Wall clock time and date at job start Tue Mar 31 2020 18:13:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46864 * 2 1 4 4 C 1.36941 * 120.00094 * 275.23883 * 3 2 1 5 5 H 1.08003 * 119.99686 * 37.70109 * 4 3 2 6 6 C 1.38804 * 119.99978 * 217.71108 * 4 3 2 7 7 N 1.31621 * 120.00607 * 21.63009 * 6 4 3 8 8 Si 1.86800 * 119.99973 * 201.63713 * 6 4 3 9 9 H 1.48502 * 109.47367 * 59.99665 * 8 6 4 10 10 H 1.48501 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47018 * 299.99689 * 8 6 4 12 12 C 1.46491 * 119.99982 * 95.23665 * 3 2 1 13 13 C 1.52999 * 109.47512 * 269.99927 * 12 3 2 14 14 C 1.53040 * 109.46437 * 175.00317 * 13 12 3 15 15 C 1.53194 * 109.31343 * 181.38817 * 14 13 12 16 16 N 1.46928 * 108.77447 * 305.36060 * 15 14 13 17 17 C 1.34777 * 120.62957 * 233.58596 * 16 15 14 18 18 O 1.21277 * 120.00307 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99800 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47217 * 180.02562 * 19 17 16 21 21 N 1.46497 * 109.47228 * 179.97438 * 20 19 17 22 22 C 1.36340 * 125.63403 * 269.68776 * 21 20 19 23 23 C 1.34857 * 108.21513 * 179.83250 * 22 21 20 24 24 C 1.40883 * 107.41765 * 0.42586 * 23 22 21 25 25 C 1.34852 * 107.42027 * 359.73728 * 24 23 22 26 26 C 1.46922 * 118.73707 * 53.86272 * 16 15 14 27 27 C 1.53047 * 109.45955 * 295.07018 * 13 12 3 28 28 H 1.08997 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47421 * 300.00053 * 1 2 3 30 30 H 1.09004 * 109.46915 * 60.00472 * 1 2 3 31 31 H 1.09002 * 109.46969 * 240.00236 * 2 1 3 32 32 H 1.08996 * 109.47244 * 119.99673 * 2 1 3 33 33 H 0.96988 * 120.00552 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47226 * 149.99937 * 12 3 2 35 35 H 1.08998 * 109.47543 * 30.00019 * 12 3 2 36 36 H 1.08998 * 109.46032 * 55.02733 * 13 12 3 37 37 H 1.09000 * 109.49899 * 61.43331 * 14 13 12 38 38 H 1.09006 * 109.52101 * 301.34984 * 14 13 12 39 39 H 1.09000 * 109.58684 * 185.57234 * 15 14 13 40 40 H 1.09001 * 109.70641 * 65.21648 * 15 14 13 41 41 H 1.08999 * 109.47140 * 60.00142 * 19 17 16 42 42 H 1.09005 * 109.47088 * 300.00063 * 19 17 16 43 43 H 1.09005 * 109.46895 * 299.99878 * 20 19 17 44 44 H 1.08999 * 109.47339 * 59.99338 * 20 19 17 45 45 H 1.08002 * 125.89161 * 359.96667 * 22 21 20 46 46 H 1.08001 * 126.28721 * 180.16953 * 23 22 21 47 47 H 1.08002 * 126.29472 * 179.73463 * 24 23 22 48 48 H 1.07998 * 125.89122 * 180.02562 * 25 24 23 49 49 H 1.09004 * 109.59068 * 65.92549 * 26 16 15 50 50 H 1.09006 * 109.59072 * 186.35141 * 26 16 15 51 51 H 1.08994 * 109.49787 * 298.56412 * 27 13 12 52 52 H 1.08998 * 109.49748 * 58.66252 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1444 2.0629 -1.1810 5 1 1.4116 1.9285 -1.9629 6 6 3.2141 2.9263 -1.3731 7 7 4.3069 2.7911 -0.6521 8 14 3.1027 4.2806 -2.6549 9 1 1.9690 5.1816 -2.3259 10 1 4.3670 5.0595 -2.6633 11 1 2.8833 3.6777 -3.9941 12 6 2.3716 2.0332 1.2634 13 6 1.1403 2.7390 1.8349 14 6 1.4758 3.3138 3.2130 15 6 0.2311 3.9895 3.7969 16 7 -0.2641 4.9821 2.8334 17 6 -0.4686 6.2604 3.2083 18 8 -0.2431 6.6009 4.3503 19 6 -0.9774 7.2666 2.2085 20 6 -1.1205 8.6310 2.8857 21 7 -1.6145 9.6093 1.9136 22 6 -0.8393 10.3925 1.1107 23 6 -1.6533 11.1570 0.3547 24 6 -2.9793 10.8411 0.7107 25 6 -2.9254 9.8914 1.6666 26 6 -0.5380 4.5532 1.4552 27 6 0.7206 3.8725 0.8960 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0542 3.3946 -0.7861 34 1 3.1603 2.7646 1.0867 35 1 2.7231 1.2843 1.9730 36 1 0.3229 2.0241 1.9288 37 1 2.2763 4.0473 3.1162 38 1 1.7974 2.5095 3.8747 39 1 0.4895 4.4856 4.7325 40 1 -0.5407 3.2420 3.9808 41 1 -1.9477 6.9446 1.8306 42 1 -0.2726 7.3445 1.3805 43 1 -1.8250 8.5535 3.7139 44 1 -0.1500 8.9528 3.2634 45 1 0.2403 10.3979 1.0832 46 1 -1.3452 11.8816 -0.3845 47 1 -3.8746 11.2791 0.2947 48 1 -3.7741 9.4330 2.1522 49 1 -1.3703 3.8493 1.4500 50 1 -0.7872 5.4214 0.8449 51 1 1.5282 4.6006 0.8210 52 1 0.5043 3.4654 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001505400227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:13 Heat of formation + Delta-G solvation = 26.139718 kcal Electronic energy + Delta-G solvation = -29740.211004 eV Core-core repulsion = 25933.868441 eV Total energy + Delta-G solvation = -3806.342563 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.15 seconds Orbital eigenvalues (eV) -41.25056 -40.10371 -37.74976 -35.76745 -34.23225 -32.81748 -31.90559 -30.96351 -29.64638 -28.90342 -28.86006 -26.75266 -24.70744 -24.03550 -22.72207 -22.29876 -20.55389 -20.45247 -20.06288 -19.79419 -18.73548 -17.83420 -16.70073 -16.51402 -15.95231 -15.84978 -14.93793 -14.62448 -14.36526 -14.14545 -13.97423 -13.76413 -13.67117 -13.45531 -13.19084 -13.10241 -12.89880 -12.66333 -12.47323 -12.34371 -12.22983 -12.15509 -12.04214 -11.70609 -11.48615 -11.38153 -11.16479 -10.93467 -10.81159 -10.62445 -10.47297 -10.34093 -10.11732 -9.97856 -9.80454 -9.57955 -9.45270 -8.72258 -8.51401 -8.47951 -8.25256 -6.57495 -5.82219 -3.40265 2.16298 2.56108 2.70028 2.98097 3.19004 3.30146 3.37427 3.39121 4.42325 4.45309 4.50559 4.56473 4.95809 5.03522 5.13052 5.13155 5.16030 5.23805 5.29740 5.37853 5.46573 5.48573 5.51773 5.57253 5.59850 5.68732 5.70319 5.87131 5.97978 6.01509 6.19709 6.23013 6.23224 6.25558 6.35001 6.36587 6.44162 6.58786 6.62018 6.80738 6.87377 6.90476 6.91839 6.95516 7.11288 7.14691 7.20621 7.27450 7.45043 7.68234 7.77746 8.11721 8.48669 9.16894 9.79416 10.39096 11.16748 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003355 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.293756 B = 8343.213560 C = 9761.982091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.141 3.859 3 N -0.584 5.584 4 C -0.257 4.257 5 H 0.058 0.942 6 C 0.018 3.982 7 N -0.885 5.885 8 Si 0.886 3.114 9 H -0.281 1.281 10 H -0.291 1.291 11 H -0.281 1.281 12 C 0.153 3.847 13 C -0.102 4.102 14 C -0.128 4.128 15 C 0.114 3.886 16 N -0.601 5.601 17 C 0.519 3.481 18 O -0.555 6.555 19 C -0.157 4.157 20 C 0.123 3.877 21 N -0.448 5.448 22 C -0.014 4.014 23 C -0.204 4.204 24 C -0.204 4.204 25 C -0.017 4.017 26 C 0.100 3.900 27 C -0.114 4.114 28 H 0.033 0.967 29 H 0.043 0.957 30 H 0.048 0.952 31 H 0.041 0.959 32 H 0.031 0.969 33 H 0.254 0.746 34 H 0.092 0.908 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.068 0.932 39 H 0.085 0.915 40 H 0.063 0.937 41 H 0.099 0.901 42 H 0.102 0.898 43 H 0.096 0.904 44 H 0.097 0.903 45 H 0.160 0.840 46 H 0.133 0.867 47 H 0.133 0.867 48 H 0.159 0.841 49 H 0.066 0.934 50 H 0.076 0.924 51 H 0.057 0.943 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.774 7.909 6.345 15.538 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C 0.014 3.986 3 N -0.304 5.304 4 C -0.387 4.387 5 H 0.075 0.925 6 C -0.183 4.183 7 N -0.527 5.527 8 Si 0.715 3.285 9 H -0.207 1.207 10 H -0.217 1.217 11 H -0.207 1.207 12 C 0.026 3.974 13 C -0.123 4.123 14 C -0.167 4.167 15 C -0.008 4.008 16 N -0.334 5.334 17 C 0.306 3.694 18 O -0.434 6.434 19 C -0.198 4.198 20 C 0.000 4.000 21 N -0.123 5.123 22 C -0.144 4.144 23 C -0.229 4.229 24 C -0.229 4.229 25 C -0.147 4.147 26 C -0.022 4.022 27 C -0.152 4.152 28 H 0.052 0.948 29 H 0.062 0.938 30 H 0.067 0.933 31 H 0.060 0.940 32 H 0.050 0.950 33 H 0.065 0.935 34 H 0.110 0.890 35 H 0.039 0.961 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.087 0.913 39 H 0.104 0.896 40 H 0.081 0.919 41 H 0.117 0.883 42 H 0.120 0.880 43 H 0.114 0.886 44 H 0.115 0.885 45 H 0.177 0.823 46 H 0.151 0.849 47 H 0.151 0.849 48 H 0.176 0.824 49 H 0.085 0.915 50 H 0.094 0.906 51 H 0.076 0.924 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges -11.327 7.887 7.173 15.555 hybrid contribution -0.036 0.652 -0.859 1.079 sum -11.364 8.539 6.314 15.553 Atomic orbital electron populations 1.22366 1.00205 0.98824 1.01054 1.20829 0.91632 0.87553 0.98571 1.43745 1.76078 1.08072 1.02528 1.18858 1.04447 1.21187 0.94159 0.92456 1.25115 0.94200 1.01251 0.97709 1.69992 1.03044 1.37265 1.42376 0.86646 0.77049 0.82761 0.82039 1.20701 1.21671 1.20711 1.20934 0.94540 0.96298 0.85606 1.21814 1.01292 0.96705 0.92439 1.21951 0.96745 0.99919 0.98078 1.21632 0.96338 0.90455 0.92378 1.48186 1.64207 1.08630 1.12348 1.20266 0.77765 0.82811 0.88509 1.90679 1.53146 1.79064 1.20539 1.22038 1.04212 0.94060 0.99488 1.21549 1.02433 0.86112 0.89858 1.44219 1.06176 1.30698 1.31243 1.21900 0.97139 0.97861 0.97460 1.20901 0.93103 1.04625 1.04268 1.20888 0.97461 1.02469 1.02047 1.21837 0.85933 1.03324 1.03608 1.22139 0.99657 0.99670 0.80744 1.21956 0.94925 0.97367 1.00982 0.94764 0.93783 0.93309 0.94037 0.95021 0.93546 0.88997 0.96050 0.92601 0.91809 0.91342 0.89644 0.91912 0.88275 0.87963 0.88551 0.88459 0.82279 0.84894 0.84941 0.82402 0.91538 0.90564 0.92376 0.88219 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.78 10.21 37.16 0.38 -2.40 16 2 C 0.14 2.80 6.44 -4.04 -0.03 2.77 16 3 N -0.58 -13.22 2.31 -173.24 -0.40 -13.62 16 4 C -0.26 -6.39 7.35 -15.06 -0.11 -6.50 16 5 H 0.06 1.45 7.92 -52.48 -0.42 1.03 16 6 C 0.02 0.46 4.95 -17.43 -0.09 0.38 16 7 N -0.88 -24.16 11.50 55.49 0.64 -23.52 16 8 Si 0.89 20.34 29.61 -169.99 -5.03 15.31 16 9 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 10 H -0.29 -6.84 7.11 56.52 0.40 -6.44 16 11 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 12 C 0.15 3.24 4.84 -4.05 -0.02 3.22 16 13 C -0.10 -1.74 2.36 -90.58 -0.21 -1.96 16 14 C -0.13 -1.94 5.36 -26.61 -0.14 -2.08 16 15 C 0.11 1.57 6.43 -3.71 -0.02 1.55 16 16 N -0.60 -8.32 2.97 -172.50 -0.51 -8.83 16 17 C 0.52 7.12 7.70 -10.98 -0.08 7.04 16 18 O -0.55 -9.05 15.39 5.56 0.09 -8.96 16 19 C -0.16 -1.70 4.37 -27.88 -0.12 -1.82 16 20 C 0.12 1.26 5.38 -4.05 -0.02 1.24 16 21 N -0.45 -4.89 2.75 -117.13 -0.32 -5.21 16 22 C -0.01 -0.16 11.43 -16.75 -0.19 -0.35 16 23 C -0.20 -2.32 10.86 -39.78 -0.43 -2.75 16 24 C -0.20 -2.24 10.86 -39.78 -0.43 -2.67 16 25 C -0.02 -0.18 11.43 -16.75 -0.19 -0.37 16 26 C 0.10 1.35 6.37 -3.49 -0.02 1.33 16 27 C -0.11 -1.97 4.97 -26.38 -0.13 -2.10 16 28 H 0.03 0.50 8.14 -51.93 -0.42 0.08 16 29 H 0.04 0.72 6.47 -51.93 -0.34 0.38 16 30 H 0.05 0.86 8.14 -51.93 -0.42 0.44 16 31 H 0.04 0.86 8.08 -51.93 -0.42 0.44 16 32 H 0.03 0.60 7.83 -51.93 -0.41 0.19 16 33 H 0.25 6.81 8.31 -40.82 -0.34 6.48 16 34 H 0.09 2.27 5.54 -51.93 -0.29 1.98 16 35 H 0.02 0.44 7.86 -51.93 -0.41 0.04 16 36 H 0.06 0.95 6.47 -51.93 -0.34 0.61 16 37 H 0.06 1.06 8.14 -51.93 -0.42 0.64 16 38 H 0.07 0.96 8.14 -51.93 -0.42 0.53 16 39 H 0.09 1.22 7.01 -51.93 -0.36 0.86 16 40 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 41 H 0.10 0.95 7.93 -51.93 -0.41 0.54 16 42 H 0.10 1.13 7.70 -51.93 -0.40 0.73 16 43 H 0.10 0.95 8.10 -51.93 -0.42 0.53 16 44 H 0.10 1.03 8.10 -51.93 -0.42 0.61 16 45 H 0.16 1.50 8.06 -52.49 -0.42 1.08 16 46 H 0.13 1.30 8.06 -52.49 -0.42 0.88 16 47 H 0.13 1.22 8.06 -52.49 -0.42 0.80 16 48 H 0.16 1.28 8.06 -52.49 -0.42 0.86 16 49 H 0.07 0.84 8.14 -51.93 -0.42 0.42 16 50 H 0.08 0.92 5.93 -51.93 -0.31 0.61 16 51 H 0.06 1.12 8.14 -51.93 -0.42 0.70 16 52 H 0.10 1.95 6.26 -51.93 -0.32 1.63 16 LS Contribution 405.88 15.07 6.12 6.12 Total: -1.00 -28.79 405.88 -10.34 -39.13 By element: Atomic # 1 Polarization: 14.11 SS G_CDS: -9.05 Total: 5.06 kcal Atomic # 6 Polarization: -3.61 SS G_CDS: -1.87 Total: -5.48 kcal Atomic # 7 Polarization: -50.58 SS G_CDS: -0.60 Total: -51.18 kcal Atomic # 8 Polarization: -9.05 SS G_CDS: 0.09 Total: -8.96 kcal Atomic # 14 Polarization: 20.34 SS G_CDS: -5.03 Total: 15.31 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -28.79 -10.34 -39.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505400227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.273 kcal (2) G-P(sol) polarization free energy of solvation -28.790 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 36.482 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.343 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.133 kcal (6) G-S(sol) free energy of system = (1) + (5) 26.140 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.15 seconds