Wall clock time and date at job start Tue Mar 31 2020 18:20:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 N 1.46897 * 109.46915 * 2 1 4 4 C 1.46900 * 111.00055 * 293.95578 * 3 2 1 5 5 C 1.46897 * 110.99754 * 170.00275 * 3 2 1 6 6 C 1.53002 * 109.47170 * 190.00133 * 5 3 2 7 7 C 1.50699 * 109.47480 * 180.02562 * 6 5 3 8 8 O 1.21281 * 119.99607 * 359.97438 * 7 6 5 9 9 N 1.34773 * 120.00460 * 179.97438 * 7 6 5 10 10 C 1.46502 * 120.00278 * 179.97438 * 9 7 6 11 11 C 1.50702 * 109.47089 * 179.97438 * 10 9 7 12 12 C 1.38250 * 120.00227 * 255.36268 * 11 10 9 13 13 C 1.38217 * 120.00234 * 179.97438 * 12 11 10 14 14 C 1.38260 * 119.99636 * 359.75026 * 13 12 11 15 15 C 1.38217 * 119.99749 * 0.50669 * 14 13 12 16 16 C 1.38219 * 119.99715 * 75.34713 * 11 10 9 17 17 C 1.50698 * 119.99946 * 359.97438 * 16 11 10 18 18 N 1.46497 * 109.46825 * 178.00413 * 17 16 11 19 19 C 1.46500 * 120.00504 * 273.78441 * 18 17 16 20 20 C 1.36938 * 119.99872 * 93.79199 * 18 17 16 21 21 H 1.08000 * 120.00013 * 21.82295 * 20 18 17 22 22 C 1.38815 * 120.00036 * 201.83864 * 20 18 17 23 23 N 1.31621 * 119.99915 * 15.21528 * 22 20 18 24 24 Si 1.86801 * 119.99971 * 195.22288 * 22 20 18 25 25 H 1.48501 * 109.47167 * 59.99116 * 24 22 20 26 26 H 1.48500 * 109.47159 * 179.97438 * 24 22 20 27 27 H 1.48503 * 109.46869 * 299.99444 * 24 22 20 28 28 H 1.09004 * 109.47368 * 59.99719 * 1 2 3 29 29 H 1.09002 * 109.47208 * 179.97438 * 1 2 3 30 30 H 1.08997 * 109.46804 * 300.00027 * 1 2 3 31 31 H 1.08997 * 109.46804 * 239.99973 * 2 1 3 32 32 H 1.09000 * 109.46918 * 120.00136 * 2 1 3 33 33 H 1.08995 * 109.47203 * 296.04428 * 4 3 2 34 34 H 1.08993 * 109.47268 * 56.04995 * 4 3 2 35 35 H 1.09006 * 109.46988 * 176.04844 * 4 3 2 36 36 H 1.09000 * 109.47296 * 70.00124 * 5 3 2 37 37 H 1.09002 * 109.47289 * 309.99944 * 5 3 2 38 38 H 1.09002 * 109.47534 * 59.99750 * 6 5 3 39 39 H 1.09002 * 109.46860 * 300.00074 * 6 5 3 40 40 H 0.97003 * 119.99741 * 359.97438 * 9 7 6 41 41 H 1.09000 * 109.47048 * 60.00269 * 10 9 7 42 42 H 1.08998 * 109.46958 * 299.99968 * 10 9 7 43 43 H 1.08000 * 120.00219 * 0.02562 * 12 11 10 44 44 H 1.07997 * 120.00101 * 180.02562 * 13 12 11 45 45 H 1.08000 * 119.99863 * 180.27664 * 14 13 12 46 46 H 1.08000 * 119.99713 * 179.77238 * 15 14 13 47 47 H 1.08996 * 109.47713 * 298.00770 * 17 16 11 48 48 H 1.09001 * 109.47179 * 58.01138 * 17 16 11 49 49 H 1.08996 * 109.47090 * 93.49168 * 19 18 17 50 50 H 1.08997 * 109.47544 * 213.49706 * 19 18 17 51 51 H 1.09010 * 109.46895 * 333.49580 * 19 18 17 52 52 H 0.97000 * 119.99801 * 180.02562 * 23 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0196 1.3850 0.0000 4 6 1.6701 2.0669 -1.2533 5 6 3.4685 1.4311 0.2381 6 6 3.8999 2.8791 0.4791 7 6 5.3863 2.9266 0.7227 8 8 6.0365 1.9029 0.7058 9 7 5.9931 4.1065 0.9594 10 6 7.4380 4.1525 1.1968 11 6 7.8631 5.5789 1.4328 12 6 8.5268 6.2757 0.4402 13 6 8.9162 7.5842 0.6565 14 6 8.6374 8.1978 1.8637 15 6 7.9785 7.4994 2.8580 16 6 7.5891 6.1907 2.6416 17 6 6.8648 5.4314 3.7233 18 7 6.7393 6.2769 4.9130 19 6 7.8223 6.3201 5.8987 20 6 5.6096 7.0269 5.1039 21 1 4.6902 6.7544 4.6071 22 6 5.6462 8.1377 5.9356 23 7 6.8030 8.6489 6.3004 24 14 4.0538 8.9068 6.5374 25 1 3.2814 7.9032 7.3128 26 1 4.3636 10.0711 7.4056 27 1 3.2506 9.3574 5.3725 28 1 -0.3634 0.5139 -0.8900 29 1 -0.3634 -1.0277 -0.0005 30 1 -0.3633 0.5138 0.8900 31 1 1.8933 -0.5138 -0.8900 32 1 1.8933 -0.5139 0.8900 33 1 2.1769 1.5791 -2.0859 34 1 0.5919 2.0179 -1.4051 35 1 1.9823 3.1099 -1.1987 36 1 3.9925 1.0359 -0.6322 37 1 3.7122 0.8289 1.1134 38 1 3.3759 3.2744 1.3494 39 1 3.6561 3.4813 -0.3962 40 1 5.4731 4.9252 0.9726 41 1 7.9619 3.7569 0.3267 42 1 7.6817 3.5508 2.0724 43 1 8.7404 5.7980 -0.5045 44 1 9.4344 8.1286 -0.1190 45 1 8.9377 9.2216 2.0311 46 1 7.7640 7.9776 3.8023 47 1 5.8723 5.1526 3.3693 48 1 7.4269 4.5319 3.9745 49 1 8.4896 7.1507 5.6692 50 1 7.4017 6.4564 6.8949 51 1 8.3814 5.3849 5.8652 52 1 6.8286 9.4248 6.8819 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001501668716.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:20:37 Heat of formation + Delta-G solvation = 13.159492 kcal Electronic energy + Delta-G solvation = -28853.941622 eV Core-core repulsion = 25047.036193 eV Total energy + Delta-G solvation = -3806.905428 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.26 seconds Orbital eigenvalues (eV) -39.93238 -38.93017 -37.85845 -35.57077 -34.78438 -32.62778 -31.94263 -31.02361 -29.87757 -29.57064 -27.13587 -26.34274 -25.78557 -25.27465 -22.94767 -22.15712 -21.07992 -20.82705 -20.14694 -19.93213 -17.39210 -16.75147 -16.26814 -16.14871 -15.75115 -15.46059 -15.40303 -14.95877 -14.51835 -14.45609 -14.12765 -13.85550 -13.65713 -13.42834 -13.20217 -13.07821 -12.89778 -12.55963 -12.38029 -12.31529 -12.14647 -12.08154 -11.96441 -11.56954 -11.53992 -11.32082 -11.12765 -11.03534 -10.88439 -10.78771 -10.52008 -10.44070 -10.30114 -10.06889 -9.87132 -9.84470 -8.95255 -8.59327 -8.58741 -8.29374 -8.01951 -6.86816 -5.79572 -3.24413 1.73048 2.00286 2.71771 3.24557 3.36248 3.42384 3.43562 3.82111 4.38471 4.46504 4.67427 4.73267 4.89524 4.92722 4.96905 5.09615 5.19879 5.23795 5.26153 5.28024 5.31667 5.39587 5.44367 5.54653 5.56609 5.60601 5.66429 5.74326 5.76582 5.81251 5.82458 5.86404 5.97604 6.02284 6.27689 6.33793 6.45185 6.51884 6.57457 6.72808 6.75341 6.79628 6.80493 6.92950 7.20431 7.33210 7.39281 7.61156 7.66618 7.69830 7.78498 8.29207 8.33158 9.17422 9.79832 10.28996 11.25612 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.009358 B = 0.003065 C = 0.002515 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2991.409151 B = 9133.688292 C =11130.872571 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.050 3.950 3 N -0.545 5.545 4 C 0.017 3.983 5 C 0.072 3.928 6 C -0.139 4.139 7 C 0.515 3.485 8 O -0.550 6.550 9 N -0.720 5.720 10 C 0.168 3.832 11 C -0.127 4.127 12 C -0.115 4.115 13 C -0.141 4.141 14 C -0.121 4.121 15 C -0.086 4.086 16 C -0.076 4.076 17 C 0.182 3.818 18 N -0.598 5.598 19 C 0.160 3.840 20 C -0.255 4.255 21 H 0.068 0.932 22 C 0.005 3.995 23 N -0.906 5.906 24 Si 0.902 3.098 25 H -0.284 1.284 26 H -0.291 1.291 27 H -0.283 1.283 28 H 0.054 0.946 29 H 0.057 0.943 30 H 0.064 0.936 31 H 0.032 0.968 32 H 0.075 0.925 33 H 0.024 0.976 34 H 0.070 0.930 35 H 0.070 0.930 36 H 0.041 0.959 37 H 0.083 0.917 38 H 0.105 0.895 39 H 0.091 0.909 40 H 0.404 0.596 41 H 0.068 0.932 42 H 0.075 0.925 43 H 0.111 0.889 44 H 0.111 0.889 45 H 0.113 0.887 46 H 0.162 0.838 47 H 0.061 0.939 48 H 0.050 0.950 49 H 0.030 0.970 50 H 0.045 0.955 51 H -0.002 1.002 52 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.847 -10.297 -14.590 18.503 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.077 4.077 3 N -0.269 5.269 4 C -0.131 4.131 5 C -0.056 4.056 6 C -0.179 4.179 7 C 0.301 3.699 8 O -0.428 6.428 9 N -0.371 5.371 10 C 0.046 3.954 11 C -0.128 4.128 12 C -0.134 4.134 13 C -0.159 4.159 14 C -0.139 4.139 15 C -0.104 4.104 16 C -0.080 4.080 17 C 0.054 3.946 18 N -0.320 5.320 19 C 0.015 3.985 20 C -0.385 4.385 21 H 0.085 0.915 22 C -0.194 4.194 23 N -0.551 5.551 24 Si 0.732 3.268 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.210 1.210 28 H 0.073 0.927 29 H 0.076 0.924 30 H 0.083 0.917 31 H 0.050 0.950 32 H 0.094 0.906 33 H 0.043 0.957 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.059 0.941 37 H 0.101 0.899 38 H 0.123 0.877 39 H 0.110 0.890 40 H 0.239 0.761 41 H 0.086 0.914 42 H 0.093 0.907 43 H 0.129 0.871 44 H 0.129 0.871 45 H 0.131 0.869 46 H 0.180 0.820 47 H 0.079 0.921 48 H 0.068 0.932 49 H 0.048 0.952 50 H 0.064 0.936 51 H 0.016 0.984 52 H 0.064 0.936 Dipole moment (debyes) X Y Z Total from point charges -4.571 -10.660 -14.059 18.226 hybrid contribution -0.516 0.781 -0.415 1.024 sum -5.087 -9.879 -14.474 18.248 Atomic orbital electron populations 1.21814 0.94824 1.01510 1.02549 1.22076 0.96081 0.88644 1.00926 1.61984 1.14012 1.16105 1.34837 1.22503 1.01488 0.99461 0.89689 1.21800 0.86322 0.95628 1.01823 1.21639 0.92403 0.99117 1.04776 1.20587 0.89902 0.83301 0.76113 1.90687 1.66971 1.33541 1.51625 1.46132 1.09313 1.09509 1.72164 1.20082 0.80241 0.93676 1.01447 1.19651 1.03001 0.95140 0.95039 1.20818 0.99904 0.94705 0.97971 1.20976 1.02098 0.95213 0.97585 1.21288 0.99136 0.99697 0.93809 1.21805 0.94016 0.93916 1.00682 1.21299 0.96493 0.95534 0.94669 1.19911 0.97044 0.92054 0.85544 1.43942 1.18709 1.50640 1.18678 1.20841 0.89788 0.94961 0.92899 1.19137 0.87932 1.04941 1.26472 0.91456 1.24939 0.96583 0.96391 1.01478 1.70026 1.22885 1.23701 1.38506 0.86370 0.83235 0.78488 0.78663 1.21097 1.21683 1.20970 0.92721 0.92352 0.91687 0.94974 0.90608 0.95699 0.91120 0.91089 0.94066 0.89865 0.87683 0.89033 0.76091 0.91418 0.90679 0.87108 0.87132 0.86886 0.82034 0.92083 0.93215 0.95195 0.93618 0.98357 0.93577 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.08 9.84 37.16 0.37 -0.71 16 2 C 0.05 0.43 5.68 -3.82 -0.02 0.41 16 3 N -0.54 -5.28 4.76 -242.92 -1.16 -6.44 16 4 C 0.02 0.14 9.13 60.06 0.55 0.68 16 5 C 0.07 0.78 4.25 -3.82 -0.02 0.76 16 6 C -0.14 -1.44 5.62 -27.88 -0.16 -1.60 16 7 C 0.51 6.85 7.83 -10.99 -0.09 6.76 16 8 O -0.55 -9.15 15.98 5.56 0.09 -9.06 16 9 N -0.72 -9.29 5.02 -61.47 -0.31 -9.60 16 10 C 0.17 2.37 5.15 -5.19 -0.03 2.35 16 11 C -0.13 -1.98 5.25 -104.62 -0.55 -2.53 16 12 C -0.12 -1.67 9.67 -39.58 -0.38 -2.06 16 13 C -0.14 -2.11 10.05 -39.58 -0.40 -2.50 16 14 C -0.12 -2.10 10.05 -39.58 -0.40 -2.49 16 15 C -0.09 -1.75 9.14 -39.59 -0.36 -2.11 16 16 C -0.08 -1.42 5.88 -104.63 -0.62 -2.03 16 17 C 0.18 3.60 5.00 -5.20 -0.03 3.58 16 18 N -0.60 -14.17 1.73 -182.50 -0.32 -14.48 16 19 C 0.16 3.79 8.61 59.85 0.52 4.30 16 20 C -0.26 -6.61 9.17 -15.06 -0.14 -6.74 16 21 H 0.07 1.72 7.84 -52.49 -0.41 1.30 16 22 C 0.00 0.12 5.04 -17.43 -0.09 0.03 16 23 N -0.91 -24.82 10.78 55.49 0.60 -24.22 16 24 Si 0.90 21.10 29.58 -169.99 -5.03 16.07 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -6.90 7.11 56.52 0.40 -6.50 16 27 H -0.28 -6.56 7.11 56.52 0.40 -6.15 16 28 H 0.05 0.37 6.47 -51.93 -0.34 0.04 16 29 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.03 0.27 8.12 -51.93 -0.42 -0.16 16 32 H 0.08 0.65 7.93 -51.93 -0.41 0.24 16 33 H 0.02 0.20 8.14 -51.93 -0.42 -0.22 16 34 H 0.07 0.51 6.30 -51.93 -0.33 0.19 16 35 H 0.07 0.54 6.47 -51.93 -0.34 0.21 16 36 H 0.04 0.47 8.08 -51.93 -0.42 0.05 16 37 H 0.08 0.98 7.89 -51.93 -0.41 0.57 16 38 H 0.10 1.08 8.14 -51.93 -0.42 0.65 16 39 H 0.09 0.79 6.55 -51.93 -0.34 0.45 16 40 H 0.40 4.85 8.46 -40.82 -0.35 4.51 16 41 H 0.07 0.91 7.95 -51.93 -0.41 0.50 16 42 H 0.08 1.14 7.22 -51.93 -0.37 0.77 16 43 H 0.11 1.35 8.00 -52.49 -0.42 0.93 16 44 H 0.11 1.37 8.06 -52.49 -0.42 0.94 16 45 H 0.11 1.80 8.06 -52.49 -0.42 1.38 16 46 H 0.16 3.92 5.76 -52.49 -0.30 3.62 16 47 H 0.06 1.17 7.50 -51.93 -0.39 0.78 16 48 H 0.05 0.95 7.30 -51.93 -0.38 0.57 16 49 H 0.03 0.75 6.81 -51.93 -0.35 0.40 16 50 H 0.05 1.16 7.21 -51.93 -0.37 0.79 16 51 H 0.00 -0.05 7.89 -51.92 -0.41 -0.46 16 52 H 0.25 6.85 8.31 -40.82 -0.34 6.51 16 LS Contribution 411.30 15.07 6.20 6.20 Total: -1.00 -29.16 411.30 -10.61 -39.77 By element: Atomic # 1 Polarization: 14.52 SS G_CDS: -8.85 Total: 5.67 kcal Atomic # 6 Polarization: -2.07 SS G_CDS: -1.83 Total: -3.91 kcal Atomic # 7 Polarization: -53.56 SS G_CDS: -1.18 Total: -54.74 kcal Atomic # 8 Polarization: -9.15 SS G_CDS: 0.09 Total: -9.06 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.03 Total: 16.07 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -29.16 -10.61 -39.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001501668716.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.927 kcal (2) G-P(sol) polarization free energy of solvation -29.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 23.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.607 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.768 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.159 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.26 seconds