Wall clock time and date at job start Tue Mar 31 2020 17:34:30 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47114 * 14.78411 * 3 2 1 5 5 C 1.46841 * 111.00500 * 45.79088 * 4 3 2 6 6 C 1.53033 * 109.52733 * 185.84069 * 5 4 3 7 7 C 1.53123 * 109.27671 * 300.81604 * 6 5 4 8 8 C 1.50701 * 109.52363 * 177.55583 * 7 6 5 9 9 O 1.21277 * 120.00257 * 251.11972 * 8 7 6 10 10 N 1.34786 * 119.99780 * 71.11960 * 8 7 6 11 11 C 1.47025 * 125.64635 * 4.12097 * 10 8 7 12 12 C 1.54325 * 107.26570 * 178.84823 * 11 10 8 13 13 C 1.55160 * 103.01971 * 338.14282 * 12 11 10 14 14 H 1.09004 * 111.00274 * 277.22891 * 13 12 11 15 15 C 1.53008 * 111.00346 * 153.37969 * 13 12 11 16 16 H 1.08994 * 109.46972 * 305.90392 * 15 13 12 17 17 C 1.52997 * 109.46895 * 65.90395 * 15 13 12 18 18 N 1.46501 * 109.46813 * 185.90069 * 15 13 12 19 19 C 1.36939 * 119.99858 * 155.00022 * 18 15 13 20 20 H 1.08000 * 119.99939 * 0.02562 * 19 18 15 21 21 C 1.38818 * 119.99879 * 180.02562 * 19 18 15 22 22 N 1.31611 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99631 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47577 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47209 * 119.99961 * 23 21 19 26 26 H 1.48498 * 109.47034 * 239.99661 * 23 21 19 27 27 C 1.47420 * 125.64839 * 184.42638 * 10 8 7 28 28 C 1.53119 * 109.15750 * 57.65432 * 7 6 5 29 29 C 1.46852 * 110.99602 * 169.99683 * 4 3 2 30 30 H 4.40881 * 5.52220 * 179.97438 * 4 1 2 31 31 H 1.09009 * 109.46637 * 134.78009 * 3 2 1 32 32 H 1.08993 * 109.47188 * 254.77687 * 3 2 1 33 33 H 1.09007 * 109.45709 * 305.85540 * 5 4 3 34 34 H 1.09000 * 109.46391 * 65.82003 * 5 4 3 35 35 H 1.09001 * 109.50714 * 180.87555 * 6 5 4 36 36 H 1.09001 * 109.50455 * 60.75649 * 6 5 4 37 37 H 1.08998 * 109.57119 * 297.71619 * 7 6 5 38 38 H 1.09003 * 109.88422 * 298.39562 * 11 10 8 39 39 H 1.09003 * 109.87835 * 59.56006 * 11 10 8 40 40 H 1.08997 * 110.85387 * 219.67312 * 12 11 10 41 41 H 1.09005 * 110.66833 * 96.52031 * 12 11 10 42 42 H 1.09001 * 109.47310 * 295.01721 * 17 15 13 43 43 H 1.08994 * 109.47626 * 55.02390 * 17 15 13 44 44 H 1.09005 * 109.46790 * 175.02400 * 17 15 13 45 45 H 0.96999 * 119.99977 * 334.99799 * 18 15 13 46 46 H 0.97001 * 119.99788 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.36493 * 322.93370 * 27 10 8 48 48 H 1.09003 * 110.36207 * 85.14651 * 27 10 8 49 49 H 1.09005 * 109.50061 * 182.40750 * 28 7 6 50 50 H 1.08997 * 109.53653 * 62.31043 * 28 7 6 51 51 H 1.09001 * 109.46669 * 294.17029 * 29 4 3 52 52 H 1.09000 * 109.46135 * 54.15923 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3382 -0.3534 5 6 2.4107 -1.8757 -1.5114 6 6 2.8440 -3.3222 -1.7601 7 6 4.3530 -3.3608 -2.0169 8 6 4.7958 -4.7893 -2.2031 9 8 5.4582 -5.3354 -1.3466 10 7 4.4555 -5.4599 -3.3217 11 6 3.7331 -4.8970 -4.4719 12 6 3.5953 -6.0206 -5.5208 13 6 4.7360 -6.9995 -5.1363 14 1 5.6880 -6.6742 -5.5559 15 6 4.4048 -8.4273 -5.5757 16 1 3.4338 -8.7153 -5.1729 17 6 4.3634 -8.4939 -7.1036 18 7 5.4326 -9.3431 -5.0746 19 6 5.1345 -10.6651 -4.8778 20 1 4.1419 -11.0326 -5.0924 21 6 6.1083 -11.5329 -4.4025 22 7 7.3180 -11.0851 -4.1415 23 14 5.7018 -13.3363 -4.1348 24 1 4.2841 -13.5840 -4.5009 25 1 6.5864 -14.1744 -4.9835 26 1 5.9117 -13.6843 -2.7065 27 6 4.7404 -6.8808 -3.5918 28 6 5.0828 -2.7513 -0.8167 29 6 4.5846 -1.3213 -0.5954 30 1 -1.0498 -0.0005 0.0001 31 1 3.0090 0.7248 -0.7295 32 1 3.0092 0.2706 0.9915 33 1 1.3391 -1.8463 -1.3141 34 1 2.6344 -1.2731 -2.3918 35 1 2.3168 -3.7157 -2.6292 36 1 2.6081 -3.9283 -0.8854 37 1 4.5855 -2.7875 -2.9143 38 1 2.7462 -4.5560 -4.1591 39 1 4.2983 -4.0658 -4.8938 40 1 3.7441 -5.6316 -6.5280 41 1 2.6240 -6.5082 -5.4368 42 1 3.5411 -7.8805 -7.4719 43 1 5.3042 -8.1219 -7.5092 44 1 4.2153 -9.5270 -7.4183 45 1 6.3242 -9.0131 -4.8822 46 1 7.9983 -11.6914 -3.8090 47 1 5.7173 -7.1543 -3.1930 48 1 3.9644 -7.5122 -3.1589 49 1 6.1551 -2.7369 -1.0118 50 1 4.8828 -3.3482 0.0731 51 1 4.7981 -0.7214 -1.4801 52 1 5.0919 -0.8896 0.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501090884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:30 Heat of formation + Delta-G solvation = 31.631788 kcal Electronic energy + Delta-G solvation = -29067.620565 eV Core-core repulsion = 25261.516156 eV Total energy + Delta-G solvation = -3806.104409 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.90 seconds Orbital eigenvalues (eV) -40.48295 -39.05239 -37.66222 -35.18044 -34.83990 -32.70858 -32.24620 -31.07640 -30.46293 -28.76598 -28.28420 -27.43001 -24.52481 -23.88619 -23.47138 -22.72913 -21.50260 -20.27772 -19.63057 -18.97505 -18.47715 -17.33933 -16.85710 -16.45459 -16.00011 -15.54258 -15.27531 -15.00439 -14.85866 -14.48115 -14.04991 -13.87402 -13.63520 -13.52843 -13.35166 -13.12621 -13.05061 -12.64529 -12.53925 -12.32748 -12.16715 -11.96691 -11.67503 -11.63737 -11.37590 -11.30548 -11.04938 -10.87914 -10.87786 -10.77498 -10.66551 -10.55112 -10.50830 -10.47030 -10.17964 -9.87325 -9.61939 -9.51883 -8.89653 -8.71499 -8.43854 -6.93927 -5.73494 -3.02504 2.30818 2.46432 2.75947 3.11587 3.45552 3.50813 3.53382 3.64626 3.94983 4.31671 4.49420 4.55621 4.60787 4.70465 4.79736 4.87145 4.93246 4.97338 5.03319 5.06321 5.14763 5.24164 5.27629 5.35306 5.37541 5.49586 5.51911 5.56448 5.57615 5.68013 5.68823 5.80202 5.89814 5.90872 5.94677 5.96198 6.08710 6.16831 6.18727 6.36611 6.40699 6.43579 6.59511 6.60733 6.65238 6.68263 6.86213 7.08492 7.22508 7.69973 7.72969 8.32979 8.44481 9.55896 10.12879 10.47228 11.49077 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002252 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.734471 B =12429.226900 C =12933.373136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.184 4.184 3 C 0.162 3.838 4 N -0.535 5.535 5 C 0.057 3.943 6 C -0.108 4.108 7 C -0.103 4.103 8 C 0.529 3.471 9 O -0.535 6.535 10 N -0.619 5.619 11 C 0.100 3.900 12 C -0.125 4.125 13 C -0.101 4.101 14 H 0.080 0.920 15 C 0.185 3.815 16 H 0.049 0.951 17 C -0.164 4.164 18 N -0.724 5.724 19 C -0.237 4.237 20 H 0.070 0.930 21 C -0.013 4.013 22 N -0.931 5.931 23 Si 0.905 3.095 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C 0.119 3.881 28 C -0.098 4.098 29 C 0.057 3.943 30 H 0.218 0.782 31 H 0.058 0.942 32 H 0.100 0.900 33 H 0.082 0.918 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.078 0.922 37 H 0.088 0.912 38 H 0.066 0.934 39 H 0.063 0.937 40 H 0.080 0.920 41 H 0.077 0.923 42 H 0.036 0.964 43 H 0.044 0.956 44 H 0.055 0.945 45 H 0.384 0.616 46 H 0.254 0.746 47 H 0.083 0.917 48 H 0.070 0.930 49 H 0.075 0.925 50 H 0.084 0.916 51 H 0.037 0.963 52 H 0.082 0.918 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.674 25.826 2.052 28.416 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.185 4.185 3 C 0.036 3.964 4 N -0.260 5.260 5 C -0.071 4.071 6 C -0.145 4.145 7 C -0.124 4.124 8 C 0.317 3.683 9 O -0.412 6.412 10 N -0.353 5.353 11 C -0.023 4.023 12 C -0.163 4.163 13 C -0.121 4.121 14 H 0.098 0.902 15 C 0.074 3.926 16 H 0.066 0.934 17 C -0.224 4.224 18 N -0.366 5.366 19 C -0.369 4.369 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.579 5.579 23 Si 0.736 3.264 24 H -0.206 1.206 25 H -0.220 1.220 26 H -0.219 1.219 27 C -0.002 4.002 28 C -0.136 4.136 29 C -0.070 4.070 30 H 0.235 0.765 31 H 0.075 0.925 32 H 0.118 0.882 33 H 0.101 0.899 34 H 0.054 0.946 35 H 0.094 0.906 36 H 0.097 0.903 37 H 0.106 0.894 38 H 0.084 0.916 39 H 0.081 0.919 40 H 0.098 0.902 41 H 0.096 0.904 42 H 0.055 0.945 43 H 0.063 0.937 44 H 0.074 0.926 45 H 0.217 0.783 46 H 0.064 0.936 47 H 0.101 0.899 48 H 0.088 0.912 49 H 0.094 0.906 50 H 0.103 0.897 51 H 0.055 0.945 52 H 0.100 0.900 Dipole moment (debyes) X Y Z Total from point charges -11.424 25.082 3.014 27.726 hybrid contribution 0.088 -0.399 -0.633 0.754 sum -11.336 24.683 2.381 27.266 Atomic orbital electron populations 1.24943 0.95945 0.99536 1.00946 1.22808 0.94253 1.00910 1.00502 1.19084 0.84795 0.90390 1.02166 1.62057 1.04380 1.21406 1.38204 1.22140 0.98995 0.94938 0.90987 1.21600 0.93307 0.96741 1.02901 1.21341 0.97178 0.93448 1.00465 1.20189 0.79605 0.87922 0.80549 1.90731 1.38641 1.69854 1.41927 1.48625 1.57088 1.12548 1.17051 1.22105 0.96206 0.97104 0.86909 1.22676 1.00018 0.95608 0.98014 1.22664 0.98422 0.96749 0.94289 0.90210 1.20155 0.93553 0.86819 0.92041 0.93352 1.22442 0.99636 1.01236 0.99090 1.42426 1.10434 1.05674 1.78033 1.19239 0.96279 0.84974 1.36366 0.91187 1.24738 0.95876 0.98097 1.02222 1.69666 1.02663 1.34310 1.51246 0.86155 0.77294 0.85514 0.77444 1.20608 1.21970 1.21891 1.22243 1.02740 0.79755 0.95483 1.21424 0.99392 0.94555 0.98212 1.22151 0.86924 0.97426 1.00494 0.76523 0.92452 0.88240 0.89946 0.94640 0.90619 0.90304 0.89390 0.91582 0.91856 0.90159 0.90405 0.94460 0.93664 0.92609 0.78272 0.93571 0.89855 0.91162 0.90630 0.89690 0.94515 0.89957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -1.41 19.02 29.55 0.56 -0.84 16 2 C -0.18 -1.52 11.51 -37.12 -0.43 -1.94 16 3 C 0.16 1.15 5.77 -6.62 -0.04 1.12 16 4 N -0.54 -4.61 4.79 -238.18 -1.14 -5.75 16 5 C 0.06 0.48 5.07 -3.84 -0.02 0.46 16 6 C -0.11 -1.03 5.28 -26.65 -0.14 -1.17 16 7 C -0.10 -1.10 1.98 -91.65 -0.18 -1.28 16 8 C 0.53 8.03 7.09 -10.98 -0.08 7.95 16 9 O -0.54 -10.55 16.17 5.56 0.09 -10.46 16 10 N -0.62 -8.89 3.33 -170.52 -0.57 -9.46 16 11 C 0.10 1.04 6.16 -3.06 -0.02 1.02 16 12 C -0.12 -1.39 5.65 -24.89 -0.14 -1.53 16 13 C -0.10 -1.56 2.63 -88.47 -0.23 -1.79 16 14 H 0.08 1.28 8.14 -51.93 -0.42 0.85 16 15 C 0.18 3.45 2.40 -67.93 -0.16 3.28 16 16 H 0.05 0.93 8.05 -51.93 -0.42 0.51 16 17 C -0.16 -2.77 9.26 37.16 0.34 -2.43 16 18 N -0.72 -17.66 4.83 -53.42 -0.26 -17.92 16 19 C -0.24 -6.50 9.93 -15.06 -0.15 -6.65 16 20 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 21 C -0.01 -0.38 5.50 -17.43 -0.10 -0.48 16 22 N -0.93 -28.36 13.06 55.49 0.72 -27.63 16 23 Si 0.90 22.60 29.55 -169.99 -5.02 17.58 16 24 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 26 H -0.29 -7.39 7.11 56.52 0.40 -6.99 16 27 C 0.12 2.07 6.11 -2.53 -0.02 2.05 16 28 C -0.10 -1.02 4.78 -26.65 -0.13 -1.15 16 29 C 0.06 0.45 5.42 -3.83 -0.02 0.43 16 30 H 0.22 0.87 7.80 -54.10 -0.42 0.45 16 31 H 0.06 0.34 8.08 -51.92 -0.42 -0.08 16 32 H 0.10 0.60 8.14 -51.93 -0.42 0.18 16 33 H 0.08 0.71 6.36 -51.93 -0.33 0.38 16 34 H 0.04 0.27 8.14 -51.93 -0.42 -0.15 16 35 H 0.08 0.65 5.82 -51.93 -0.30 0.34 16 36 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 37 H 0.09 0.80 7.87 -51.93 -0.41 0.39 16 38 H 0.07 0.57 6.04 -51.93 -0.31 0.26 16 39 H 0.06 0.57 8.07 -51.93 -0.42 0.15 16 40 H 0.08 0.76 8.14 -51.93 -0.42 0.34 16 41 H 0.08 0.84 8.02 -51.93 -0.42 0.42 16 42 H 0.04 0.51 7.65 -51.93 -0.40 0.11 16 43 H 0.04 0.76 8.14 -51.93 -0.42 0.34 16 44 H 0.05 1.05 8.14 -51.93 -0.42 0.62 16 45 H 0.38 10.11 7.80 -40.82 -0.32 9.79 16 46 H 0.25 7.53 8.31 -40.82 -0.34 7.19 16 47 H 0.08 1.73 8.00 -51.93 -0.42 1.31 16 48 H 0.07 1.31 8.04 -51.93 -0.42 0.89 16 49 H 0.08 0.80 8.14 -51.93 -0.42 0.38 16 50 H 0.08 1.07 7.91 -51.93 -0.41 0.66 16 51 H 0.04 0.26 8.14 -51.93 -0.42 -0.17 16 52 H 0.08 0.55 8.12 -51.93 -0.42 0.13 16 LS Contribution 409.67 15.07 6.17 6.17 Total: -1.00 -33.35 409.67 -10.13 -43.47 By element: Atomic # 1 Polarization: 16.13 SS G_CDS: -9.18 Total: 6.95 kcal Atomic # 6 Polarization: -2.01 SS G_CDS: -0.94 Total: -2.95 kcal Atomic # 7 Polarization: -59.52 SS G_CDS: -1.24 Total: -60.76 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.60 SS G_CDS: -5.02 Total: 17.58 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -33.35 -10.13 -43.47 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501090884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 75.104 kcal (2) G-P(sol) polarization free energy of solvation -33.346 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 41.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.126 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.472 kcal (6) G-S(sol) free energy of system = (1) + (5) 31.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.90 seconds