Wall clock time and date at job start Tue Mar 31 2020 17:34:29 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47198 * 179.97438 * 2 1 4 4 N 1.46894 * 109.47114 * 14.78411 * 3 2 1 5 5 C 1.46841 * 111.00500 * 45.79088 * 4 3 2 6 6 C 1.53033 * 109.52733 * 185.84069 * 5 4 3 7 7 C 1.53123 * 109.27671 * 300.81604 * 6 5 4 8 8 C 1.50701 * 109.52363 * 177.55583 * 7 6 5 9 9 O 1.21277 * 120.00257 * 251.11972 * 8 7 6 10 10 N 1.34786 * 119.99780 * 71.11960 * 8 7 6 11 11 C 1.47025 * 125.64635 * 4.12097 * 10 8 7 12 12 C 1.54325 * 107.26570 * 178.84823 * 11 10 8 13 13 C 1.55160 * 103.01971 * 338.14282 * 12 11 10 14 14 H 1.09004 * 111.00274 * 277.22891 * 13 12 11 15 15 C 1.53008 * 111.00346 * 153.37969 * 13 12 11 16 16 H 1.08994 * 109.46972 * 305.90392 * 15 13 12 17 17 C 1.52997 * 109.46895 * 65.90395 * 15 13 12 18 18 N 1.46501 * 109.46813 * 185.90069 * 15 13 12 19 19 C 1.36939 * 119.99858 * 155.00022 * 18 15 13 20 20 H 1.08000 * 119.99939 * 0.02562 * 19 18 15 21 21 C 1.38818 * 119.99879 * 180.02562 * 19 18 15 22 22 N 1.31611 * 119.99917 * 359.97438 * 21 19 18 23 23 Si 1.86796 * 119.99631 * 180.02562 * 21 19 18 24 24 H 1.48502 * 109.47577 * 359.97438 * 23 21 19 25 25 H 1.48501 * 109.47209 * 119.99961 * 23 21 19 26 26 H 1.48498 * 109.47034 * 239.99661 * 23 21 19 27 27 C 1.47420 * 125.64839 * 184.42638 * 10 8 7 28 28 C 1.53119 * 109.15750 * 57.65432 * 7 6 5 29 29 C 1.46852 * 110.99602 * 169.99683 * 4 3 2 30 30 H 4.40881 * 5.52220 * 179.97438 * 4 1 2 31 31 H 1.09009 * 109.46637 * 134.78009 * 3 2 1 32 32 H 1.08993 * 109.47188 * 254.77687 * 3 2 1 33 33 H 1.09007 * 109.45709 * 305.85540 * 5 4 3 34 34 H 1.09000 * 109.46391 * 65.82003 * 5 4 3 35 35 H 1.09001 * 109.50714 * 180.87555 * 6 5 4 36 36 H 1.09001 * 109.50455 * 60.75649 * 6 5 4 37 37 H 1.08998 * 109.57119 * 297.71619 * 7 6 5 38 38 H 1.09003 * 109.88422 * 298.39562 * 11 10 8 39 39 H 1.09003 * 109.87835 * 59.56006 * 11 10 8 40 40 H 1.08997 * 110.85387 * 219.67312 * 12 11 10 41 41 H 1.09005 * 110.66833 * 96.52031 * 12 11 10 42 42 H 1.09001 * 109.47310 * 295.01721 * 17 15 13 43 43 H 1.08994 * 109.47626 * 55.02390 * 17 15 13 44 44 H 1.09005 * 109.46790 * 175.02400 * 17 15 13 45 45 H 0.96999 * 119.99977 * 334.99799 * 18 15 13 46 46 H 0.97001 * 119.99788 * 179.97438 * 22 21 19 47 47 H 1.08996 * 110.36493 * 322.93370 * 27 10 8 48 48 H 1.09003 * 110.36207 * 85.14651 * 27 10 8 49 49 H 1.09005 * 109.50061 * 182.40750 * 28 7 6 50 50 H 1.08997 * 109.53653 * 62.31043 * 28 7 6 51 51 H 1.09001 * 109.46669 * 294.17029 * 29 4 3 52 52 H 1.09000 * 109.46135 * 54.15923 * 29 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 7 3.1362 -1.3382 -0.3534 5 6 2.4107 -1.8757 -1.5114 6 6 2.8440 -3.3222 -1.7601 7 6 4.3530 -3.3608 -2.0169 8 6 4.7958 -4.7893 -2.2031 9 8 5.4582 -5.3354 -1.3466 10 7 4.4555 -5.4599 -3.3217 11 6 3.7331 -4.8970 -4.4719 12 6 3.5953 -6.0206 -5.5208 13 6 4.7360 -6.9995 -5.1363 14 1 5.6880 -6.6742 -5.5559 15 6 4.4048 -8.4273 -5.5757 16 1 3.4338 -8.7153 -5.1729 17 6 4.3634 -8.4939 -7.1036 18 7 5.4326 -9.3431 -5.0746 19 6 5.1345 -10.6651 -4.8778 20 1 4.1419 -11.0326 -5.0924 21 6 6.1083 -11.5329 -4.4025 22 7 7.3180 -11.0851 -4.1415 23 14 5.7018 -13.3363 -4.1348 24 1 4.2841 -13.5840 -4.5009 25 1 6.5864 -14.1744 -4.9835 26 1 5.9117 -13.6843 -2.7065 27 6 4.7404 -6.8808 -3.5918 28 6 5.0828 -2.7513 -0.8167 29 6 4.5846 -1.3213 -0.5954 30 1 -1.0498 -0.0005 0.0001 31 1 3.0090 0.7248 -0.7295 32 1 3.0092 0.2706 0.9915 33 1 1.3391 -1.8463 -1.3141 34 1 2.6344 -1.2731 -2.3918 35 1 2.3168 -3.7157 -2.6292 36 1 2.6081 -3.9283 -0.8854 37 1 4.5855 -2.7875 -2.9143 38 1 2.7462 -4.5560 -4.1591 39 1 4.2983 -4.0658 -4.8938 40 1 3.7441 -5.6316 -6.5280 41 1 2.6240 -6.5082 -5.4368 42 1 3.5411 -7.8805 -7.4719 43 1 5.3042 -8.1219 -7.5092 44 1 4.2153 -9.5270 -7.4183 45 1 6.3242 -9.0131 -4.8822 46 1 7.9983 -11.6914 -3.8090 47 1 5.7173 -7.1543 -3.1930 48 1 3.9644 -7.5122 -3.1589 49 1 6.1551 -2.7369 -1.0118 50 1 4.8828 -3.3482 0.0731 51 1 4.7981 -0.7214 -1.4801 52 1 5.0919 -0.8896 0.2674 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001501090884.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:34:29 Heat of formation + Delta-G solvation = 9.263579 kcal Electronic energy + Delta-G solvation = -29068.590524 eV Core-core repulsion = 25261.516156 eV Total energy + Delta-G solvation = -3807.074368 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.94 seconds Orbital eigenvalues (eV) -41.54466 -39.93415 -38.88546 -36.79074 -35.58866 -34.29129 -33.16494 -31.97330 -31.72884 -30.01458 -29.79246 -28.20163 -25.95611 -25.35751 -24.19695 -23.67599 -22.85048 -21.16032 -21.00110 -20.05784 -19.13240 -18.96489 -18.16324 -17.45042 -17.05591 -16.58546 -16.24121 -16.04404 -15.86156 -15.67455 -15.45436 -15.23188 -14.68714 -14.66484 -14.36380 -14.12369 -14.06227 -13.76243 -13.70919 -13.56822 -13.30408 -13.10080 -13.01205 -12.89238 -12.69976 -12.48434 -12.35381 -12.19776 -12.13258 -12.02674 -11.80950 -11.65547 -11.57668 -11.51374 -11.36403 -11.27635 -11.05078 -10.96163 -10.73632 -9.64833 -9.27313 -8.99046 -7.93146 -5.20543 1.44853 1.46268 1.55558 1.57803 1.76840 1.93880 1.97828 2.55849 3.07283 3.35585 3.41731 3.47065 3.61162 3.70444 3.76510 3.82362 3.89301 4.12805 4.18990 4.23607 4.29140 4.36549 4.39893 4.44730 4.52514 4.57194 4.58297 4.64713 4.65370 4.68546 4.79076 4.85085 4.88409 4.91768 4.92483 4.98848 5.07730 5.11043 5.13733 5.15102 5.17353 5.26140 5.33312 5.39292 5.42498 5.53508 5.66388 6.03645 6.09314 6.29345 6.56245 6.71487 7.14076 7.34779 8.13212 8.33785 9.30822 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.019269 B = 0.002252 C = 0.002164 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1452.734471 B =12429.226900 C =12933.373136 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.215 4.215 3 C 0.162 3.838 4 N -0.555 5.555 5 C 0.064 3.936 6 C -0.101 4.101 7 C -0.090 4.090 8 C 0.519 3.481 9 O -0.595 6.595 10 N -0.617 5.617 11 C 0.095 3.905 12 C -0.113 4.113 13 C -0.092 4.092 14 H 0.074 0.926 15 C 0.178 3.822 16 H 0.046 0.954 17 C -0.152 4.152 18 N -0.739 5.739 19 C -0.228 4.228 20 H 0.077 0.923 21 C -0.082 4.082 22 N -0.972 5.972 23 Si 0.968 3.032 24 H -0.263 1.263 25 H -0.294 1.294 26 H -0.299 1.299 27 C 0.123 3.877 28 C -0.097 4.097 29 C 0.066 3.934 30 H 0.242 0.758 31 H 0.074 0.926 32 H 0.105 0.895 33 H 0.080 0.920 34 H 0.054 0.946 35 H 0.092 0.908 36 H 0.050 0.950 37 H 0.119 0.881 38 H 0.095 0.905 39 H 0.092 0.908 40 H 0.112 0.888 41 H 0.087 0.913 42 H 0.081 0.919 43 H 0.042 0.958 44 H 0.032 0.968 45 H 0.369 0.631 46 H 0.248 0.752 47 H 0.033 0.967 48 H 0.049 0.951 49 H 0.069 0.931 50 H 0.052 0.948 51 H 0.057 0.943 52 H 0.092 0.908 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.443 28.691 -0.049 32.121 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.216 4.216 3 C 0.037 3.963 4 N -0.281 5.281 5 C -0.064 4.064 6 C -0.139 4.139 7 C -0.111 4.111 8 C 0.310 3.690 9 O -0.476 6.476 10 N -0.350 5.350 11 C -0.026 4.026 12 C -0.151 4.151 13 C -0.112 4.112 14 H 0.093 0.907 15 C 0.070 3.930 16 H 0.064 0.936 17 C -0.212 4.212 18 N -0.378 5.378 19 C -0.360 4.360 20 H 0.095 0.905 21 C -0.274 4.274 22 N -0.624 5.624 23 Si 0.798 3.202 24 H -0.187 1.187 25 H -0.222 1.222 26 H -0.227 1.227 27 C 0.000 4.000 28 C -0.136 4.136 29 C -0.061 4.061 30 H 0.258 0.742 31 H 0.091 0.909 32 H 0.123 0.877 33 H 0.098 0.902 34 H 0.072 0.928 35 H 0.110 0.890 36 H 0.069 0.931 37 H 0.137 0.863 38 H 0.113 0.887 39 H 0.110 0.890 40 H 0.131 0.869 41 H 0.106 0.894 42 H 0.100 0.900 43 H 0.062 0.938 44 H 0.051 0.949 45 H 0.200 0.800 46 H 0.057 0.943 47 H 0.052 0.948 48 H 0.068 0.932 49 H 0.087 0.913 50 H 0.071 0.929 51 H 0.075 0.925 52 H 0.111 0.889 Dipole moment (debyes) X Y Z Total from point charges -14.276 27.993 0.854 31.435 hybrid contribution 0.872 -1.252 0.040 1.526 sum -13.405 26.741 0.894 29.926 Atomic orbital electron populations 1.25674 0.96837 0.98538 1.00079 1.23254 0.95060 1.01860 1.01403 1.19136 0.84447 0.89784 1.02970 1.61998 1.04654 1.22720 1.38684 1.22068 0.98783 0.93900 0.91646 1.21561 0.92292 0.97630 1.02393 1.21355 0.97898 0.90116 1.01727 1.21159 0.78542 0.89564 0.79754 1.90701 1.41408 1.71482 1.44020 1.48730 1.56955 1.11197 1.18141 1.22451 0.97649 0.97392 0.85090 1.22719 0.98161 0.94303 0.99879 1.22478 1.00372 0.95955 0.92381 0.90721 1.20443 0.91702 0.87548 0.93343 0.93634 1.22265 1.01344 1.00731 0.96853 1.42679 1.11066 1.05719 1.78374 1.19637 0.96150 0.86325 1.33930 0.90484 1.25541 0.96038 1.02264 1.03562 1.69832 1.03689 1.35363 1.53472 0.85138 0.77791 0.80732 0.76554 1.18724 1.22181 1.22706 1.21933 0.99262 0.81823 0.96954 1.21385 0.99270 0.96039 0.96877 1.22072 0.86722 0.95423 1.01910 0.74201 0.90862 0.87673 0.90150 0.92813 0.88982 0.93084 0.86330 0.88669 0.89023 0.86923 0.89389 0.90022 0.93842 0.94887 0.79983 0.94345 0.94843 0.93232 0.91262 0.92905 0.92484 0.88942 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -2.36 19.02 74.32 1.41 -0.94 16 2 C -0.22 -3.11 11.51 31.12 0.36 -2.75 16 3 C 0.16 1.95 5.77 84.50 0.49 2.44 16 4 N -0.55 -8.49 4.79 -907.47 -4.35 -12.83 16 5 C 0.06 0.89 5.07 86.33 0.44 1.33 16 6 C -0.10 -1.73 5.28 30.65 0.16 -1.57 16 7 C -0.09 -1.80 1.98 -11.46 -0.02 -1.82 16 8 C 0.52 16.05 7.09 87.66 0.62 16.67 16 9 O -0.60 -25.27 16.17 -3.02 -0.05 -25.32 16 10 N -0.62 -17.41 3.33 -811.79 -2.70 -20.11 16 11 C 0.10 1.61 6.16 86.73 0.53 2.14 16 12 C -0.11 -2.04 5.65 31.78 0.18 -1.86 16 13 C -0.09 -2.75 2.63 -9.40 -0.02 -2.78 16 14 H 0.07 2.34 8.14 -2.38 -0.02 2.32 16 15 C 0.18 6.54 2.40 44.99 0.11 6.64 16 16 H 0.05 1.71 8.05 -2.39 -0.02 1.69 16 17 C -0.15 -4.81 9.26 71.98 0.67 -4.15 16 18 N -0.74 -37.07 4.83 -322.93 -1.56 -38.63 16 19 C -0.23 -12.75 9.93 84.03 0.83 -11.91 16 20 H 0.08 4.11 7.83 -2.91 -0.02 4.09 16 21 C -0.08 -4.86 5.50 84.86 0.47 -4.39 16 22 N -0.97 -61.78 13.06 21.65 0.28 -61.50 16 23 Si 0.97 47.60 29.55 68.60 2.03 49.63 16 24 H -0.26 -11.99 7.11 99.48 0.71 -11.28 16 25 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 26 H -0.30 -14.96 7.11 99.48 0.71 -14.25 16 27 C 0.12 4.47 6.11 86.85 0.53 5.00 16 28 C -0.10 -2.02 4.78 30.65 0.15 -1.87 16 29 C 0.07 0.91 5.42 86.33 0.47 1.38 16 30 H 0.24 1.29 7.80 -4.43 -0.03 1.26 16 31 H 0.07 0.64 8.08 -2.38 -0.02 0.62 16 32 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 33 H 0.08 1.19 6.36 -2.38 -0.02 1.17 16 34 H 0.05 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.09 1.25 5.82 -2.39 -0.01 1.24 16 36 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 37 H 0.12 1.69 7.87 -2.39 -0.02 1.67 16 38 H 0.10 1.14 6.04 -2.39 -0.01 1.12 16 39 H 0.09 1.13 8.07 -2.39 -0.02 1.11 16 40 H 0.11 1.43 8.14 -2.39 -0.02 1.41 16 41 H 0.09 1.48 8.02 -2.38 -0.02 1.46 16 42 H 0.08 1.87 7.65 -2.39 -0.02 1.85 16 43 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.03 1.18 8.14 -2.38 -0.02 1.16 16 45 H 0.37 20.45 7.80 -92.71 -0.72 19.73 16 46 H 0.25 15.35 8.31 -92.71 -0.77 14.58 16 47 H 0.03 1.51 8.00 -2.39 -0.02 1.50 16 48 H 0.05 1.95 8.04 -2.39 -0.02 1.94 16 49 H 0.07 1.49 8.14 -2.38 -0.02 1.47 16 50 H 0.05 1.42 7.91 -2.39 -0.02 1.41 16 51 H 0.06 0.58 8.14 -2.39 -0.02 0.56 16 52 H 0.09 1.09 8.12 -2.39 -0.02 1.07 16 Total: -1.00 -79.09 409.67 1.18 -77.90 By element: Atomic # 1 Polarization: 29.14 SS G_CDS: 0.16 Total: 29.30 kcal Atomic # 6 Polarization: -5.81 SS G_CDS: 7.37 Total: 1.56 kcal Atomic # 7 Polarization: -124.75 SS G_CDS: -8.32 Total: -133.08 kcal Atomic # 8 Polarization: -25.27 SS G_CDS: -0.05 Total: -25.32 kcal Atomic # 14 Polarization: 47.60 SS G_CDS: 2.03 Total: 49.63 kcal Total: -79.09 1.18 -77.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501090884.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 87.167 kcal (2) G-P(sol) polarization free energy of solvation -79.088 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.080 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.184 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.904 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.264 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.94 seconds