Wall clock time and date at job start Tue Mar 31 2020 17:34:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17400 * 1 3 3 C 1.47197 * 179.97438 * 2 1 4 4 N 1.46896 * 109.47039 * 96.35211 * 3 2 1 5 5 C 1.46846 * 111.00406 * 45.78688 * 4 3 2 6 6 C 1.53029 * 109.52789 * 185.84124 * 5 4 3 7 7 C 1.53120 * 109.28117 * 300.82109 * 6 5 4 8 8 C 1.50694 * 109.52702 * 177.55715 * 7 6 5 9 9 O 1.21281 * 120.00174 * 270.13561 * 8 7 6 10 10 N 1.34783 * 119.99832 * 90.13137 * 8 7 6 11 11 C 1.47020 * 125.64861 * 184.57305 * 10 8 7 12 12 C 1.54325 * 107.27163 * 181.02207 * 11 10 8 13 13 C 1.55158 * 102.94248 * 22.19510 * 12 11 10 14 14 H 1.08999 * 111.00527 * 82.56779 * 13 12 11 15 15 C 1.53000 * 111.00191 * 206.42350 * 13 12 11 16 16 H 1.08998 * 109.47085 * 55.55504 * 15 13 12 17 17 C 1.52993 * 109.46930 * 295.55387 * 15 13 12 18 18 N 1.46500 * 109.46895 * 175.55319 * 15 13 12 19 19 C 1.36933 * 120.00308 * 205.00101 * 18 15 13 20 20 H 1.08003 * 119.99808 * 359.97438 * 19 18 15 21 21 C 1.38808 * 120.00465 * 180.02562 * 19 18 15 22 22 N 1.31627 * 119.99779 * 359.97438 * 21 19 18 23 23 Si 1.86802 * 120.00224 * 180.02562 * 21 19 18 24 24 H 1.48496 * 109.47407 * 59.99574 * 23 21 19 25 25 H 1.48499 * 109.47139 * 179.97438 * 23 21 19 26 26 H 1.48507 * 109.46686 * 299.99319 * 23 21 19 27 27 C 1.47424 * 125.64601 * 4.26596 * 10 8 7 28 28 C 1.53124 * 109.16004 * 57.65040 * 7 6 5 29 29 C 1.46846 * 111.00148 * 169.99935 * 4 3 2 30 30 H 4.40884 * 5.52007 * 179.97438 * 4 1 2 31 31 H 1.09001 * 109.47113 * 216.34586 * 3 2 1 32 32 H 1.08999 * 109.47415 * 336.34931 * 3 2 1 33 33 H 1.09001 * 109.46100 * 305.86207 * 5 4 3 34 34 H 1.09004 * 109.46285 * 65.82249 * 5 4 3 35 35 H 1.08997 * 109.50717 * 180.87985 * 6 5 4 36 36 H 1.09001 * 109.53751 * 60.78030 * 6 5 4 37 37 H 1.09006 * 109.57507 * 297.72200 * 7 6 5 38 38 H 1.09009 * 109.88158 * 300.44248 * 11 10 8 39 39 H 1.09001 * 109.88499 * 61.44995 * 11 10 8 40 40 H 1.09004 * 110.71560 * 140.55318 * 12 11 10 41 41 H 1.08994 * 110.71864 * 263.64815 * 12 11 10 42 42 H 1.08992 * 109.47359 * 54.32326 * 17 15 13 43 43 H 1.09003 * 109.47010 * 174.32065 * 17 15 13 44 44 H 1.08998 * 109.47093 * 294.31756 * 17 15 13 45 45 H 0.97007 * 120.00052 * 24.99716 * 18 15 13 46 46 H 0.96998 * 119.99744 * 180.02562 * 22 21 19 47 47 H 1.08998 * 110.36579 * 274.73984 * 27 10 8 48 48 H 1.08999 * 110.37143 * 37.06861 * 27 10 8 49 49 H 1.08996 * 109.50323 * 182.40602 * 28 7 6 50 50 H 1.09003 * 109.53306 * 62.31089 * 28 7 6 51 51 H 1.08998 * 109.46435 * 294.17471 * 29 4 3 52 52 H 1.08997 * 109.46418 * 54.15424 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1355 0.1541 -1.3765 5 6 2.4092 1.2205 -2.0776 6 6 2.8417 1.2546 -3.5451 7 6 4.3506 1.5035 -3.6219 8 6 4.7926 1.4784 -5.0623 9 8 5.1423 0.4346 -5.5713 10 7 4.7993 2.6161 -5.7850 11 6 5.1138 2.7194 -7.2175 12 6 5.0202 4.2114 -7.6007 13 6 5.2121 4.9323 -6.2402 14 1 6.2694 5.0206 -5.9906 15 6 4.5358 6.3047 -6.2467 16 1 3.4839 6.1902 -6.5079 17 6 5.2215 7.2062 -7.2752 18 7 4.6457 6.9095 -4.9169 19 6 3.7310 7.8447 -4.5123 20 1 2.9287 8.1368 -5.1737 21 6 3.8354 8.4181 -3.2525 22 7 4.8134 8.0625 -2.4466 23 14 2.5871 9.6934 -2.7003 24 1 1.2288 9.0932 -2.7099 25 1 2.9177 10.1469 -1.3255 26 1 2.6221 10.8537 -3.6266 27 6 4.4863 3.9621 -5.2714 28 6 5.0813 0.4059 -2.8432 29 6 4.5837 0.3965 -1.3960 30 1 -1.0500 -0.0002 0.0002 31 1 3.0089 0.8286 0.6091 32 1 3.0098 -0.9405 0.4122 33 1 1.3377 1.0292 -2.0191 34 1 2.6327 2.1798 -1.6108 35 1 2.3140 2.0563 -4.0616 36 1 2.6059 0.3007 -4.0169 37 1 4.5831 2.4753 -3.1863 38 1 6.1231 2.3516 -7.4029 39 1 4.3958 2.1396 -7.7974 40 1 5.8152 4.4816 -8.2958 41 1 4.0432 4.4395 -8.0267 42 1 5.2286 6.7103 -8.2457 43 1 4.6781 8.1480 -7.3525 44 1 6.2463 7.4029 -6.9602 45 1 5.3665 6.6474 -4.3229 46 1 4.8861 8.4630 -1.5661 47 1 3.4105 4.1355 -5.2927 48 1 4.8706 4.0804 -4.2583 49 1 6.1535 0.6014 -2.8582 50 1 4.8813 -0.5619 -3.3031 51 1 4.7971 1.3596 -0.9324 52 1 5.0917 -0.3934 -0.8427 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501090882.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:22 Heat of formation + Delta-G solvation = 10.717631 kcal Electronic energy + Delta-G solvation = -29562.064972 eV Core-core repulsion = 25755.053657 eV Total energy + Delta-G solvation = -3807.011315 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.96 seconds Orbital eigenvalues (eV) -41.54670 -39.97878 -38.90376 -36.70883 -35.60569 -34.22375 -33.24414 -31.99003 -31.82696 -30.18471 -29.47848 -28.32210 -25.88042 -25.36557 -24.26616 -23.90859 -22.75497 -21.20507 -20.94446 -19.99565 -19.10357 -19.01560 -18.17790 -17.54435 -17.07356 -16.52459 -16.41358 -16.14533 -15.81758 -15.52776 -15.40869 -15.08234 -14.75977 -14.73849 -14.34452 -14.22299 -14.03507 -13.97940 -13.76089 -13.52617 -13.35012 -13.11500 -13.01883 -12.79956 -12.63610 -12.48569 -12.34795 -12.23245 -12.20576 -12.09789 -11.75895 -11.72209 -11.64508 -11.47995 -11.36340 -11.32506 -11.09367 -10.90549 -10.73056 -9.69313 -9.37417 -8.94231 -7.88593 -5.15041 1.50364 1.51032 1.51883 1.56816 1.72567 1.90225 1.95792 2.59800 3.01372 3.32329 3.43378 3.44877 3.55787 3.65881 3.74566 3.84811 3.88140 4.11221 4.15960 4.18689 4.27875 4.33000 4.37078 4.43171 4.49599 4.52624 4.58728 4.64636 4.65565 4.68117 4.74130 4.81619 4.85865 4.86959 4.87341 4.96182 4.99761 5.05258 5.08943 5.09912 5.15004 5.25879 5.28415 5.36616 5.42787 5.58709 5.66558 5.94200 6.01474 6.33665 6.44710 6.67461 7.08060 7.40963 8.17534 8.39993 9.34394 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.008078 B = 0.003787 C = 0.002781 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3465.570258 B = 7391.836536 C =10065.541639 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.192 4.192 2 C -0.218 4.218 3 C 0.160 3.840 4 N -0.542 5.542 5 C 0.061 3.939 6 C -0.092 4.092 7 C -0.104 4.104 8 C 0.533 3.467 9 O -0.579 6.579 10 N -0.617 5.617 11 C 0.104 3.896 12 C -0.110 4.110 13 C -0.094 4.094 14 H 0.077 0.923 15 C 0.182 3.818 16 H 0.049 0.951 17 C -0.156 4.156 18 N -0.734 5.734 19 C -0.230 4.230 20 H 0.074 0.926 21 C -0.070 4.070 22 N -0.967 5.967 23 Si 0.960 3.040 24 H -0.280 1.280 25 H -0.300 1.300 26 H -0.282 1.282 27 C 0.119 3.881 28 C -0.092 4.092 29 C 0.059 3.941 30 H 0.244 0.756 31 H 0.064 0.936 32 H 0.115 0.885 33 H 0.082 0.918 34 H 0.032 0.968 35 H 0.071 0.929 36 H 0.068 0.932 37 H 0.088 0.912 38 H 0.065 0.935 39 H 0.070 0.930 40 H 0.104 0.896 41 H 0.089 0.911 42 H 0.076 0.924 43 H 0.034 0.966 44 H 0.038 0.962 45 H 0.372 0.628 46 H 0.248 0.752 47 H 0.068 0.932 48 H 0.065 0.935 49 H 0.073 0.927 50 H 0.071 0.929 51 H 0.040 0.960 52 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.898 -15.272 -2.206 15.701 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.218 4.218 3 C 0.034 3.966 4 N -0.267 5.267 5 C -0.067 4.067 6 C -0.131 4.131 7 C -0.125 4.125 8 C 0.323 3.677 9 O -0.459 6.459 10 N -0.349 5.349 11 C -0.018 4.018 12 C -0.148 4.148 13 C -0.114 4.114 14 H 0.095 0.905 15 C 0.074 3.926 16 H 0.067 0.933 17 C -0.216 4.216 18 N -0.374 5.374 19 C -0.362 4.362 20 H 0.092 0.908 21 C -0.263 4.263 22 N -0.618 5.618 23 Si 0.790 3.210 24 H -0.206 1.206 25 H -0.227 1.227 26 H -0.208 1.208 27 C -0.003 4.003 28 C -0.131 4.131 29 C -0.068 4.068 30 H 0.260 0.740 31 H 0.081 0.919 32 H 0.133 0.867 33 H 0.100 0.900 34 H 0.050 0.950 35 H 0.090 0.910 36 H 0.087 0.913 37 H 0.107 0.893 38 H 0.083 0.917 39 H 0.088 0.912 40 H 0.122 0.878 41 H 0.108 0.892 42 H 0.095 0.905 43 H 0.053 0.947 44 H 0.058 0.942 45 H 0.204 0.796 46 H 0.057 0.943 47 H 0.086 0.914 48 H 0.084 0.916 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.058 0.942 52 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -2.931 -16.211 -2.696 16.693 hybrid contribution -0.264 1.748 1.212 2.143 sum -3.194 -14.463 -1.484 14.886 Atomic orbital electron populations 1.25703 0.96844 1.00101 0.98299 1.23256 0.95096 1.01444 1.02018 1.19180 0.84644 1.03327 0.89476 1.62099 1.04569 1.45280 1.14802 1.22041 0.98999 0.92399 0.93249 1.21385 0.92411 1.02373 0.96905 1.21388 0.97985 1.01902 0.91217 1.20596 0.76662 0.81758 0.88725 1.90639 1.50240 1.31541 1.73509 1.48718 1.67696 1.07368 1.11165 1.22060 1.01013 0.98133 0.80618 1.22676 1.04584 0.91223 0.96317 1.22529 0.99694 0.93756 0.95459 0.90487 1.20361 0.97148 0.89815 0.85322 0.93275 1.22311 1.00034 0.99854 0.99409 1.42593 1.32829 1.47826 1.14156 1.19518 1.05193 1.13783 0.97727 0.90810 1.25358 1.00459 1.02902 0.97531 1.69786 1.34847 1.48046 1.09158 0.85413 0.79209 0.79738 0.76625 1.20616 1.22693 1.20805 1.22283 0.99961 0.79889 0.98173 1.21391 0.99119 0.98141 0.94419 1.22139 0.86900 1.01327 0.96419 0.73950 0.91853 0.86669 0.89973 0.95014 0.90997 0.91289 0.89349 0.91667 0.91215 0.87773 0.89200 0.90503 0.94653 0.94231 0.79590 0.94330 0.91363 0.91634 0.90794 0.91019 0.94180 0.87884 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -3.46 19.01 74.32 1.41 -2.04 16 2 C -0.22 -4.53 11.51 31.12 0.36 -4.18 16 3 C 0.16 2.98 5.77 84.50 0.49 3.46 16 4 N -0.54 -11.75 4.79 -907.50 -4.35 -16.10 16 5 C 0.06 1.45 5.08 86.32 0.44 1.88 16 6 C -0.09 -2.31 5.36 30.64 0.16 -2.15 16 7 C -0.10 -2.73 2.22 -11.46 -0.03 -2.76 16 8 C 0.53 16.28 6.91 87.65 0.61 16.89 16 9 O -0.58 -20.93 16.46 -3.03 -0.05 -20.98 16 10 N -0.62 -17.38 3.32 -811.33 -2.70 -20.07 16 11 C 0.10 2.48 6.87 86.73 0.60 3.08 16 12 C -0.11 -2.27 5.44 31.78 0.17 -2.09 16 13 C -0.09 -2.62 2.65 -9.32 -0.02 -2.64 16 14 H 0.08 2.25 8.14 -2.39 -0.02 2.23 16 15 C 0.18 6.15 2.40 44.99 0.11 6.26 16 16 H 0.05 1.69 8.08 -2.39 -0.02 1.67 16 17 C -0.16 -4.80 9.41 71.98 0.68 -4.12 16 18 N -0.73 -33.28 4.87 -322.96 -1.57 -34.85 16 19 C -0.23 -11.86 9.93 84.03 0.83 -11.03 16 20 H 0.07 3.67 7.83 -2.91 -0.02 3.65 16 21 C -0.07 -3.82 5.50 84.86 0.47 -3.35 16 22 N -0.97 -56.45 13.06 21.65 0.28 -56.16 16 23 Si 0.96 44.43 29.55 68.60 2.03 46.46 16 24 H -0.28 -12.50 7.11 99.48 0.71 -11.79 16 25 H -0.30 -14.23 7.11 99.48 0.71 -13.52 16 26 H -0.28 -12.67 7.11 99.48 0.71 -11.97 16 27 C 0.12 3.50 5.83 86.94 0.51 4.00 16 28 C -0.09 -2.20 5.02 30.65 0.15 -2.04 16 29 C 0.06 1.18 5.42 86.33 0.47 1.65 16 30 H 0.24 2.58 7.80 -4.42 -0.03 2.55 16 31 H 0.06 1.12 8.08 -2.39 -0.02 1.10 16 32 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 33 H 0.08 1.94 6.36 -2.39 -0.02 1.93 16 34 H 0.03 0.81 8.14 -2.38 -0.02 0.79 16 35 H 0.07 1.79 8.14 -2.39 -0.02 1.77 16 36 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 37 H 0.09 2.42 6.51 -2.38 -0.02 2.40 16 38 H 0.06 1.57 8.14 -2.38 -0.02 1.55 16 39 H 0.07 1.60 8.14 -2.39 -0.02 1.58 16 40 H 0.10 1.73 8.01 -2.38 -0.02 1.71 16 41 H 0.09 1.69 8.04 -2.39 -0.02 1.67 16 42 H 0.08 1.77 7.18 -2.39 -0.02 1.75 16 43 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 44 H 0.04 1.28 8.14 -2.39 -0.02 1.26 16 45 H 0.37 18.40 7.80 -92.70 -0.72 17.68 16 46 H 0.25 14.27 8.31 -92.71 -0.77 13.50 16 47 H 0.07 2.08 8.04 -2.39 -0.02 2.06 16 48 H 0.07 2.13 6.85 -2.39 -0.02 2.12 16 49 H 0.07 1.70 8.14 -2.39 -0.02 1.68 16 50 H 0.07 1.90 7.78 -2.39 -0.02 1.88 16 51 H 0.04 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.10 1.61 8.12 -2.39 -0.02 1.59 16 Total: -1.00 -65.80 412.05 1.20 -64.60 By element: Atomic # 1 Polarization: 36.13 SS G_CDS: 0.16 Total: 36.29 kcal Atomic # 6 Polarization: -6.58 SS G_CDS: 7.40 Total: 0.82 kcal Atomic # 7 Polarization: -118.86 SS G_CDS: -8.33 Total: -127.19 kcal Atomic # 8 Polarization: -20.93 SS G_CDS: -0.05 Total: -20.98 kcal Atomic # 14 Polarization: 44.43 SS G_CDS: 2.03 Total: 46.46 kcal Total: -65.80 1.20 -64.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501090882.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.321 kcal (2) G-P(sol) polarization free energy of solvation -65.804 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 9.516 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.201 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.603 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.96 seconds