Wall clock time and date at job start Tue Mar 31 2020 17:34:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47295 * 316.18542 * 3 2 1 5 5 C 1.46843 * 110.99683 * 45.79049 * 4 3 2 6 6 C 1.53039 * 109.52242 * 185.83918 * 5 4 3 7 7 C 1.53123 * 109.27709 * 300.81880 * 6 5 4 8 8 C 1.50696 * 109.52164 * 177.55620 * 7 6 5 9 9 O 1.21284 * 120.00166 * 273.10268 * 8 7 6 10 10 N 1.34783 * 119.99962 * 93.10582 * 8 7 6 11 11 C 1.47022 * 125.64639 * 184.73679 * 10 8 7 12 12 C 1.54314 * 107.27309 * 180.96536 * 11 10 8 13 13 C 1.55161 * 102.86346 * 22.52446 * 12 11 10 14 14 H 1.08993 * 111.03804 * 82.39159 * 13 12 11 15 15 C 1.53003 * 111.00202 * 206.23258 * 13 12 11 16 16 H 1.08990 * 109.47394 * 52.19399 * 15 13 12 17 17 C 1.52999 * 109.46680 * 172.19809 * 15 13 12 18 18 N 1.46498 * 109.46923 * 292.19280 * 15 13 12 19 19 C 1.36941 * 120.00004 * 155.00608 * 18 15 13 20 20 H 1.07996 * 119.99738 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99930 * 180.02562 * 19 18 15 22 22 N 1.31621 * 119.99695 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00543 * 23 21 19 25 25 H 1.48496 * 109.47024 * 210.00311 * 23 21 19 26 26 H 1.48501 * 109.47121 * 330.00443 * 23 21 19 27 27 C 1.47422 * 125.64515 * 5.03798 * 10 8 7 28 28 C 1.53122 * 109.15836 * 57.65543 * 7 6 5 29 29 C 1.46852 * 110.99858 * 169.99837 * 4 3 2 30 30 H 4.40887 * 5.52151 * 179.97438 * 4 1 2 31 31 H 1.09002 * 109.47030 * 76.19106 * 3 2 1 32 32 H 1.09002 * 109.47120 * 196.18235 * 3 2 1 33 33 H 1.08995 * 109.46829 * 305.85168 * 5 4 3 34 34 H 1.09004 * 109.46534 * 65.82376 * 5 4 3 35 35 H 1.09000 * 109.50675 * 180.87866 * 6 5 4 36 36 H 1.08999 * 109.53749 * 60.78099 * 6 5 4 37 37 H 1.08996 * 109.57656 * 297.71528 * 7 6 5 38 38 H 1.08997 * 109.88276 * 300.50742 * 11 10 8 39 39 H 1.08997 * 109.88391 * 61.67902 * 11 10 8 40 40 H 1.09004 * 110.92546 * 264.11048 * 12 11 10 41 41 H 1.09004 * 110.59506 * 140.78647 * 12 11 10 42 42 H 1.09008 * 109.46851 * 179.97438 * 17 15 13 43 43 H 1.08998 * 109.47348 * 299.99243 * 17 15 13 44 44 H 1.09004 * 109.47633 * 59.99820 * 17 15 13 45 45 H 0.97005 * 120.00327 * 335.00206 * 18 15 13 46 46 H 0.97000 * 119.99790 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36841 * 274.67637 * 27 10 8 48 48 H 1.08993 * 110.36572 * 36.99862 * 27 10 8 49 49 H 1.09003 * 109.50256 * 182.39917 * 28 7 6 50 50 H 1.09002 * 109.53318 * 62.30501 * 28 7 6 51 51 H 1.08995 * 109.46285 * 294.17841 * 29 4 3 52 52 H 1.08997 * 109.45949 * 54.15809 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.9985 0.9589 5 6 2.4109 -2.2670 0.8138 6 6 2.8439 -3.2330 1.9191 7 6 4.3531 -3.4720 1.8188 8 6 4.7955 -4.3752 2.9411 9 8 5.0931 -3.9031 4.0180 10 7 4.8607 -5.7075 2.7481 11 6 5.1789 -6.7078 3.7775 12 6 5.1611 -8.0909 3.0934 13 6 5.3993 -7.7410 1.6007 14 1 6.4609 -7.6039 1.3955 15 6 4.8002 -8.8101 0.6845 16 1 3.7577 -8.9775 0.9548 17 6 4.8811 -8.3395 -0.7691 18 7 5.5506 -10.0591 0.8359 19 6 4.9507 -11.2570 0.5523 20 1 3.9242 -11.2809 0.2176 21 6 5.6616 -12.4406 0.6963 22 7 5.0850 -13.5919 0.4233 23 14 7.4369 -12.3992 1.2760 24 1 7.4758 -12.4861 2.7579 25 1 8.1747 -13.5486 0.6933 26 1 8.0713 -11.1302 0.8376 27 6 4.6307 -6.4025 1.4685 28 6 5.0825 -2.1298 1.9243 29 6 4.5846 -1.1959 0.8189 30 1 -1.0498 -0.0001 0.0003 31 1 3.0094 -0.2445 -0.9980 32 1 3.0089 0.9878 0.2864 33 1 1.3392 -2.0837 0.8912 34 1 2.6350 -2.7044 -0.1591 35 1 2.3170 -4.1799 1.8019 36 1 2.6074 -2.8030 2.8923 37 1 4.5861 -3.9391 0.8620 38 1 6.1669 -6.5105 4.1933 39 1 4.4290 -6.6778 4.5680 40 1 4.1952 -8.5784 3.2259 41 1 5.9664 -8.7182 3.4758 42 1 4.4547 -9.1013 -1.4218 43 1 4.3227 -7.4102 -0.8817 44 1 5.9237 -8.1720 -1.0394 45 1 6.4726 -10.0377 1.1368 46 1 5.5819 -14.4189 0.5235 47 1 3.5666 -6.5887 1.3238 48 1 5.0300 -5.8159 0.6412 49 1 6.1549 -2.2886 1.8109 50 1 4.8819 -1.6815 2.8974 51 1 4.7985 -1.6383 -0.1540 52 1 5.0916 -0.2345 0.9002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501090881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:19 Heat of formation + Delta-G solvation = 33.885750 kcal Electronic energy + Delta-G solvation = -29144.546502 eV Core-core repulsion = 25338.539832 eV Total energy + Delta-G solvation = -3806.006670 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.85 seconds Orbital eigenvalues (eV) -40.60521 -39.17326 -37.85389 -35.35410 -34.89672 -32.65960 -32.33049 -31.14899 -30.79190 -29.79891 -27.82102 -27.52363 -24.89052 -23.95347 -23.56229 -22.57501 -21.40920 -20.30406 -19.91890 -19.08304 -18.48883 -17.68597 -17.20515 -16.66871 -16.11594 -15.57844 -15.39664 -15.21847 -14.81203 -14.38877 -14.02471 -14.00501 -13.66535 -13.61473 -13.32002 -13.28869 -13.08815 -12.90939 -12.68417 -12.54138 -12.41103 -12.18160 -11.96428 -11.73420 -11.58655 -11.45462 -11.07832 -11.01782 -10.96039 -10.85131 -10.73420 -10.61959 -10.52089 -10.50179 -10.31384 -10.02663 -9.71625 -9.62275 -8.98525 -8.74803 -8.66594 -7.32795 -5.81195 -3.17046 2.30073 2.46275 2.55368 2.91434 3.33652 3.36190 3.42369 3.61640 3.94360 4.22438 4.44263 4.49593 4.54326 4.56545 4.72515 4.83450 4.88646 4.94345 4.96770 5.03040 5.10928 5.17620 5.24048 5.28536 5.36122 5.38007 5.45729 5.48206 5.48806 5.51941 5.57771 5.62040 5.69062 5.76875 5.83236 5.87249 5.89120 6.02804 6.08010 6.11343 6.24973 6.29456 6.35320 6.42965 6.56591 6.64199 6.71001 6.92931 7.22318 7.48045 7.94307 8.11440 8.37678 9.15844 9.88412 10.07707 11.37068 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.002361 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.481242 B =11856.368761 C =12625.602023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.194 4.194 2 C -0.186 4.186 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.056 3.944 6 C -0.102 4.102 7 C -0.105 4.105 8 C 0.533 3.467 9 O -0.544 6.544 10 N -0.617 5.617 11 C 0.106 3.894 12 C -0.120 4.120 13 C -0.107 4.107 14 H 0.080 0.920 15 C 0.190 3.810 16 H 0.059 0.941 17 C -0.168 4.168 18 N -0.746 5.746 19 C -0.242 4.242 20 H 0.090 0.910 21 C 0.005 3.995 22 N -0.933 5.933 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.292 1.292 26 H -0.278 1.278 27 C 0.107 3.893 28 C -0.100 4.100 29 C 0.057 3.943 30 H 0.218 0.782 31 H 0.059 0.941 32 H 0.099 0.901 33 H 0.083 0.917 34 H 0.038 0.962 35 H 0.074 0.926 36 H 0.079 0.921 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.082 0.918 41 H 0.082 0.918 42 H 0.059 0.941 43 H 0.039 0.961 44 H 0.045 0.955 45 H 0.360 0.640 46 H 0.259 0.741 47 H 0.073 0.927 48 H 0.075 0.925 49 H 0.072 0.928 50 H 0.086 0.914 51 H 0.038 0.962 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.167 27.138 -0.662 27.464 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.186 4.186 3 C 0.036 3.964 4 N -0.260 5.260 5 C -0.072 4.072 6 C -0.140 4.140 7 C -0.126 4.126 8 C 0.322 3.678 9 O -0.421 6.421 10 N -0.350 5.350 11 C -0.017 4.017 12 C -0.157 4.157 13 C -0.127 4.127 14 H 0.099 0.901 15 C 0.080 3.920 16 H 0.076 0.924 17 C -0.228 4.228 18 N -0.389 5.389 19 C -0.371 4.371 20 H 0.108 0.892 21 C -0.191 4.191 22 N -0.581 5.581 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.218 1.218 26 H -0.204 1.204 27 C -0.016 4.016 28 C -0.138 4.138 29 C -0.070 4.070 30 H 0.235 0.765 31 H 0.076 0.924 32 H 0.117 0.883 33 H 0.102 0.898 34 H 0.056 0.944 35 H 0.092 0.908 36 H 0.098 0.902 37 H 0.106 0.894 38 H 0.083 0.917 39 H 0.083 0.917 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.078 0.922 43 H 0.058 0.942 44 H 0.064 0.936 45 H 0.193 0.807 46 H 0.069 0.931 47 H 0.092 0.908 48 H 0.093 0.907 49 H 0.090 0.910 50 H 0.105 0.895 51 H 0.057 0.943 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -4.239 27.444 0.349 27.772 hybrid contribution 1.299 -0.600 -0.561 1.537 sum -2.939 26.845 -0.212 27.006 Atomic orbital electron populations 1.24954 0.95956 1.00067 1.00236 1.22788 0.94240 1.00829 1.00740 1.19079 0.84840 0.97555 0.94945 1.62062 1.04266 1.09308 1.50393 1.22146 0.99078 0.88746 0.97187 1.21493 0.92819 0.99252 1.00458 1.21372 0.97515 0.95949 0.97774 1.20240 0.77266 0.80902 0.89434 1.90687 1.49520 1.74517 1.27381 1.48628 1.69236 1.05379 1.11778 1.22013 1.00815 0.87757 0.91076 1.22642 1.03943 0.94567 0.94594 1.22707 1.00224 0.93892 0.95836 0.90118 1.20107 0.95581 0.84779 0.91484 0.92351 1.22476 1.00749 0.99689 0.99892 1.42739 1.12230 1.01999 1.81921 1.19033 0.97889 0.82373 1.37846 0.89215 1.24667 0.97649 0.95220 1.01566 1.69697 1.36503 0.96949 1.54961 0.86577 0.86469 0.76880 0.78726 1.21078 1.21826 1.20381 1.22429 1.00577 0.93220 0.85373 1.21463 0.99039 0.92869 1.00426 1.22124 0.87112 1.00149 0.97619 0.76505 0.92361 0.88264 0.89821 0.94418 0.90786 0.90203 0.89393 0.91688 0.91655 0.89892 0.89893 0.92200 0.94199 0.93566 0.80681 0.93054 0.90838 0.90693 0.90985 0.89504 0.94350 0.89950 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.40 19.02 29.55 0.56 -0.83 16 2 C -0.19 -1.52 11.51 -37.12 -0.43 -1.94 16 3 C 0.16 1.12 5.77 -6.61 -0.04 1.08 16 4 N -0.54 -4.39 4.79 -238.18 -1.14 -5.53 16 5 C 0.06 0.47 5.07 -3.83 -0.02 0.45 16 6 C -0.10 -0.94 5.36 -26.65 -0.14 -1.09 16 7 C -0.10 -1.03 2.27 -91.65 -0.21 -1.23 16 8 C 0.53 6.99 6.87 -10.98 -0.08 6.91 16 9 O -0.54 -9.04 16.52 5.55 0.09 -8.94 16 10 N -0.62 -7.74 3.33 -170.53 -0.57 -8.30 16 11 C 0.11 1.37 6.87 -3.07 -0.02 1.35 16 12 C -0.12 -1.62 6.28 -24.90 -0.16 -1.78 16 13 C -0.11 -1.45 2.65 -88.47 -0.23 -1.68 16 14 H 0.08 1.12 8.14 -51.93 -0.42 0.70 16 15 C 0.19 3.20 2.42 -67.93 -0.16 3.03 16 16 H 0.06 1.03 8.02 -51.93 -0.42 0.61 16 17 C -0.17 -2.59 9.27 37.16 0.34 -2.24 16 18 N -0.75 -16.19 4.78 -53.43 -0.26 -16.45 16 19 C -0.24 -6.43 10.41 -15.06 -0.16 -6.59 16 20 H 0.09 2.58 8.06 -52.49 -0.42 2.15 16 21 C 0.00 0.14 5.50 -17.43 -0.10 0.04 16 22 N -0.93 -28.58 13.97 55.49 0.78 -27.80 16 23 Si 0.88 21.45 27.74 -169.99 -4.71 16.73 16 24 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.28 -6.33 6.52 56.52 0.37 -5.96 16 27 C 0.11 1.20 4.93 -2.53 -0.01 1.19 16 28 C -0.10 -0.91 5.05 -26.65 -0.13 -1.05 16 29 C 0.06 0.42 5.42 -3.83 -0.02 0.39 16 30 H 0.22 0.88 7.80 -54.10 -0.42 0.46 16 31 H 0.06 0.35 8.08 -51.93 -0.42 -0.07 16 32 H 0.10 0.57 8.14 -51.93 -0.42 0.14 16 33 H 0.08 0.73 6.36 -51.93 -0.33 0.40 16 34 H 0.04 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.65 8.14 -51.93 -0.42 0.22 16 36 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 37 H 0.09 0.76 6.42 -51.93 -0.33 0.43 16 38 H 0.06 0.86 8.14 -51.93 -0.42 0.44 16 39 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 40 H 0.08 1.17 7.99 -51.93 -0.42 0.76 16 41 H 0.08 1.17 8.14 -51.93 -0.42 0.75 16 42 H 0.06 1.05 8.14 -51.92 -0.42 0.63 16 43 H 0.04 0.48 7.23 -51.93 -0.38 0.11 16 44 H 0.05 0.71 8.14 -51.93 -0.42 0.28 16 45 H 0.36 7.80 5.66 -40.82 -0.23 7.56 16 46 H 0.26 7.60 8.31 -40.82 -0.34 7.26 16 47 H 0.07 0.78 8.04 -51.93 -0.42 0.36 16 48 H 0.07 0.73 6.76 -51.93 -0.35 0.38 16 49 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 50 H 0.09 0.96 7.78 -51.93 -0.40 0.55 16 51 H 0.04 0.25 8.14 -51.93 -0.42 -0.17 16 52 H 0.08 0.49 8.12 -51.93 -0.42 0.07 16 LS Contribution 408.87 15.07 6.16 6.16 Total: -1.00 -32.60 408.87 -9.85 -42.45 By element: Atomic # 1 Polarization: 14.87 SS G_CDS: -9.20 Total: 5.67 kcal Atomic # 6 Polarization: -2.99 SS G_CDS: -1.00 Total: -3.99 kcal Atomic # 7 Polarization: -56.89 SS G_CDS: -1.19 Total: -58.08 kcal Atomic # 8 Polarization: -9.04 SS G_CDS: 0.09 Total: -8.94 kcal Atomic # 14 Polarization: 21.45 SS G_CDS: -4.71 Total: 16.73 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -32.60 -9.85 -42.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501090881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.339 kcal (2) G-P(sol) polarization free energy of solvation -32.599 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 43.739 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.453 kcal (6) G-S(sol) free energy of system = (1) + (5) 33.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.86 seconds