Wall clock time and date at job start Tue Mar 31 2020 17:34:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17404 * 1 3 3 C 1.47195 * 179.97438 * 2 1 4 4 N 1.46900 * 109.47295 * 316.18542 * 3 2 1 5 5 C 1.46843 * 110.99683 * 45.79049 * 4 3 2 6 6 C 1.53039 * 109.52242 * 185.83918 * 5 4 3 7 7 C 1.53123 * 109.27709 * 300.81880 * 6 5 4 8 8 C 1.50696 * 109.52164 * 177.55620 * 7 6 5 9 9 O 1.21284 * 120.00166 * 273.10268 * 8 7 6 10 10 N 1.34783 * 119.99962 * 93.10582 * 8 7 6 11 11 C 1.47022 * 125.64639 * 184.73679 * 10 8 7 12 12 C 1.54314 * 107.27309 * 180.96536 * 11 10 8 13 13 C 1.55161 * 102.86346 * 22.52446 * 12 11 10 14 14 H 1.08993 * 111.03804 * 82.39159 * 13 12 11 15 15 C 1.53003 * 111.00202 * 206.23258 * 13 12 11 16 16 H 1.08990 * 109.47394 * 52.19399 * 15 13 12 17 17 C 1.52999 * 109.46680 * 172.19809 * 15 13 12 18 18 N 1.46498 * 109.46923 * 292.19280 * 15 13 12 19 19 C 1.36941 * 120.00004 * 155.00608 * 18 15 13 20 20 H 1.07996 * 119.99738 * 359.97438 * 19 18 15 21 21 C 1.38816 * 119.99930 * 180.02562 * 19 18 15 22 22 N 1.31621 * 119.99695 * 180.02562 * 21 19 18 23 23 Si 1.86800 * 120.00146 * 359.97438 * 21 19 18 24 24 H 1.48497 * 109.46991 * 90.00543 * 23 21 19 25 25 H 1.48496 * 109.47024 * 210.00311 * 23 21 19 26 26 H 1.48501 * 109.47121 * 330.00443 * 23 21 19 27 27 C 1.47422 * 125.64515 * 5.03798 * 10 8 7 28 28 C 1.53122 * 109.15836 * 57.65543 * 7 6 5 29 29 C 1.46852 * 110.99858 * 169.99837 * 4 3 2 30 30 H 4.40887 * 5.52151 * 179.97438 * 4 1 2 31 31 H 1.09002 * 109.47030 * 76.19106 * 3 2 1 32 32 H 1.09002 * 109.47120 * 196.18235 * 3 2 1 33 33 H 1.08995 * 109.46829 * 305.85168 * 5 4 3 34 34 H 1.09004 * 109.46534 * 65.82376 * 5 4 3 35 35 H 1.09000 * 109.50675 * 180.87866 * 6 5 4 36 36 H 1.08999 * 109.53749 * 60.78099 * 6 5 4 37 37 H 1.08996 * 109.57656 * 297.71528 * 7 6 5 38 38 H 1.08997 * 109.88276 * 300.50742 * 11 10 8 39 39 H 1.08997 * 109.88391 * 61.67902 * 11 10 8 40 40 H 1.09004 * 110.92546 * 264.11048 * 12 11 10 41 41 H 1.09004 * 110.59506 * 140.78647 * 12 11 10 42 42 H 1.09008 * 109.46851 * 179.97438 * 17 15 13 43 43 H 1.08998 * 109.47348 * 299.99243 * 17 15 13 44 44 H 1.09004 * 109.47633 * 59.99820 * 17 15 13 45 45 H 0.97005 * 120.00327 * 335.00206 * 18 15 13 46 46 H 0.97000 * 119.99790 * 179.97438 * 22 21 19 47 47 H 1.08999 * 110.36841 * 274.67637 * 27 10 8 48 48 H 1.08993 * 110.36572 * 36.99862 * 27 10 8 49 49 H 1.09003 * 109.50256 * 182.39917 * 28 7 6 50 50 H 1.09002 * 109.53318 * 62.30501 * 28 7 6 51 51 H 1.08995 * 109.46285 * 294.17841 * 29 4 3 52 52 H 1.08997 * 109.45949 * 54.15809 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1361 -0.9985 0.9589 5 6 2.4109 -2.2670 0.8138 6 6 2.8439 -3.2330 1.9191 7 6 4.3531 -3.4720 1.8188 8 6 4.7955 -4.3752 2.9411 9 8 5.0931 -3.9031 4.0180 10 7 4.8607 -5.7075 2.7481 11 6 5.1789 -6.7078 3.7775 12 6 5.1611 -8.0909 3.0934 13 6 5.3993 -7.7410 1.6007 14 1 6.4609 -7.6039 1.3955 15 6 4.8002 -8.8101 0.6845 16 1 3.7577 -8.9775 0.9548 17 6 4.8811 -8.3395 -0.7691 18 7 5.5506 -10.0591 0.8359 19 6 4.9507 -11.2570 0.5523 20 1 3.9242 -11.2809 0.2176 21 6 5.6616 -12.4406 0.6963 22 7 5.0850 -13.5919 0.4233 23 14 7.4369 -12.3992 1.2760 24 1 7.4758 -12.4861 2.7579 25 1 8.1747 -13.5486 0.6933 26 1 8.0713 -11.1302 0.8376 27 6 4.6307 -6.4025 1.4685 28 6 5.0825 -2.1298 1.9243 29 6 4.5846 -1.1959 0.8189 30 1 -1.0498 -0.0001 0.0003 31 1 3.0094 -0.2445 -0.9980 32 1 3.0089 0.9878 0.2864 33 1 1.3392 -2.0837 0.8912 34 1 2.6350 -2.7044 -0.1591 35 1 2.3170 -4.1799 1.8019 36 1 2.6074 -2.8030 2.8923 37 1 4.5861 -3.9391 0.8620 38 1 6.1669 -6.5105 4.1933 39 1 4.4290 -6.6778 4.5680 40 1 4.1952 -8.5784 3.2259 41 1 5.9664 -8.7182 3.4758 42 1 4.4547 -9.1013 -1.4218 43 1 4.3227 -7.4102 -0.8817 44 1 5.9237 -8.1720 -1.0394 45 1 6.4726 -10.0377 1.1368 46 1 5.5819 -14.4189 0.5235 47 1 3.5666 -6.5887 1.3238 48 1 5.0300 -5.8159 0.6412 49 1 6.1549 -2.2886 1.8109 50 1 4.8819 -1.6815 2.8974 51 1 4.7985 -1.6383 -0.1540 52 1 5.0916 -0.2345 0.9002 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501090881.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:18 Heat of formation + Delta-G solvation = 12.886776 kcal Electronic energy + Delta-G solvation = -29145.457086 eV Core-core repulsion = 25338.539832 eV Total energy + Delta-G solvation = -3806.917254 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -41.54496 -39.97886 -38.93438 -36.85152 -35.57185 -34.21761 -33.23967 -32.10725 -31.78131 -31.25550 -28.85835 -28.30060 -26.16944 -25.11765 -24.20408 -23.79725 -22.60087 -21.32964 -21.04877 -19.99982 -19.53531 -18.98067 -18.22463 -17.60517 -17.01261 -16.62334 -16.28248 -16.13058 -15.79352 -15.73255 -15.10908 -15.04477 -14.72886 -14.67324 -14.48395 -14.22404 -14.00088 -13.98376 -13.83394 -13.72307 -13.47749 -13.38738 -12.98520 -12.94235 -12.81978 -12.47796 -12.35292 -12.15864 -12.00668 -11.97393 -11.77564 -11.72648 -11.60237 -11.57545 -11.37929 -11.29027 -11.05686 -10.94470 -10.73822 -9.70031 -9.28279 -9.26535 -7.97686 -5.29508 1.40035 1.42665 1.49880 1.54965 1.76160 1.92922 1.93935 2.51828 3.07174 3.32124 3.36000 3.38458 3.47255 3.68817 3.76308 3.82971 3.86835 4.03292 4.15102 4.21299 4.25491 4.35851 4.36916 4.38810 4.52499 4.55417 4.57946 4.61410 4.67770 4.70576 4.72831 4.75906 4.85703 4.87923 4.92362 4.97505 5.02399 5.07536 5.10750 5.12904 5.14659 5.21831 5.29201 5.37431 5.40518 5.64285 5.83811 6.01904 6.09546 6.26584 6.49110 6.70667 7.10456 7.13853 7.91199 8.08490 9.24033 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.018832 B = 0.002361 C = 0.002217 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1486.481242 B =11856.368761 C =12625.602023 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.551 5.551 5 C 0.062 3.938 6 C -0.097 4.097 7 C -0.097 4.097 8 C 0.530 3.470 9 O -0.585 6.585 10 N -0.616 5.616 11 C 0.109 3.891 12 C -0.117 4.117 13 C -0.099 4.099 14 H 0.086 0.914 15 C 0.185 3.815 16 H 0.049 0.951 17 C -0.161 4.161 18 N -0.749 5.749 19 C -0.216 4.216 20 H 0.058 0.942 21 C -0.068 4.068 22 N -0.987 5.987 23 Si 0.950 3.050 24 H -0.281 1.281 25 H -0.303 1.303 26 H -0.250 1.250 27 C 0.112 3.888 28 C -0.097 4.097 29 C 0.062 3.938 30 H 0.241 0.759 31 H 0.071 0.929 32 H 0.109 0.891 33 H 0.077 0.923 34 H 0.048 0.952 35 H 0.080 0.920 36 H 0.056 0.944 37 H 0.111 0.889 38 H 0.061 0.939 39 H 0.062 0.938 40 H 0.073 0.927 41 H 0.076 0.924 42 H 0.030 0.970 43 H 0.080 0.920 44 H 0.050 0.950 45 H 0.364 0.636 46 H 0.255 0.745 47 H 0.085 0.915 48 H 0.103 0.897 49 H 0.076 0.924 50 H 0.060 0.940 51 H 0.054 0.946 52 H 0.095 0.905 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.364 29.710 -1.784 29.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.215 4.215 3 C 0.036 3.964 4 N -0.277 5.277 5 C -0.066 4.066 6 C -0.135 4.135 7 C -0.118 4.118 8 C 0.320 3.680 9 O -0.465 6.465 10 N -0.349 5.349 11 C -0.014 4.014 12 C -0.155 4.155 13 C -0.118 4.118 14 H 0.104 0.896 15 C 0.077 3.923 16 H 0.067 0.933 17 C -0.220 4.220 18 N -0.392 5.392 19 C -0.347 4.347 20 H 0.076 0.924 21 C -0.259 4.259 22 N -0.638 5.638 23 Si 0.778 3.222 24 H -0.207 1.207 25 H -0.230 1.230 26 H -0.175 1.175 27 C -0.010 4.010 28 C -0.136 4.136 29 C -0.065 4.065 30 H 0.257 0.743 31 H 0.089 0.911 32 H 0.126 0.874 33 H 0.096 0.904 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.075 0.925 37 H 0.129 0.871 38 H 0.080 0.920 39 H 0.081 0.919 40 H 0.092 0.908 41 H 0.095 0.905 42 H 0.049 0.951 43 H 0.099 0.901 44 H 0.070 0.930 45 H 0.197 0.803 46 H 0.064 0.936 47 H 0.103 0.897 48 H 0.121 0.879 49 H 0.094 0.906 50 H 0.079 0.921 51 H 0.072 0.928 52 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -3.442 30.086 -0.790 30.292 hybrid contribution 0.911 -1.335 -0.189 1.627 sum -2.531 28.751 -0.979 28.878 Atomic orbital electron populations 1.25676 0.96877 0.99283 0.99505 1.23291 0.95131 1.01618 1.01496 1.19159 0.84334 0.97620 0.95296 1.62028 1.04793 1.09445 1.51389 1.22056 0.98772 0.88710 0.97035 1.21441 0.92555 0.99746 0.99790 1.21407 0.97670 0.95596 0.97167 1.20860 0.76357 0.81069 0.89688 1.90671 1.51398 1.75188 1.29289 1.48687 1.68770 1.05316 1.12098 1.21916 1.00614 0.87555 0.91275 1.22572 1.03219 0.94740 0.94951 1.22545 1.00616 0.94022 0.94655 0.89556 1.20319 0.94731 0.83800 0.93421 0.93318 1.22349 1.01558 1.00626 0.97478 1.42765 1.12591 1.02118 1.81764 1.18986 0.96511 0.84231 1.35011 0.92396 1.25447 1.02292 0.94910 1.03215 1.69881 1.38399 0.97679 1.57848 0.85477 0.81128 0.77470 0.78088 1.20718 1.23013 1.17484 1.22485 1.01094 0.91961 0.85475 1.21429 0.99344 0.92842 0.99963 1.22108 0.86607 1.00456 0.97311 0.74303 0.91078 0.87351 0.90432 0.93335 0.90159 0.92471 0.87138 0.92011 0.91946 0.90790 0.90487 0.95077 0.90109 0.93047 0.80320 0.93639 0.89657 0.87915 0.90574 0.92082 0.92830 0.88641 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.49 19.02 74.32 1.41 -1.08 16 2 C -0.22 -3.15 11.51 31.12 0.36 -2.79 16 3 C 0.16 1.88 5.77 84.50 0.49 2.37 16 4 N -0.55 -7.86 4.79 -907.48 -4.35 -12.21 16 5 C 0.06 0.89 5.07 86.33 0.44 1.33 16 6 C -0.10 -1.62 5.36 30.65 0.16 -1.46 16 7 C -0.10 -1.66 2.27 -11.46 -0.03 -1.69 16 8 C 0.53 13.02 6.87 87.65 0.60 13.63 16 9 O -0.59 -19.27 16.52 -3.04 -0.05 -19.32 16 10 N -0.62 -14.03 3.33 -811.83 -2.70 -16.73 16 11 C 0.11 2.68 6.87 86.73 0.60 3.28 16 12 C -0.12 -2.99 6.28 31.78 0.20 -2.79 16 13 C -0.10 -2.40 2.65 -9.40 -0.02 -2.42 16 14 H 0.09 2.08 8.14 -2.39 -0.02 2.06 16 15 C 0.19 5.84 2.42 44.99 0.11 5.95 16 16 H 0.05 1.65 8.02 -2.39 -0.02 1.63 16 17 C -0.16 -4.46 9.27 71.98 0.67 -3.79 16 18 N -0.75 -31.51 4.78 -322.95 -1.54 -33.06 16 19 C -0.22 -11.59 10.41 84.03 0.87 -10.72 16 20 H 0.06 3.43 8.06 -2.91 -0.02 3.40 16 21 C -0.07 -3.87 5.50 84.86 0.47 -3.40 16 22 N -0.99 -62.17 13.97 21.65 0.30 -61.87 16 23 Si 0.95 44.26 27.74 68.60 1.90 46.16 16 24 H -0.28 -12.83 7.11 99.48 0.71 -12.12 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 26 H -0.25 -10.38 6.52 99.48 0.65 -9.73 16 27 C 0.11 2.10 4.93 86.86 0.43 2.52 16 28 C -0.10 -1.60 5.05 30.65 0.15 -1.45 16 29 C 0.06 0.73 5.42 86.32 0.47 1.20 16 30 H 0.24 1.46 7.80 -4.42 -0.03 1.43 16 31 H 0.07 0.63 8.08 -2.39 -0.02 0.62 16 32 H 0.11 1.02 8.14 -2.39 -0.02 1.00 16 33 H 0.08 1.22 6.36 -2.39 -0.02 1.20 16 34 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 36 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 37 H 0.11 1.41 6.42 -2.39 -0.02 1.39 16 38 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 39 H 0.06 1.57 8.14 -2.39 -0.02 1.55 16 40 H 0.07 2.03 7.99 -2.38 -0.02 2.01 16 41 H 0.08 2.07 8.14 -2.39 -0.02 2.05 16 42 H 0.03 1.03 8.14 -2.38 -0.02 1.01 16 43 H 0.08 1.59 7.23 -2.39 -0.02 1.57 16 44 H 0.05 1.38 8.14 -2.38 -0.02 1.37 16 45 H 0.36 14.87 5.66 -92.70 -0.52 14.35 16 46 H 0.25 15.43 8.31 -92.71 -0.77 14.66 16 47 H 0.09 1.46 8.04 -2.39 -0.02 1.44 16 48 H 0.10 1.42 6.76 -2.39 -0.02 1.41 16 49 H 0.08 1.18 8.14 -2.39 -0.02 1.16 16 50 H 0.06 1.33 7.78 -2.39 -0.02 1.31 16 51 H 0.05 0.49 8.14 -2.39 -0.02 0.47 16 52 H 0.10 0.87 8.12 -2.39 -0.02 0.85 16 Total: -1.00 -72.85 408.87 1.24 -71.62 By element: Atomic # 1 Polarization: 26.42 SS G_CDS: 0.30 Total: 26.72 kcal Atomic # 6 Polarization: -8.69 SS G_CDS: 7.38 Total: -1.31 kcal Atomic # 7 Polarization: -115.57 SS G_CDS: -8.29 Total: -123.86 kcal Atomic # 8 Polarization: -19.27 SS G_CDS: -0.05 Total: -19.32 kcal Atomic # 14 Polarization: 44.26 SS G_CDS: 1.90 Total: 46.16 kcal Total: -72.85 1.24 -71.62 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501090881.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.502 kcal (2) G-P(sol) polarization free energy of solvation -72.853 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.649 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.238 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.616 kcal (6) G-S(sol) free energy of system = (1) + (5) 12.887 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds