Wall clock time and date at job start Tue Mar 31 2020 18:13:12 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46502 * 109.46864 * 2 1 4 4 C 1.36941 * 120.00094 * 275.23883 * 3 2 1 5 5 H 1.08003 * 119.99686 * 37.70109 * 4 3 2 6 6 C 1.38804 * 119.99978 * 217.71108 * 4 3 2 7 7 N 1.31621 * 120.00607 * 21.63009 * 6 4 3 8 8 Si 1.86800 * 119.99973 * 201.63713 * 6 4 3 9 9 H 1.48502 * 109.47367 * 59.99665 * 8 6 4 10 10 H 1.48501 * 109.47294 * 179.97438 * 8 6 4 11 11 H 1.48496 * 109.47018 * 299.99689 * 8 6 4 12 12 C 1.46491 * 119.99982 * 95.23665 * 3 2 1 13 13 C 1.52999 * 109.47512 * 269.99927 * 12 3 2 14 14 C 1.53040 * 109.46437 * 175.00317 * 13 12 3 15 15 C 1.53194 * 109.31343 * 181.38817 * 14 13 12 16 16 N 1.46928 * 108.77447 * 305.36060 * 15 14 13 17 17 C 1.34777 * 120.62957 * 233.58596 * 16 15 14 18 18 O 1.21277 * 120.00307 * 0.02562 * 17 16 15 19 19 C 1.50701 * 119.99800 * 180.02562 * 17 16 15 20 20 C 1.52995 * 109.47217 * 180.02562 * 19 17 16 21 21 N 1.46497 * 109.47228 * 179.97438 * 20 19 17 22 22 C 1.36340 * 125.63403 * 269.68776 * 21 20 19 23 23 C 1.34857 * 108.21513 * 179.83250 * 22 21 20 24 24 C 1.40883 * 107.41765 * 0.42586 * 23 22 21 25 25 C 1.34852 * 107.42027 * 359.73728 * 24 23 22 26 26 C 1.46922 * 118.73707 * 53.86272 * 16 15 14 27 27 C 1.53047 * 109.45955 * 295.07018 * 13 12 3 28 28 H 1.08997 * 109.46890 * 179.97438 * 1 2 3 29 29 H 1.08992 * 109.47421 * 300.00053 * 1 2 3 30 30 H 1.09004 * 109.46915 * 60.00472 * 1 2 3 31 31 H 1.09002 * 109.46969 * 240.00236 * 2 1 3 32 32 H 1.08996 * 109.47244 * 119.99673 * 2 1 3 33 33 H 0.96988 * 120.00552 * 180.02562 * 7 6 4 34 34 H 1.09001 * 109.47226 * 149.99937 * 12 3 2 35 35 H 1.08998 * 109.47543 * 30.00019 * 12 3 2 36 36 H 1.08998 * 109.46032 * 55.02733 * 13 12 3 37 37 H 1.09000 * 109.49899 * 61.43331 * 14 13 12 38 38 H 1.09006 * 109.52101 * 301.34984 * 14 13 12 39 39 H 1.09000 * 109.58684 * 185.57234 * 15 14 13 40 40 H 1.09001 * 109.70641 * 65.21648 * 15 14 13 41 41 H 1.08999 * 109.47140 * 60.00142 * 19 17 16 42 42 H 1.09005 * 109.47088 * 300.00063 * 19 17 16 43 43 H 1.09005 * 109.46895 * 299.99878 * 20 19 17 44 44 H 1.08999 * 109.47339 * 59.99338 * 20 19 17 45 45 H 1.08002 * 125.89161 * 359.96667 * 22 21 20 46 46 H 1.08001 * 126.28721 * 180.16953 * 23 22 21 47 47 H 1.08002 * 126.29472 * 179.73463 * 24 23 22 48 48 H 1.07998 * 125.89122 * 180.02562 * 25 24 23 49 49 H 1.09004 * 109.59068 * 65.92549 * 26 16 15 50 50 H 1.09006 * 109.59072 * 186.35141 * 26 16 15 51 51 H 1.08994 * 109.49787 * 298.56412 * 27 13 12 52 52 H 1.08998 * 109.49748 * 58.66252 * 27 13 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.1444 2.0629 -1.1810 5 1 1.4116 1.9285 -1.9629 6 6 3.2141 2.9263 -1.3731 7 7 4.3069 2.7911 -0.6521 8 14 3.1027 4.2806 -2.6549 9 1 1.9690 5.1816 -2.3259 10 1 4.3670 5.0595 -2.6633 11 1 2.8833 3.6777 -3.9941 12 6 2.3716 2.0332 1.2634 13 6 1.1403 2.7390 1.8349 14 6 1.4758 3.3138 3.2130 15 6 0.2311 3.9895 3.7969 16 7 -0.2641 4.9821 2.8334 17 6 -0.4686 6.2604 3.2083 18 8 -0.2431 6.6009 4.3503 19 6 -0.9774 7.2666 2.2085 20 6 -1.1205 8.6310 2.8857 21 7 -1.6145 9.6093 1.9136 22 6 -0.8393 10.3925 1.1107 23 6 -1.6533 11.1570 0.3547 24 6 -2.9793 10.8411 0.7107 25 6 -2.9254 9.8914 1.6666 26 6 -0.5380 4.5532 1.4552 27 6 0.7206 3.8725 0.8960 28 1 -0.3633 -1.0276 -0.0005 29 1 -0.3634 0.5138 0.8899 30 1 -0.3633 0.5138 -0.8901 31 1 1.8933 -0.5138 -0.8900 32 1 1.8934 -0.5138 0.8900 33 1 5.0542 3.3946 -0.7861 34 1 3.1603 2.7646 1.0867 35 1 2.7231 1.2843 1.9730 36 1 0.3229 2.0241 1.9288 37 1 2.2763 4.0473 3.1162 38 1 1.7974 2.5095 3.8747 39 1 0.4895 4.4856 4.7325 40 1 -0.5407 3.2420 3.9808 41 1 -1.9477 6.9446 1.8306 42 1 -0.2726 7.3445 1.3805 43 1 -1.8250 8.5535 3.7139 44 1 -0.1500 8.9528 3.2634 45 1 0.2403 10.3979 1.0832 46 1 -1.3452 11.8816 -0.3845 47 1 -3.8746 11.2791 0.2947 48 1 -3.7741 9.4330 2.1522 49 1 -1.3703 3.8493 1.4500 50 1 -0.7872 5.4214 0.8449 51 1 1.5282 4.6006 0.8210 52 1 0.5043 3.4654 -0.0917 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001505400227.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 18:13:12 Heat of formation + Delta-G solvation = 13.827833 kcal Electronic energy + Delta-G solvation = -29740.744888 eV Core-core repulsion = 25933.868441 eV Total energy + Delta-G solvation = -3806.876447 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -42.06841 -41.21213 -39.11841 -37.29529 -35.12003 -34.15849 -33.72648 -32.14377 -30.71656 -30.36868 -29.64800 -28.27398 -26.09644 -25.27659 -24.02177 -23.57843 -22.01613 -21.35493 -21.28738 -20.78197 -19.89757 -18.76688 -18.50715 -17.53962 -17.01126 -16.88376 -16.75871 -15.82218 -15.56589 -15.52519 -15.28871 -15.08379 -14.83529 -14.61034 -14.33280 -14.30723 -14.01057 -13.88539 -13.75382 -13.58146 -13.21663 -13.15343 -13.03054 -12.95546 -12.91721 -12.84053 -12.57746 -12.34136 -12.30779 -12.16158 -12.05646 -11.92409 -11.64228 -11.57329 -11.20591 -11.01048 -10.87093 -10.40107 -9.66654 -9.54533 -9.06042 -8.46302 -7.75113 -5.36840 1.34470 1.45307 1.48851 1.49648 1.52803 1.80606 2.16162 2.22843 2.53117 3.29044 3.47351 3.69170 3.70177 3.72164 3.92970 4.08511 4.17345 4.22395 4.23701 4.29893 4.38255 4.40882 4.43244 4.49455 4.55592 4.66471 4.72477 4.78670 4.80407 4.81738 4.83695 4.88374 4.91022 4.93655 5.11767 5.15822 5.24523 5.35426 5.38717 5.40776 5.42551 5.43932 5.50734 5.65483 5.71633 5.79383 5.95758 6.10331 6.34026 6.35501 6.48990 6.53280 7.04106 7.25565 7.96017 8.49026 9.18878 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011196 B = 0.003355 C = 0.002868 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2500.293756 B = 8343.213560 C = 9761.982091 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.135 3.865 3 N -0.598 5.598 4 C -0.247 4.247 5 H 0.054 0.946 6 C -0.025 4.025 7 N -0.918 5.918 8 Si 0.934 3.066 9 H -0.270 1.270 10 H -0.302 1.302 11 H -0.279 1.279 12 C 0.155 3.845 13 C -0.088 4.088 14 C -0.120 4.120 15 C 0.119 3.881 16 N -0.605 5.605 17 C 0.518 3.482 18 O -0.582 6.582 19 C -0.147 4.147 20 C 0.128 3.872 21 N -0.451 5.451 22 C -0.031 4.031 23 C -0.220 4.220 24 C -0.221 4.221 25 C -0.021 4.021 26 C 0.111 3.889 27 C -0.108 4.108 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.038 0.962 31 H 0.026 0.974 32 H 0.040 0.960 33 H 0.247 0.753 34 H 0.056 0.944 35 H 0.018 0.982 36 H 0.068 0.932 37 H 0.040 0.960 38 H 0.081 0.919 39 H 0.081 0.919 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.100 0.900 43 H 0.103 0.897 44 H 0.090 0.910 45 H 0.169 0.831 46 H 0.141 0.859 47 H 0.146 0.854 48 H 0.182 0.818 49 H 0.087 0.913 50 H 0.094 0.906 51 H 0.027 0.973 52 H 0.077 0.923 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.495 7.843 6.773 17.818 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.208 4.208 2 C 0.009 3.991 3 N -0.319 5.319 4 C -0.377 4.377 5 H 0.072 0.928 6 C -0.222 4.222 7 N -0.563 5.563 8 Si 0.762 3.238 9 H -0.195 1.195 10 H -0.228 1.228 11 H -0.205 1.205 12 C 0.029 3.971 13 C -0.109 4.109 14 C -0.159 4.159 15 C -0.004 4.004 16 N -0.337 5.337 17 C 0.307 3.693 18 O -0.463 6.463 19 C -0.188 4.188 20 C 0.006 3.994 21 N -0.126 5.126 22 C -0.160 4.160 23 C -0.245 4.245 24 C -0.245 4.245 25 C -0.150 4.150 26 C -0.011 4.011 27 C -0.146 4.146 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.057 0.943 31 H 0.044 0.956 32 H 0.058 0.942 33 H 0.056 0.944 34 H 0.074 0.926 35 H 0.037 0.963 36 H 0.086 0.914 37 H 0.059 0.941 38 H 0.100 0.900 39 H 0.099 0.901 40 H 0.103 0.897 41 H 0.137 0.863 42 H 0.119 0.881 43 H 0.121 0.879 44 H 0.109 0.891 45 H 0.187 0.813 46 H 0.159 0.841 47 H 0.164 0.836 48 H 0.199 0.801 49 H 0.106 0.894 50 H 0.112 0.888 51 H 0.046 0.954 52 H 0.095 0.905 Dipole moment (debyes) X Y Z Total from point charges -14.082 7.808 7.594 17.802 hybrid contribution 0.841 0.592 -0.984 1.424 sum -13.241 8.400 6.609 17.016 Atomic orbital electron populations 1.22152 0.97225 1.00549 1.00898 1.20962 0.93852 0.85987 0.98258 1.43962 1.76353 1.09274 1.02321 1.18989 1.03523 1.20619 0.94618 0.92842 1.25616 0.94057 1.03121 0.99437 1.70123 1.03687 1.38106 1.44364 0.85871 0.76662 0.80883 0.80344 1.19544 1.22841 1.20468 1.20839 0.95477 0.95523 0.85271 1.21579 0.99431 0.96620 0.93226 1.21855 0.97029 0.99814 0.97213 1.21592 0.96013 0.90774 0.91982 1.48256 1.64130 1.08886 1.12381 1.20698 0.77082 0.82924 0.88575 1.90670 1.54310 1.79405 1.21930 1.21979 1.04906 0.93424 0.98460 1.21484 1.02362 0.85720 0.89829 1.44292 1.06407 1.30702 1.31239 1.22188 0.97873 0.98206 0.97771 1.21189 0.93622 1.05012 1.04676 1.21194 0.97846 1.02963 1.02539 1.22286 0.86348 1.03054 1.03328 1.22055 0.97923 1.00582 0.80562 1.21778 0.95878 0.96771 1.00165 0.92089 0.92967 0.94322 0.95600 0.94153 0.94381 0.92647 0.96345 0.91357 0.94088 0.90009 0.90072 0.89741 0.86340 0.88132 0.87869 0.89109 0.81329 0.84083 0.83625 0.80054 0.89449 0.88767 0.95396 0.90473 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.64 10.21 71.98 0.73 -3.91 16 2 C 0.13 5.24 6.44 86.38 0.56 5.79 16 3 N -0.60 -27.08 2.31 -702.02 -1.62 -28.70 16 4 C -0.25 -12.39 7.35 84.03 0.62 -11.77 16 5 H 0.05 2.70 7.92 -2.91 -0.02 2.68 16 6 C -0.02 -1.30 4.95 84.86 0.42 -0.88 16 7 N -0.92 -51.83 11.50 21.65 0.25 -51.59 16 8 Si 0.93 42.37 29.61 68.60 2.03 44.40 16 9 H -0.27 -11.62 7.11 99.48 0.71 -10.91 16 10 H -0.30 -14.15 7.11 99.48 0.71 -13.44 16 11 H -0.28 -12.44 7.11 99.48 0.71 -11.74 16 12 C 0.16 6.65 4.84 86.38 0.42 7.07 16 13 C -0.09 -2.93 2.36 -10.76 -0.03 -2.96 16 14 C -0.12 -3.52 5.36 30.67 0.16 -3.36 16 15 C 0.12 3.00 6.43 86.36 0.56 3.56 16 16 N -0.60 -15.35 2.97 -818.05 -2.43 -17.78 16 17 C 0.52 13.19 7.70 87.66 0.67 13.86 16 18 O -0.58 -18.13 15.39 -3.02 -0.05 -18.18 16 19 C -0.15 -2.83 4.37 29.85 0.13 -2.70 16 20 C 0.13 2.40 5.38 86.38 0.46 2.87 16 21 N -0.45 -9.04 2.75 -524.48 -1.44 -10.48 16 22 C -0.03 -0.66 11.43 83.22 0.95 0.29 16 23 C -0.22 -4.76 10.86 22.14 0.24 -4.52 16 24 C -0.22 -4.48 10.86 22.14 0.24 -4.24 16 25 C -0.02 -0.39 11.43 83.21 0.95 0.56 16 26 C 0.11 2.70 6.37 86.51 0.55 3.25 16 27 C -0.11 -3.63 4.97 30.82 0.15 -3.47 16 28 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 29 H 0.05 1.54 6.47 -2.39 -0.02 1.52 16 30 H 0.04 1.27 8.14 -2.39 -0.02 1.25 16 31 H 0.03 1.06 8.08 -2.39 -0.02 1.04 16 32 H 0.04 1.48 7.83 -2.39 -0.02 1.46 16 33 H 0.25 13.77 8.31 -92.72 -0.77 13.00 16 34 H 0.06 2.84 5.54 -2.39 -0.01 2.83 16 35 H 0.02 0.77 7.86 -2.39 -0.02 0.75 16 36 H 0.07 2.14 6.47 -2.39 -0.02 2.13 16 37 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 38 H 0.08 2.17 8.14 -2.38 -0.02 2.15 16 39 H 0.08 2.18 7.01 -2.39 -0.02 2.16 16 40 H 0.08 1.82 8.14 -2.39 -0.02 1.80 16 41 H 0.12 1.85 7.93 -2.39 -0.02 1.83 16 42 H 0.10 2.02 7.70 -2.38 -0.02 2.01 16 43 H 0.10 1.81 8.10 -2.38 -0.02 1.79 16 44 H 0.09 1.83 8.10 -2.39 -0.02 1.81 16 45 H 0.17 3.07 8.06 -2.91 -0.02 3.05 16 46 H 0.14 2.65 8.06 -2.91 -0.02 2.62 16 47 H 0.15 2.43 8.06 -2.91 -0.02 2.40 16 48 H 0.18 2.38 8.06 -2.91 -0.02 2.36 16 49 H 0.09 1.84 8.14 -2.39 -0.02 1.82 16 50 H 0.09 1.98 5.93 -2.38 -0.01 1.97 16 51 H 0.03 1.08 8.14 -2.39 -0.02 1.07 16 52 H 0.08 2.96 6.26 -2.39 -0.01 2.95 16 Total: -1.00 -63.02 405.88 5.42 -57.60 By element: Atomic # 1 Polarization: 24.41 SS G_CDS: 0.87 Total: 25.29 kcal Atomic # 6 Polarization: -8.35 SS G_CDS: 7.80 Total: -0.55 kcal Atomic # 7 Polarization: -103.31 SS G_CDS: -5.24 Total: -108.55 kcal Atomic # 8 Polarization: -18.13 SS G_CDS: -0.05 Total: -18.18 kcal Atomic # 14 Polarization: 42.37 SS G_CDS: 2.03 Total: 44.40 kcal Total: -63.02 5.42 -57.60 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001505400227.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.425 kcal (2) G-P(sol) polarization free energy of solvation -63.017 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.408 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.420 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -57.597 kcal (6) G-S(sol) free energy of system = (1) + (5) 13.828 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds