Wall clock time and date at job start Tue Mar 31 2020 17:56:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47480 * 35.27807 * 7 6 4 9 9 C 1.52999 * 109.47493 * 155.28120 * 7 6 4 10 10 N 1.46510 * 109.46482 * 304.99988 * 9 7 6 11 11 C 1.36939 * 119.99628 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00228 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99565 * 180.02562 * 13 11 10 15 15 Si 1.86789 * 120.00243 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47744 * 89.99623 * 15 13 11 17 17 H 1.48510 * 109.47039 * 209.99876 * 15 13 11 18 18 H 1.48497 * 109.47226 * 329.99454 * 15 13 11 19 19 C 1.52999 * 109.47136 * 275.27771 * 7 6 4 20 20 C 1.53005 * 109.47303 * 180.02562 * 19 7 6 21 21 C 1.52999 * 109.47303 * 179.97438 * 20 19 7 22 22 C 1.53002 * 109.47179 * 60.00200 * 21 20 19 23 23 C 1.53005 * 109.46840 * 300.00084 * 22 21 20 24 24 C 1.52999 * 109.47303 * 59.99992 * 23 22 21 25 25 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 26 26 C 1.36335 * 125.63291 * 59.69717 * 25 2 1 27 27 C 1.34856 * 108.22058 * 179.83131 * 26 25 2 28 28 C 1.40897 * 107.41042 * 0.41985 * 27 26 25 29 29 C 1.34848 * 107.41775 * 359.73918 * 28 27 26 30 30 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 32 32 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47318 * 64.99083 * 9 7 6 35 35 H 1.08988 * 109.47710 * 185.00333 * 9 7 6 36 36 H 0.97003 * 120.00089 * 359.97438 * 10 9 7 37 37 H 0.97000 * 120.00018 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.47500 * 299.99940 * 19 7 6 39 39 H 1.08999 * 109.47389 * 300.00082 * 20 19 7 40 40 H 1.09006 * 109.46974 * 59.99857 * 20 19 7 41 41 H 1.09000 * 109.47077 * 299.99800 * 21 20 19 42 42 H 1.09005 * 109.47368 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.47178 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47442 * 59.99824 * 22 21 20 45 45 H 1.09006 * 109.46786 * 299.99624 * 23 22 21 46 46 H 1.08999 * 109.46630 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.46873 * 180.02562 * 24 23 22 48 48 H 1.08999 * 109.46965 * 59.99658 * 24 23 22 49 49 H 1.08006 * 125.89282 * 359.95982 * 26 25 2 50 50 H 1.07992 * 126.29534 * 180.15999 * 27 26 25 51 51 H 1.08001 * 126.28659 * 179.73307 * 28 27 26 52 52 H 1.08000 * 125.89183 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 2.2365 -2.0105 -3.4641 9 6 1.2606 -0.6553 -4.8248 10 7 -0.1069 -1.0314 -4.4572 11 6 -1.1271 -0.8673 -5.3558 12 1 -0.9237 -0.4610 -6.3355 13 6 -2.4226 -1.2241 -5.0076 14 7 -3.4032 -1.0669 -5.8715 15 14 -2.7743 -1.9275 -3.3133 16 1 -3.0918 -0.8218 -2.3743 17 1 -3.9303 -2.8564 -3.3932 18 1 -1.5806 -2.6638 -2.8254 19 6 3.6037 -0.4302 -3.9875 20 6 4.1187 -1.1474 -5.2371 21 6 5.5222 -0.6399 -5.5744 22 6 6.4623 -0.9219 -4.4007 23 6 5.9472 -0.2048 -3.1511 24 6 4.5438 -0.7122 -2.8138 25 7 2.0183 -0.6905 1.1963 26 6 1.7560 -1.9866 1.5280 27 6 2.3799 -2.2586 2.6922 28 6 3.0441 -1.0844 3.0988 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5388 -2.5436 34 1 1.2921 0.4066 -5.0685 35 1 1.5768 -1.2365 -5.6909 36 1 -0.2895 -1.3967 -3.5773 37 1 -4.3085 -1.3159 -5.6281 38 1 3.5674 0.6431 -4.1742 39 1 4.1551 -2.2208 -5.0510 40 1 3.4492 -0.9461 -6.0735 41 1 5.4854 0.4334 -5.7608 42 1 5.8889 -1.1505 -6.4650 43 1 7.4619 -0.5600 -4.6409 44 1 6.4991 -1.9953 -4.2144 45 1 5.9105 0.8686 -3.3375 46 1 6.6172 -0.4053 -2.3151 47 1 4.1768 -0.2010 -1.9239 48 1 4.5806 -1.7856 -2.6276 49 1 1.1540 -2.6773 0.9559 50 1 2.3688 -3.2015 3.2184 51 1 3.6356 -0.9620 3.9941 52 1 3.1739 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001496310624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:49 Heat of formation + Delta-G solvation = 11.823066 kcal Electronic energy + Delta-G solvation = -30498.786877 eV Core-core repulsion = 26691.823497 eV Total energy + Delta-G solvation = -3806.963380 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.86 seconds Orbital eigenvalues (eV) -41.41956 -40.06779 -38.25026 -35.98061 -34.39418 -33.77275 -31.74678 -30.96635 -30.63400 -29.32066 -28.65711 -27.44881 -24.87835 -23.70785 -22.64502 -21.66269 -21.32027 -20.51447 -20.28663 -19.86177 -19.48374 -18.04975 -17.42214 -16.90232 -16.05208 -15.85552 -14.94406 -14.56823 -14.42212 -14.29763 -14.15253 -13.95198 -13.85276 -13.62520 -13.50219 -13.43956 -12.89659 -12.57842 -12.49864 -12.41206 -12.23391 -12.22131 -12.17058 -12.03143 -11.90436 -11.69495 -11.51916 -11.12236 -11.01124 -10.99822 -10.80541 -10.52867 -10.32400 -10.20269 -9.90528 -9.79892 -9.70258 -9.03464 -8.85776 -8.55907 -8.04639 -7.36202 -5.87271 -3.23889 2.26340 2.51494 2.75055 3.15768 3.24925 3.29917 3.30569 3.36976 4.40218 4.48316 4.56230 4.60332 4.62678 4.76027 4.80522 4.97255 5.05274 5.24397 5.25739 5.29757 5.35456 5.39510 5.41103 5.45161 5.51179 5.56318 5.61444 5.63416 5.65230 5.67019 5.70287 5.78956 5.84662 5.96028 6.02098 6.12586 6.17377 6.22310 6.28262 6.31990 6.34594 6.37605 6.38525 6.46403 6.56392 6.72487 7.06711 7.29235 7.34174 7.54646 7.87669 8.18010 8.31298 9.09498 9.81504 10.00620 11.30894 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007250 B = 0.005493 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3861.347335 B = 5095.994762 C = 8466.045446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.115 3.885 3 H 0.120 0.880 4 C 0.501 3.499 5 O -0.516 6.516 6 N -0.709 5.709 7 C 0.140 3.860 8 H 0.088 0.912 9 C 0.149 3.851 10 N -0.754 5.754 11 C -0.247 4.247 12 H 0.091 0.909 13 C 0.008 3.992 14 N -0.931 5.931 15 Si 0.879 3.121 16 H -0.283 1.283 17 H -0.290 1.290 18 H -0.278 1.278 19 C -0.091 4.091 20 C -0.116 4.116 21 C -0.116 4.116 22 C -0.119 4.119 23 C -0.119 4.119 24 C -0.102 4.102 25 N -0.429 5.429 26 C 0.021 3.979 27 C -0.212 4.212 28 C -0.199 4.199 29 C -0.021 4.021 30 H 0.071 0.929 31 H 0.077 0.923 32 H 0.086 0.914 33 H 0.404 0.596 34 H 0.033 0.967 35 H 0.046 0.954 36 H 0.362 0.638 37 H 0.260 0.740 38 H 0.070 0.930 39 H 0.063 0.937 40 H 0.071 0.929 41 H 0.060 0.940 42 H 0.060 0.940 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.056 0.944 46 H 0.055 0.945 47 H 0.055 0.945 48 H 0.069 0.931 49 H 0.154 0.846 50 H 0.131 0.869 51 H 0.131 0.869 52 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.410 4.649 11.069 20.333 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.008 3.992 3 H 0.138 0.862 4 C 0.284 3.716 5 O -0.392 6.392 6 N -0.361 5.361 7 C 0.035 3.965 8 H 0.106 0.894 9 C 0.021 3.979 10 N -0.401 5.401 11 C -0.377 4.377 12 H 0.109 0.891 13 C -0.188 4.188 14 N -0.578 5.578 15 Si 0.709 3.291 16 H -0.210 1.210 17 H -0.216 1.216 18 H -0.204 1.204 19 C -0.111 4.111 20 C -0.154 4.154 21 C -0.154 4.154 22 C -0.156 4.156 23 C -0.157 4.157 24 C -0.140 4.140 25 N -0.106 5.106 26 C -0.109 4.109 27 C -0.236 4.236 28 C -0.223 4.223 29 C -0.150 4.150 30 H 0.090 0.910 31 H 0.096 0.904 32 H 0.105 0.895 33 H 0.239 0.761 34 H 0.051 0.949 35 H 0.063 0.937 36 H 0.195 0.805 37 H 0.070 0.930 38 H 0.089 0.911 39 H 0.082 0.918 40 H 0.090 0.910 41 H 0.078 0.922 42 H 0.079 0.921 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.073 0.927 48 H 0.087 0.913 49 H 0.171 0.829 50 H 0.149 0.851 51 H 0.149 0.851 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges 16.655 4.157 10.616 20.183 hybrid contribution -0.698 -0.139 1.072 1.287 sum 15.957 4.018 11.688 20.183 Atomic orbital electron populations 1.22184 0.91065 1.04521 1.04398 1.21298 0.96915 0.97332 0.83671 0.86180 1.20453 0.80948 0.85445 0.84737 1.90770 1.36706 1.25427 1.86260 1.45979 1.52769 1.32320 1.05037 1.21420 0.92831 0.97835 0.84387 0.89418 1.20999 0.84444 0.98495 0.93925 1.42701 1.03301 1.78172 1.15889 1.19037 0.86104 1.36133 0.96430 0.89099 1.24653 0.95654 1.01094 0.97369 1.69692 1.00014 1.53634 1.34489 0.86633 0.77625 0.79181 0.85622 1.20950 1.21595 1.20417 1.21514 0.93694 1.00279 0.95595 1.21615 0.96190 1.00213 0.97333 1.21507 0.95246 1.01035 0.97599 1.21534 0.98225 1.00600 0.95271 1.21556 0.97090 0.99651 0.97360 1.21590 0.93523 1.01998 0.96878 1.43708 1.39576 1.10562 1.16711 1.21666 1.05227 0.85678 0.98329 1.20802 1.05222 0.99220 0.98372 1.20799 1.06591 0.93899 1.01058 1.21711 1.01884 0.99715 0.91701 0.91031 0.90438 0.89522 0.76074 0.94909 0.93661 0.80534 0.92954 0.91111 0.91804 0.91009 0.92161 0.92147 0.92587 0.92128 0.92566 0.92594 0.92664 0.91273 0.82883 0.85084 0.85071 0.82611 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.79 9.13 37.16 0.34 -1.46 16 2 C 0.11 1.29 3.36 -69.08 -0.23 1.06 16 3 H 0.12 1.01 8.06 -51.93 -0.42 0.60 16 4 C 0.50 6.86 5.46 -10.99 -0.06 6.80 16 5 O -0.52 -8.67 12.58 5.55 0.07 -8.60 16 6 N -0.71 -9.35 4.30 -53.81 -0.23 -9.59 16 7 C 0.14 2.03 2.00 -67.93 -0.14 1.89 16 8 H 0.09 1.48 7.58 -51.93 -0.39 1.09 16 9 C 0.15 2.56 5.31 -4.04 -0.02 2.54 16 10 N -0.75 -16.50 5.24 -59.91 -0.31 -16.81 16 11 C -0.25 -6.62 10.47 -15.06 -0.16 -6.78 16 12 H 0.09 2.61 8.06 -52.49 -0.42 2.19 16 13 C 0.01 0.24 5.50 -17.43 -0.10 0.14 16 14 N -0.93 -28.34 13.97 55.49 0.78 -27.56 16 15 Si 0.88 21.27 27.73 -169.99 -4.71 16.56 16 16 H -0.28 -6.59 7.11 56.52 0.40 -6.19 16 17 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 18 H -0.28 -6.49 6.52 56.52 0.37 -6.12 16 19 C -0.09 -1.11 1.96 -90.62 -0.18 -1.29 16 20 C -0.12 -1.35 4.85 -26.73 -0.13 -1.48 16 21 C -0.12 -1.17 5.92 -26.73 -0.16 -1.33 16 22 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 23 C -0.12 -1.29 5.92 -26.73 -0.16 -1.44 16 24 C -0.10 -1.30 3.72 -26.73 -0.10 -1.40 16 25 N -0.43 -5.48 2.40 -111.25 -0.27 -5.75 16 26 C 0.02 0.29 9.57 -16.75 -0.16 0.13 16 27 C -0.21 -2.83 10.86 -39.78 -0.43 -3.26 16 28 C -0.20 -2.46 10.86 -39.78 -0.43 -2.89 16 29 C -0.02 -0.25 11.39 -16.75 -0.19 -0.44 16 30 H 0.07 0.90 7.91 -51.93 -0.41 0.49 16 31 H 0.08 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.09 0.91 7.56 -51.93 -0.39 0.52 16 33 H 0.40 4.82 8.02 -40.82 -0.33 4.49 16 34 H 0.03 0.55 8.14 -51.93 -0.42 0.13 16 35 H 0.05 0.80 6.71 -51.94 -0.35 0.45 16 36 H 0.36 7.88 5.20 -40.82 -0.21 7.67 16 37 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 38 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 39 H 0.06 0.79 8.14 -51.93 -0.42 0.36 16 40 H 0.07 0.86 6.54 -51.93 -0.34 0.52 16 41 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 43 H 0.06 0.50 8.14 -51.93 -0.42 0.08 16 44 H 0.06 0.64 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.15 16 46 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 47 H 0.05 0.75 5.76 -51.93 -0.30 0.45 16 48 H 0.07 1.03 7.53 -51.93 -0.39 0.64 16 49 H 0.15 2.15 8.06 -52.48 -0.42 1.73 16 50 H 0.13 1.54 8.06 -52.49 -0.42 1.12 16 51 H 0.13 1.35 8.06 -52.49 -0.42 0.93 16 52 H 0.16 1.38 8.06 -52.49 -0.42 0.96 16 LS Contribution 400.07 15.07 6.03 6.03 Total: -1.00 -32.01 400.07 -10.16 -42.17 By element: Atomic # 1 Polarization: 23.15 SS G_CDS: -9.04 Total: 14.11 kcal Atomic # 6 Polarization: -8.10 SS G_CDS: -2.46 Total: -10.56 kcal Atomic # 7 Polarization: -59.67 SS G_CDS: -0.04 Total: -59.71 kcal Atomic # 8 Polarization: -8.67 SS G_CDS: 0.07 Total: -8.60 kcal Atomic # 14 Polarization: 21.27 SS G_CDS: -4.71 Total: 16.56 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.01 -10.16 -42.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496310624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.995 kcal (2) G-P(sol) polarization free energy of solvation -32.015 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.980 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.157 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.172 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds