Wall clock time and date at job start Tue Mar 31 2020 18:00:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46506 * 109.47027 * 2 1 4 4 C 1.36445 * 124.85196 * 89.97625 * 3 2 1 5 5 C 1.50703 * 125.57078 * 0.02562 * 4 3 2 6 6 C 1.34485 * 108.85463 * 180.28597 * 4 3 2 7 7 C 1.46686 * 106.33418 * 359.60229 * 6 4 3 8 8 C 1.47260 * 126.94211 * 180.13446 * 7 6 4 9 9 O 1.21628 * 120.00043 * 180.31229 * 8 7 6 10 10 N 1.34777 * 120.00203 * 0.31447 * 8 7 6 11 11 C 1.47027 * 125.64720 * 0.02562 * 10 8 7 12 12 C 1.54318 * 107.27109 * 178.90861 * 11 10 8 13 13 C 1.55162 * 102.94174 * 337.80841 * 12 11 10 14 14 H 1.09002 * 111.00108 * 277.42709 * 13 12 11 15 15 C 1.52998 * 111.00163 * 153.61599 * 13 12 11 16 16 H 1.09005 * 109.47095 * 301.45290 * 15 13 12 17 17 C 1.52998 * 109.47173 * 181.45525 * 15 13 12 18 18 N 1.46498 * 109.47490 * 61.45328 * 15 13 12 19 19 C 1.36936 * 120.00127 * 205.00049 * 18 15 13 20 20 H 1.07998 * 120.00497 * 359.97438 * 19 18 15 21 21 C 1.38817 * 119.99691 * 180.02562 * 19 18 15 22 22 N 1.31617 * 120.00240 * 359.97438 * 21 19 18 23 23 Si 1.86801 * 119.99836 * 180.02562 * 21 19 18 24 24 H 1.48506 * 109.47134 * 359.97438 * 23 21 19 25 25 H 1.48498 * 109.47473 * 119.99344 * 23 21 19 26 26 H 1.48500 * 109.46932 * 239.99813 * 23 21 19 27 27 C 1.47422 * 125.64971 * 179.71893 * 10 8 7 28 28 C 1.34658 * 124.85158 * 270.00073 * 3 2 1 29 29 C 1.50709 * 125.79852 * 359.97438 * 28 3 2 30 30 H 1.09005 * 109.47477 * 299.99821 * 1 2 3 31 31 H 1.08995 * 109.47564 * 60.00170 * 1 2 3 32 32 H 1.09001 * 109.47132 * 180.02562 * 1 2 3 33 33 H 1.08996 * 109.47541 * 240.00049 * 2 1 3 34 34 H 1.09001 * 109.47343 * 119.99437 * 2 1 3 35 35 H 1.09002 * 109.47152 * 90.00110 * 5 4 3 36 36 H 1.09001 * 109.46980 * 330.00210 * 5 4 3 37 37 H 1.09004 * 109.47113 * 210.00191 * 5 4 3 38 38 H 1.08006 * 126.83007 * 179.73149 * 6 4 3 39 39 H 1.08996 * 109.88126 * 298.32829 * 11 10 8 40 40 H 1.09002 * 109.87749 * 59.33771 * 11 10 8 41 41 H 1.08999 * 110.72420 * 96.17232 * 12 11 10 42 42 H 1.09006 * 110.72196 * 219.27172 * 12 11 10 43 43 H 1.08999 * 109.47594 * 179.97438 * 17 15 13 44 44 H 1.09005 * 109.46919 * 299.99874 * 17 15 13 45 45 H 1.08998 * 109.47295 * 59.99618 * 17 15 13 46 46 H 0.97002 * 119.99660 * 24.99928 * 18 15 13 47 47 H 0.97001 * 119.99865 * 179.97438 * 22 21 19 48 48 H 1.08999 * 110.36604 * 323.00041 * 27 10 8 49 49 H 1.08997 * 110.36936 * 85.32387 * 27 10 8 50 50 H 1.08995 * 109.47087 * 90.00334 * 29 28 3 51 51 H 1.09000 * 109.46631 * 209.99932 * 29 28 3 52 52 H 1.08998 * 109.47357 * 330.00369 * 29 28 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.2777 2.1166 1.1197 5 6 2.1094 1.6405 2.5396 6 6 2.7028 3.3375 0.7491 7 6 2.7115 3.3436 -0.7177 8 6 3.1049 4.4584 -1.5958 9 8 3.0582 4.3265 -2.8040 10 7 3.5169 5.6247 -1.0607 11 6 3.6215 5.9187 0.3761 12 6 4.1596 7.3587 0.5111 13 6 4.8631 7.5960 -0.8514 14 1 5.8691 7.1764 -0.8498 15 6 4.8938 9.0853 -1.2006 16 1 3.8749 9.4708 -1.2378 17 6 5.5611 9.2757 -2.5642 18 7 5.6535 9.8108 -0.1796 19 6 5.4136 11.1417 0.0356 20 1 4.6646 11.6567 -0.5477 21 6 6.1339 11.8293 1.0027 22 7 7.0471 11.2019 1.7133 23 14 5.8062 13.6447 1.2967 24 1 4.7391 14.1107 0.3750 25 1 5.3707 13.8479 2.7018 26 1 7.0485 14.4188 1.0466 27 6 3.9432 6.8149 -1.8190 28 6 2.2748 2.1068 -1.1051 29 6 2.1088 1.6358 -2.5270 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5138 -0.8899 32 1 -0.3633 -1.0277 0.0005 33 1 1.8933 -0.5138 -0.8899 34 1 1.8933 -0.5137 0.8900 35 1 3.0378 1.1835 2.8821 36 1 1.3051 0.9061 2.5836 37 1 1.8634 2.4875 3.1801 38 1 2.9840 4.1508 1.4017 39 1 2.6390 5.8448 0.8421 40 1 4.3095 5.2176 0.8487 41 1 3.3410 8.0648 0.6505 42 1 4.8718 7.4289 1.3333 43 1 5.5826 10.3366 -2.8133 44 1 6.5801 8.8901 -2.5270 45 1 4.9959 8.7359 -3.3239 46 1 6.3265 9.3484 0.3441 47 1 7.5506 11.6825 2.3888 48 1 4.4947 6.5187 -2.7113 49 1 3.0792 7.4217 -2.0900 50 1 1.0998 1.8645 -2.8701 51 1 2.8330 2.1430 -3.1645 52 1 2.2736 0.5594 -2.5748 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501058727.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:00:01 Heat of formation + Delta-G solvation = 16.767522 kcal Electronic energy + Delta-G solvation = -29166.195201 eV Core-core repulsion = 25359.446229 eV Total energy + Delta-G solvation = -3806.748972 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.69665 -39.55568 -37.48704 -35.13654 -34.39764 -32.85126 -32.35336 -30.50783 -29.82810 -29.34840 -28.91544 -27.32764 -25.46920 -24.25614 -23.87079 -22.91902 -21.41375 -21.10246 -19.84474 -19.53040 -17.98558 -17.18674 -16.90934 -16.14584 -15.95274 -15.58709 -15.21735 -14.68754 -14.49672 -13.98339 -13.76168 -13.66621 -13.54481 -13.37386 -13.29208 -13.21423 -13.03608 -12.92979 -12.70140 -12.43947 -12.38072 -12.31535 -12.09473 -11.96349 -11.85024 -11.72129 -11.52154 -11.44602 -11.07266 -10.86537 -10.62762 -10.49643 -10.23176 -10.13100 -9.79357 -9.62836 -9.56693 -8.88121 -8.72654 -8.42471 -8.01956 -6.91929 -5.73599 -3.01388 1.72494 2.27074 2.53952 3.33785 3.45086 3.51360 3.53006 3.67376 4.21056 4.41956 4.51429 4.59616 4.65293 4.69690 4.82290 4.92062 4.98494 5.09698 5.10490 5.13589 5.25225 5.26753 5.31405 5.43189 5.48960 5.49737 5.54672 5.58835 5.63021 5.68220 5.78787 5.85007 5.87039 5.96191 6.04506 6.07929 6.16050 6.19435 6.32330 6.42731 6.51088 6.58800 6.70583 6.72185 6.74219 6.94239 6.99630 7.10829 7.16982 7.74259 7.83116 8.45132 8.49782 9.56647 10.14667 10.49863 11.49198 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.021416 B = 0.002340 C = 0.002165 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1307.115532 B =11962.212725 C =12927.126355 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.094 3.906 3 N -0.438 5.438 4 C 0.006 3.994 5 C -0.083 4.083 6 C -0.171 4.171 7 C -0.227 4.227 8 C 0.604 3.396 9 O -0.559 6.559 10 N -0.610 5.610 11 C 0.099 3.901 12 C -0.118 4.118 13 C -0.102 4.102 14 H 0.079 0.921 15 C 0.185 3.815 16 H 0.049 0.951 17 C -0.167 4.167 18 N -0.722 5.722 19 C -0.232 4.232 20 H 0.070 0.930 21 C -0.015 4.015 22 N -0.933 5.933 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.293 1.293 27 C 0.117 3.883 28 C 0.103 3.897 29 C -0.091 4.091 30 H 0.063 0.937 31 H 0.064 0.936 32 H 0.074 0.926 33 H 0.090 0.910 34 H 0.090 0.910 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.081 0.919 38 H 0.155 0.845 39 H 0.067 0.933 40 H 0.068 0.932 41 H 0.078 0.922 42 H 0.085 0.915 43 H 0.053 0.947 44 H 0.046 0.954 45 H 0.038 0.962 46 H 0.383 0.617 47 H 0.253 0.747 48 H 0.075 0.925 49 H 0.066 0.934 50 H 0.074 0.926 51 H 0.101 0.899 52 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.433 -25.679 -1.115 28.552 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.228 4.228 2 C -0.028 4.028 3 N -0.116 5.116 4 C -0.101 4.101 5 C -0.140 4.140 6 C -0.195 4.195 7 C -0.237 4.237 8 C 0.396 3.604 9 O -0.440 6.440 10 N -0.343 5.343 11 C -0.024 4.024 12 C -0.155 4.155 13 C -0.122 4.122 14 H 0.097 0.903 15 C 0.075 3.925 16 H 0.067 0.933 17 C -0.227 4.227 18 N -0.363 5.363 19 C -0.364 4.364 20 H 0.088 0.912 21 C -0.211 4.211 22 N -0.582 5.582 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.220 1.220 27 C -0.006 4.006 28 C -0.014 4.014 29 C -0.148 4.148 30 H 0.082 0.918 31 H 0.083 0.917 32 H 0.093 0.907 33 H 0.109 0.891 34 H 0.109 0.891 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.100 0.900 38 H 0.173 0.827 39 H 0.085 0.915 40 H 0.086 0.914 41 H 0.097 0.903 42 H 0.104 0.896 43 H 0.072 0.928 44 H 0.065 0.935 45 H 0.057 0.943 46 H 0.217 0.783 47 H 0.063 0.937 48 H 0.093 0.907 49 H 0.085 0.915 50 H 0.093 0.907 51 H 0.119 0.881 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -12.677 -25.966 -1.731 28.947 hybrid contribution 0.169 0.917 0.541 1.078 sum -12.508 -25.049 -1.189 28.023 Atomic orbital electron populations 1.22162 0.94209 1.02976 1.03405 1.21851 0.95677 0.80832 1.04392 1.43633 1.51047 1.11767 1.05124 1.20235 1.08693 0.92649 0.88568 1.20319 1.01964 1.01991 0.89770 1.22380 1.06647 0.96983 0.93470 1.20023 1.15713 0.94680 0.93238 1.16976 0.76319 0.80500 0.86612 1.90706 1.56488 1.82160 1.14653 1.48256 1.65398 1.12754 1.07870 1.22410 1.00553 0.97737 0.81692 1.22607 1.00902 0.93646 0.98394 1.22610 0.98469 0.97070 0.94081 0.90272 1.20130 0.95339 0.88002 0.89036 0.93321 1.22480 1.00483 1.01330 0.98419 1.42375 1.44618 1.07951 1.41359 1.19272 1.16223 0.85960 1.14917 0.91201 1.24713 0.99117 0.97990 0.99263 1.69667 1.26930 1.35277 1.26332 0.86158 0.77265 0.85523 0.77510 1.20617 1.21973 1.22014 1.22207 0.97866 0.85239 0.95267 1.20207 1.01047 0.91053 0.89046 1.20542 1.04173 1.00406 0.89717 0.91762 0.91704 0.90698 0.89133 0.89140 0.91141 0.91998 0.89991 0.82719 0.91495 0.91362 0.90339 0.89614 0.92814 0.93484 0.94345 0.78299 0.93671 0.90664 0.91544 0.90715 0.88087 0.92212 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.83 10.24 37.15 0.38 -0.45 16 2 C 0.09 0.53 6.09 -4.04 -0.02 0.51 16 3 N -0.44 -4.17 2.69 -107.96 -0.29 -4.46 16 4 C 0.01 0.06 6.85 -81.86 -0.56 -0.50 16 5 C -0.08 -0.54 9.81 36.01 0.35 -0.19 16 6 C -0.17 -2.05 9.28 -37.50 -0.35 -2.39 16 7 C -0.23 -3.20 6.23 -103.35 -0.64 -3.84 16 8 C 0.60 9.94 7.84 -12.59 -0.10 9.84 16 9 O -0.56 -10.42 15.07 5.25 0.08 -10.34 16 10 N -0.61 -9.43 3.33 -171.99 -0.57 -10.00 16 11 C 0.10 1.33 5.00 -3.06 -0.02 1.31 16 12 C -0.12 -1.81 6.13 -24.90 -0.15 -1.96 16 13 C -0.10 -1.69 2.61 -88.59 -0.23 -1.92 16 14 H 0.08 1.35 8.14 -51.93 -0.42 0.92 16 15 C 0.19 3.59 2.41 -67.93 -0.16 3.43 16 16 H 0.05 0.97 8.04 -51.93 -0.42 0.55 16 17 C -0.17 -3.06 9.34 37.16 0.35 -2.71 16 18 N -0.72 -17.46 4.82 -53.43 -0.26 -17.72 16 19 C -0.23 -6.31 9.93 -15.06 -0.15 -6.46 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.45 16 21 C -0.02 -0.43 5.50 -17.43 -0.10 -0.52 16 22 N -0.93 -27.76 13.06 55.49 0.72 -27.04 16 23 Si 0.90 22.29 29.55 -169.99 -5.02 17.26 16 24 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 25 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 26 H -0.29 -7.31 7.11 56.52 0.40 -6.91 16 27 C 0.12 1.84 5.56 -2.65 -0.01 1.82 16 28 C 0.10 1.23 6.89 -81.88 -0.56 0.66 16 29 C -0.09 -0.92 9.52 36.01 0.34 -0.58 16 30 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 31 H 0.06 0.39 8.14 -51.93 -0.42 -0.04 16 32 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 33 H 0.09 0.42 6.87 -51.93 -0.36 0.06 16 34 H 0.09 0.38 7.52 -51.93 -0.39 -0.01 16 35 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 36 H 0.06 0.32 7.60 -51.93 -0.39 -0.08 16 37 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 38 H 0.16 1.68 4.79 -52.48 -0.25 1.43 16 39 H 0.07 0.82 6.99 -51.93 -0.36 0.46 16 40 H 0.07 0.86 6.85 -51.93 -0.36 0.50 16 41 H 0.08 1.27 8.04 -51.93 -0.42 0.86 16 42 H 0.09 1.38 8.14 -51.93 -0.42 0.96 16 43 H 0.05 1.05 8.14 -51.93 -0.42 0.63 16 44 H 0.05 0.87 8.14 -51.93 -0.42 0.45 16 45 H 0.04 0.60 7.46 -51.93 -0.39 0.22 16 46 H 0.38 9.87 7.80 -40.82 -0.32 9.55 16 47 H 0.25 7.33 8.31 -40.82 -0.34 6.99 16 48 H 0.07 1.22 7.97 -51.93 -0.41 0.80 16 49 H 0.07 1.04 8.00 -51.93 -0.42 0.62 16 50 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 51 H 0.10 1.25 6.47 -51.93 -0.34 0.91 16 52 H 0.06 0.44 6.92 -51.93 -0.36 0.08 16 LS Contribution 407.92 15.07 6.15 6.15 Total: -1.00 -33.02 407.92 -9.78 -42.80 By element: Atomic # 1 Polarization: 16.25 SS G_CDS: -8.95 Total: 7.30 kcal Atomic # 6 Polarization: -2.31 SS G_CDS: -1.64 Total: -3.95 kcal Atomic # 7 Polarization: -58.83 SS G_CDS: -0.40 Total: -59.22 kcal Atomic # 8 Polarization: -10.42 SS G_CDS: 0.08 Total: -10.34 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.26 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.02 -9.78 -42.80 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501058727.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.572 kcal (2) G-P(sol) polarization free energy of solvation -33.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 26.550 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.782 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.805 kcal (6) G-S(sol) free energy of system = (1) + (5) 16.768 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds