 C -0.21 -5.72 10.86 22.14 0.24 -5.48 16 29 C -0.03 -0.86 11.39 83.21 0.95 0.09 16 30 H 0.07 1.15 7.92 -2.39 -0.02 1.14 16 31 H 0.10 1.30 7.56 -2.39 -0.02 1.28 16 32 H 0.09 1.27 8.14 -2.39 -0.02 1.25 16 33 H 0.41 10.46 8.02 -92.71 -0.74 9.72 16 34 H 0.05 1.59 6.34 -2.39 -0.02 1.57 16 35 H 0.03 1.08 8.14 -2.39 -0.02 1.06 16 36 H 0.37 19.20 7.33 -92.70 -0.68 18.52 16 37 H 0.25 14.44 8.31 -92.71 -0.77 13.67 16 38 H 0.08 1.90 8.14 -2.39 -0.02 1.88 16 39 H 0.04 1.11 7.85 -2.39 -0.02 1.09 16 40 H 0.05 1.46 5.65 -2.39 -0.01 1.45 16 41 H 0.06 1.14 8.14 -2.39 -0.02 1.13 16 42 H 0.06 1.19 8.14 -2.39 -0.02 1.17 16 43 H 0.06 0.97 8.14 -2.39 -0.02 0.95 16 44 H 0.07 0.99 8.14 -2.39 -0.02 0.97 16 45 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 46 H 0.07 1.03 8.14 -2.39 -0.02 1.01 16 47 H 0.07 1.36 6.46 -2.39 -0.02 1.35 16 48 H 0.06 1.24 7.47 -2.39 -0.02 1.23 16 49 H 0.16 4.00 8.06 -2.91 -0.02 3.98 16 50 H 0.14 3.33 8.06 -2.91 -0.02 3.30 16 51 H 0.15 3.30 8.06 -2.91 -0.02 3.28 16 52 H 0.17 3.95 8.06 -2.91 -0.02 3.93 16 Total: -1.00 -67.30 402.09 3.38 -63.93 By element: Atomic # 1 Polarization: 48.51 SS G_CDS: -0.52 Total: 47.99 kcal Atomic # 6 Polarization: -16.71 SS G_CDS: 6.20 Total: -10.51 kcal Atomic # 7 Polarization: -123.32 SS G_CDS: -4.30 Total: -127.61 kcal Atomic # 8 Polarization: -20.36 SS G_CDS: -0.04 Total: -20.40 kcal Atomic # 14 Polarization: 44.58 SS G_CDS: 2.03 Total: 46.61 kcal Total: -67.30 3.38 -63.93 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496310622.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 56.310 kcal (2) G-P(sol) polarization free energy of solvation -67.304 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -10.994 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.378 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.925 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.615 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds