Wall clock time and date at job start Tue Mar 31 2020 17:56:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 H 1.09003 * 109.47408 * 2 1 4 4 C 1.50698 * 109.47490 * 239.99612 * 2 1 3 5 5 O 1.21283 * 120.00472 * 240.00297 * 4 2 1 6 6 N 1.34777 * 119.99538 * 59.99635 * 4 2 1 7 7 C 1.46499 * 119.99665 * 179.72653 * 6 4 2 8 8 H 1.08999 * 109.47480 * 35.27807 * 7 6 4 9 9 C 1.52999 * 109.47493 * 155.28120 * 7 6 4 10 10 N 1.46510 * 109.46482 * 304.99988 * 9 7 6 11 11 C 1.36939 * 119.99628 * 179.97438 * 10 9 7 12 12 H 1.07993 * 120.00228 * 0.02562 * 11 10 9 13 13 C 1.38815 * 119.99496 * 179.97438 * 11 10 9 14 14 N 1.31624 * 119.99565 * 180.02562 * 13 11 10 15 15 Si 1.86789 * 120.00243 * 0.02562 * 13 11 10 16 16 H 1.48499 * 109.47744 * 89.99623 * 15 13 11 17 17 H 1.48510 * 109.47039 * 209.99876 * 15 13 11 18 18 H 1.48497 * 109.47226 * 329.99454 * 15 13 11 19 19 C 1.52999 * 109.47136 * 275.27771 * 7 6 4 20 20 C 1.53005 * 109.47303 * 180.02562 * 19 7 6 21 21 C 1.52999 * 109.47303 * 179.97438 * 20 19 7 22 22 C 1.53002 * 109.47179 * 60.00200 * 21 20 19 23 23 C 1.53005 * 109.46840 * 300.00084 * 22 21 20 24 24 C 1.52999 * 109.47303 * 59.99992 * 23 22 21 25 25 N 1.46509 * 109.47156 * 119.99512 * 2 1 3 26 26 C 1.36335 * 125.63291 * 59.69717 * 25 2 1 27 27 C 1.34856 * 108.22058 * 179.83131 * 26 25 2 28 28 C 1.40897 * 107.41042 * 0.41985 * 27 26 25 29 29 C 1.34848 * 107.41775 * 359.73918 * 28 27 26 30 30 H 1.08995 * 109.47139 * 180.02562 * 1 2 3 31 31 H 1.09003 * 109.47199 * 300.00376 * 1 2 3 32 32 H 1.09001 * 109.46983 * 60.00108 * 1 2 3 33 33 H 0.97001 * 120.00485 * 0.02562 * 6 4 2 34 34 H 1.08998 * 109.47318 * 64.99083 * 9 7 6 35 35 H 1.08988 * 109.47710 * 185.00333 * 9 7 6 36 36 H 0.97003 * 120.00089 * 359.97438 * 10 9 7 37 37 H 0.97000 * 120.00018 * 180.02562 * 14 13 11 38 38 H 1.09006 * 109.47500 * 299.99940 * 19 7 6 39 39 H 1.08999 * 109.47389 * 300.00082 * 20 19 7 40 40 H 1.09006 * 109.46974 * 59.99857 * 20 19 7 41 41 H 1.09000 * 109.47077 * 299.99800 * 21 20 19 42 42 H 1.09005 * 109.47368 * 180.02562 * 21 20 19 43 43 H 1.08995 * 109.47178 * 180.02562 * 22 21 20 44 44 H 1.09000 * 109.47442 * 59.99824 * 22 21 20 45 45 H 1.09006 * 109.46786 * 299.99624 * 23 22 21 46 46 H 1.08999 * 109.46630 * 180.02562 * 23 22 21 47 47 H 1.08996 * 109.46873 * 180.02562 * 24 23 22 48 48 H 1.08999 * 109.46965 * 59.99658 * 24 23 22 49 49 H 1.08006 * 125.89282 * 359.95982 * 26 25 2 50 50 H 1.07992 * 126.29534 * 180.15999 * 27 26 25 51 51 H 1.08001 * 126.28659 * 179.73307 * 28 27 26 52 52 H 1.08000 * 125.89183 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 8 2.7296 -1.6966 -1.1191 6 7 1.7067 -0.2501 -2.4545 7 6 2.2000 -0.9372 -3.6506 8 1 2.2365 -2.0105 -3.4641 9 6 1.2606 -0.6553 -4.8248 10 7 -0.1069 -1.0314 -4.4572 11 6 -1.1271 -0.8673 -5.3558 12 1 -0.9237 -0.4610 -6.3355 13 6 -2.4226 -1.2241 -5.0076 14 7 -3.4032 -1.0669 -5.8715 15 14 -2.7743 -1.9275 -3.3133 16 1 -3.0918 -0.8218 -2.3743 17 1 -3.9303 -2.8564 -3.3932 18 1 -1.5806 -2.6638 -2.8254 19 6 3.6037 -0.4302 -3.9875 20 6 4.1187 -1.1474 -5.2371 21 6 5.5222 -0.6399 -5.5744 22 6 6.4623 -0.9219 -4.4007 23 6 5.9472 -0.2048 -3.1511 24 6 4.5438 -0.7122 -2.8138 25 7 2.0183 -0.6905 1.1963 26 6 1.7560 -1.9866 1.5280 27 6 2.3799 -2.2586 2.6922 28 6 3.0441 -1.0844 3.0988 29 6 2.8055 -0.1416 2.1647 30 1 -0.3633 -1.0276 0.0005 31 1 -0.3634 0.5139 0.8900 32 1 -0.3633 0.5138 -0.8900 33 1 1.1493 0.5388 -2.5436 34 1 1.2921 0.4066 -5.0685 35 1 1.5768 -1.2365 -5.6909 36 1 -0.2895 -1.3967 -3.5773 37 1 -4.3085 -1.3159 -5.6281 38 1 3.5674 0.6431 -4.1742 39 1 4.1551 -2.2208 -5.0510 40 1 3.4492 -0.9461 -6.0735 41 1 5.4854 0.4334 -5.7608 42 1 5.8889 -1.1505 -6.4650 43 1 7.4619 -0.5600 -4.6409 44 1 6.4991 -1.9953 -4.2144 45 1 5.9105 0.8686 -3.3375 46 1 6.6172 -0.4053 -2.3151 47 1 4.1768 -0.2010 -1.9239 48 1 4.5806 -1.7856 -2.6276 49 1 1.1540 -2.6773 0.9559 50 1 2.3688 -3.2015 3.2184 51 1 3.6356 -0.9620 3.9941 52 1 3.1739 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001496310624.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:56:48 Heat of formation + Delta-G solvation = -6.298781 kcal Electronic energy + Delta-G solvation = -30499.572699 eV Core-core repulsion = 26691.823497 eV Total energy + Delta-G solvation = -3807.749202 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.02 seconds Orbital eigenvalues (eV) -42.39116 -41.14126 -39.25994 -37.36703 -35.50947 -35.23837 -33.34555 -32.34880 -31.56605 -30.25808 -29.59493 -28.85979 -26.03382 -25.08140 -23.79123 -22.94812 -22.42383 -21.56851 -21.31670 -20.82747 -20.47497 -19.79044 -18.61565 -17.96457 -17.17625 -17.02738 -16.40550 -15.95923 -15.70576 -15.36265 -15.15381 -14.98574 -14.93174 -14.83762 -14.59036 -14.52023 -14.43628 -13.96110 -13.68179 -13.48920 -13.34104 -13.18053 -13.09817 -13.01418 -12.94157 -12.92510 -12.79602 -12.58911 -12.39537 -12.18402 -11.99935 -11.89848 -11.82415 -11.43715 -11.20270 -11.04181 -10.94972 -10.80228 -9.99782 -9.52399 -9.32672 -9.00782 -8.04694 -5.37933 1.28540 1.31468 1.36354 1.42267 1.45686 1.82128 2.18910 2.27921 2.43943 3.27185 3.36733 3.50811 3.68292 3.76148 3.77744 3.86017 3.94065 4.05496 4.11437 4.23600 4.38041 4.42699 4.45790 4.47533 4.49843 4.55171 4.62958 4.65646 4.68685 4.72886 4.76353 4.79373 4.88014 4.98270 5.00450 5.10690 5.17688 5.24737 5.28265 5.31420 5.39736 5.40068 5.41932 5.44108 5.50828 5.63827 5.75295 6.11891 6.18628 6.30316 6.38696 6.55251 7.05052 7.12624 7.80110 7.98462 9.16675 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007250 B = 0.005493 C = 0.003307 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3861.347335 B = 5095.994762 C = 8466.045446 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C 0.119 3.881 3 H 0.158 0.842 4 C 0.500 3.500 5 O -0.551 6.551 6 N -0.705 5.705 7 C 0.152 3.848 8 H 0.061 0.939 9 C 0.150 3.850 10 N -0.755 5.755 11 C -0.229 4.229 12 H 0.063 0.937 13 C -0.055 4.055 14 N -0.980 5.980 15 Si 0.944 3.056 16 H -0.263 1.263 17 H -0.302 1.302 18 H -0.268 1.268 19 C -0.081 4.081 20 C -0.117 4.117 21 C -0.112 4.112 22 C -0.117 4.117 23 C -0.115 4.115 24 C -0.092 4.092 25 N -0.433 5.433 26 C -0.006 4.006 27 C -0.224 4.224 28 C -0.215 4.215 29 C -0.017 4.017 30 H 0.049 0.951 31 H 0.094 0.906 32 H 0.092 0.908 33 H 0.413 0.587 34 H 0.047 0.953 35 H 0.043 0.957 36 H 0.364 0.636 37 H 0.257 0.743 38 H 0.085 0.915 39 H 0.050 0.950 40 H 0.068 0.932 41 H 0.070 0.930 42 H 0.069 0.931 43 H 0.073 0.927 44 H 0.050 0.950 45 H 0.069 0.931 46 H 0.056 0.944 47 H 0.047 0.953 48 H 0.040 0.960 49 H 0.142 0.858 50 H 0.137 0.863 51 H 0.150 0.850 52 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 18.227 6.585 12.536 23.081 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.013 3.987 3 H 0.175 0.825 4 C 0.285 3.715 5 O -0.428 6.428 6 N -0.357 5.357 7 C 0.047 3.953 8 H 0.079 0.921 9 C 0.023 3.977 10 N -0.401 5.401 11 C -0.360 4.360 12 H 0.081 0.919 13 C -0.247 4.247 14 N -0.631 5.631 15 Si 0.772 3.228 16 H -0.189 1.189 17 H -0.229 1.229 18 H -0.194 1.194 19 C -0.101 4.101 20 C -0.155 4.155 21 C -0.150 4.150 22 C -0.155 4.155 23 C -0.153 4.153 24 C -0.130 4.130 25 N -0.109 5.109 26 C -0.136 4.136 27 C -0.248 4.248 28 C -0.240 4.240 29 C -0.146 4.146 30 H 0.068 0.932 31 H 0.113 0.887 32 H 0.111 0.889 33 H 0.250 0.750 34 H 0.065 0.935 35 H 0.061 0.939 36 H 0.197 0.803 37 H 0.066 0.934 38 H 0.104 0.896 39 H 0.069 0.931 40 H 0.087 0.913 41 H 0.089 0.911 42 H 0.087 0.913 43 H 0.092 0.908 44 H 0.069 0.931 45 H 0.087 0.913 46 H 0.075 0.925 47 H 0.065 0.935 48 H 0.059 0.941 49 H 0.159 0.841 50 H 0.155 0.845 51 H 0.167 0.833 52 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges 18.515 6.117 12.098 22.947 hybrid contribution -1.185 -0.756 0.550 1.509 sum 17.331 5.362 12.648 22.115 Atomic orbital electron populations 1.22185 0.90750 1.03471 1.05547 1.21426 0.97038 0.98425 0.81805 0.82499 1.20916 0.80209 0.84977 0.85377 1.90768 1.38311 1.26992 1.86737 1.45909 1.52787 1.32375 1.04638 1.21155 0.93555 0.96659 0.83910 0.92087 1.21130 0.82551 0.98932 0.95048 1.42683 1.04150 1.78119 1.15155 1.19023 0.87199 1.33896 0.95905 0.91885 1.25362 0.95616 1.02548 1.01207 1.69862 1.00381 1.55991 1.36841 0.85593 0.77091 0.78713 0.81436 1.18868 1.22880 1.19378 1.21438 0.91964 1.00928 0.95762 1.21620 0.97488 0.99508 0.96844 1.21488 0.93873 1.01654 0.97956 1.21530 0.99097 1.00028 0.94844 1.21533 0.95619 1.00352 0.97776 1.21438 0.94918 1.00088 0.96532 1.43840 1.39688 1.10177 1.17210 1.21664 1.06364 0.86663 0.98954 1.21080 1.05219 1.00147 0.98375 1.21123 1.07058 0.93623 1.02176 1.22299 1.00529 1.00955 0.90768 0.93167 0.88740 0.88890 0.75038 0.93506 0.93930 0.80311 0.93368 0.89650 0.93092 0.91344 0.91135 0.91269 0.90849 0.93098 0.91271 0.92497 0.93477 0.94112 0.84070 0.84481 0.83259 0.79309 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.17 9.13 71.98 0.66 -2.51 16 2 C 0.12 2.39 3.36 44.24 0.15 2.53 16 3 H 0.16 1.98 8.06 -2.39 -0.02 1.97 16 4 C 0.50 13.05 5.46 87.66 0.48 13.53 16 5 O -0.55 -18.45 12.58 -3.04 -0.04 -18.49 16 6 N -0.70 -17.47 4.30 -442.54 -1.90 -19.38 16 7 C 0.15 4.30 2.00 44.99 0.09 4.39 16 8 H 0.06 2.09 7.58 -2.39 -0.02 2.07 16 9 C 0.15 5.01 5.31 86.38 0.46 5.47 16 10 N -0.76 -32.48 5.24 -343.45 -1.80 -34.28 16 11 C -0.23 -12.33 10.47 84.03 0.88 -11.45 16 12 H 0.06 3.70 8.06 -2.91 -0.02 3.68 16 13 C -0.06 -3.14 5.50 84.86 0.47 -2.67 16 14 N -0.98 -60.90 13.97 21.65 0.30 -60.59 16 15 Si 0.94 44.09 27.73 68.60 1.90 46.00 16 16 H -0.26 -11.40 7.11 99.48 0.71 -10.69 16 17 H -0.30 -14.66 7.11 99.48 0.71 -13.95 16 18 H -0.27 -11.92 6.52 99.48 0.65 -11.27 16 19 C -0.08 -1.87 1.96 -10.79 -0.02 -1.89 16 20 C -0.12 -2.59 4.85 30.60 0.15 -2.45 16 21 C -0.11 -2.01 5.92 30.59 0.18 -1.83 16 22 C -0.12 -2.10 5.92 30.60 0.18 -1.92 16 23 C -0.12 -2.23 5.92 30.60 0.18 -2.05 16 24 C -0.09 -2.23 3.72 30.59 0.11 -2.11 16 25 N -0.43 -10.28 2.40 -505.90 -1.21 -11.49 16 26 C -0.01 -0.18 9.57 83.22 0.80 0.62 16 27 C -0.22 -5.87 10.86 22.14 0.24 -5.63 16 28 C -0.22 -4.93 10.86 22.14 0.24 -4.69 16 29 C -0.02 -0.35 11.39 83.21 0.95 0.59 16 30 H 0.05 1.20 7.91 -2.39 -0.02 1.19 16 31 H 0.09 1.54 8.14 -2.39 -0.02 1.52 16 32 H 0.09 1.70 7.56 -2.39 -0.02 1.68 16 33 H 0.41 8.84 8.02 -92.71 -0.74 8.09 16 34 H 0.05 1.49 8.14 -2.39 -0.02 1.47 16 35 H 0.04 1.49 6.71 -2.39 -0.02 1.47 16 36 H 0.36 15.43 5.20 -92.71 -0.48 14.94 16 37 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 38 H 0.09 1.77 8.14 -2.38 -0.02 1.75 16 39 H 0.05 1.26 8.14 -2.39 -0.02 1.24 16 40 H 0.07 1.56 6.54 -2.38 -0.02 1.55 16 41 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 42 H 0.07 1.14 8.14 -2.38 -0.02 1.12 16 43 H 0.07 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.05 1.01 8.14 -2.39 -0.02 0.99 16 45 H 0.07 1.19 8.14 -2.38 -0.02 1.17 16 46 H 0.06 1.10 8.14 -2.39 -0.02 1.08 16 47 H 0.05 1.21 5.76 -2.39 -0.01 1.20 16 48 H 0.04 1.22 7.53 -2.39 -0.02 1.20 16 49 H 0.14 4.13 8.06 -2.91 -0.02 4.11 16 50 H 0.14 3.23 8.06 -2.91 -0.02 3.20 16 51 H 0.15 2.74 8.06 -2.91 -0.02 2.71 16 52 H 0.19 2.53 8.06 -2.91 -0.02 2.51 16 Total: -1.00 -70.62 400.07 3.06 -67.56 By element: Atomic # 1 Polarization: 43.13 SS G_CDS: -0.38 Total: 42.74 kcal Atomic # 6 Polarization: -18.26 SS G_CDS: 6.19 Total: -12.07 kcal Atomic # 7 Polarization: -121.13 SS G_CDS: -4.61 Total: -125.74 kcal Atomic # 8 Polarization: -18.45 SS G_CDS: -0.04 Total: -18.49 kcal Atomic # 14 Polarization: 44.09 SS G_CDS: 1.90 Total: 46.00 kcal Total: -70.62 3.06 -67.56 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001496310624.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.262 kcal (2) G-P(sol) polarization free energy of solvation -70.619 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.356 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.058 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.561 kcal (6) G-S(sol) free energy of system = (1) + (5) -6.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.02 seconds