Wall clock time and date at job start Tue Mar 31 2020 17:53:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47681 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99982 * 2 1 3 5 5 N 1.46503 * 109.47241 * 174.99499 * 4 2 1 6 6 C 1.34778 * 119.99923 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99835 * 179.97438 * 6 5 4 9 9 N 1.46902 * 109.47134 * 180.02562 * 8 6 5 10 10 C 1.46903 * 111.00187 * 293.96154 * 9 8 6 11 11 C 1.46901 * 111.00014 * 170.00056 * 9 8 6 12 12 C 1.53000 * 109.46898 * 190.00074 * 11 9 8 13 13 C 1.50698 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.38237 * 119.99616 * 269.72780 * 13 12 11 15 15 C 1.38236 * 119.99575 * 179.76402 * 14 13 12 16 16 C 1.38240 * 120.00249 * 0.50833 * 15 14 13 17 17 C 1.38234 * 119.99751 * 359.74695 * 16 15 14 18 18 C 1.38233 * 120.00104 * 89.99822 * 13 12 11 19 19 N 1.46505 * 109.46734 * 239.99878 * 2 1 3 20 20 C 1.46505 * 119.99981 * 299.99927 * 19 2 1 21 21 C 1.36936 * 119.99934 * 119.72885 * 19 2 1 22 22 H 1.07996 * 120.00015 * 328.26726 * 21 19 2 23 23 C 1.38814 * 120.00078 * 148.26969 * 21 19 2 24 24 N 1.31618 * 120.00242 * 151.75159 * 23 21 19 25 25 Si 1.86803 * 119.99712 * 331.74983 * 23 21 19 26 26 H 1.48501 * 109.47174 * 95.27801 * 25 23 21 27 27 H 1.48501 * 109.46797 * 215.27068 * 25 23 21 28 28 H 1.48498 * 109.47399 * 335.27436 * 25 23 21 29 29 H 1.09004 * 109.46598 * 300.00541 * 1 2 3 30 30 H 1.08994 * 109.46832 * 59.99831 * 1 2 3 31 31 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47175 * 295.00003 * 4 2 1 33 33 H 1.09010 * 109.47053 * 54.99611 * 4 2 1 34 34 H 0.96995 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08994 * 109.47446 * 300.00036 * 8 6 5 36 36 H 1.09001 * 109.46875 * 60.00622 * 8 6 5 37 37 H 1.08997 * 109.47263 * 59.99445 * 10 9 8 38 38 H 1.08997 * 109.47125 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.46373 * 299.99521 * 10 9 8 40 40 H 1.08995 * 109.47166 * 310.00313 * 11 9 8 41 41 H 1.09001 * 109.46900 * 70.00389 * 11 9 8 42 42 H 1.09005 * 109.47285 * 300.00093 * 12 11 9 43 43 H 1.09001 * 109.47088 * 60.00430 * 12 11 9 44 44 H 1.07999 * 120.00182 * 359.97438 * 14 13 12 45 45 H 1.08004 * 120.00016 * 180.22749 * 15 14 13 46 46 H 1.07996 * 119.99858 * 179.72538 * 16 15 14 47 47 H 1.07997 * 120.00056 * 179.97438 * 17 16 15 48 48 H 1.07991 * 120.00258 * 0.02562 * 18 13 12 49 49 H 1.08999 * 109.46542 * 95.11689 * 20 19 2 50 50 H 1.08997 * 109.47197 * 215.11626 * 20 19 2 51 51 H 1.08999 * 109.47122 * 335.11873 * 20 19 2 52 52 H 0.96995 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5699 -1.8833 3.1399 8 6 5.6749 -1.5371 2.1304 9 7 6.1646 -2.2295 3.3299 10 6 5.9206 -1.4283 4.5368 11 6 7.5889 -2.5649 3.1996 12 6 8.0006 -3.4944 4.3431 13 6 9.4619 -3.8380 4.2098 14 6 9.8471 -4.9491 3.4832 15 6 11.1877 -5.2615 3.3569 16 6 12.1426 -4.4687 3.9658 17 6 11.7570 -3.3606 4.6967 18 6 10.4166 -3.0452 4.8187 19 7 2.0183 -0.6907 -1.1962 20 6 1.6643 -2.0933 -1.4280 21 6 2.8009 -0.0236 -2.1005 22 1 2.6632 1.0362 -2.2556 23 6 3.7714 -0.7097 -2.8178 24 7 4.1287 -0.2872 -4.0120 25 14 4.5701 -2.2325 -2.0880 26 1 3.8650 -3.4442 -2.5777 27 1 5.9958 -2.2892 -2.4998 28 1 4.4845 -2.1748 -0.6066 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6053 -1.7199 1.2952 34 1 3.9824 -0.4630 0.4315 35 1 5.9629 -2.1008 1.2431 36 1 6.1099 -0.5388 2.0838 37 1 4.8504 -1.2535 4.6466 38 1 6.2932 -1.9640 5.4100 39 1 6.4378 -0.4728 4.4492 40 1 7.7587 -3.0647 2.2460 41 1 8.1825 -1.6517 3.2421 42 1 7.8308 -2.9946 5.2968 43 1 7.4070 -4.4076 4.3006 44 1 9.1008 -5.5712 3.0115 45 1 11.4890 -6.1276 2.7862 46 1 13.1897 -4.7154 3.8708 47 1 12.5029 -2.7415 5.1728 48 1 10.1154 -2.1799 5.3902 49 1 0.7888 -2.1448 -2.0753 50 1 2.4999 -2.6048 -1.9057 51 1 1.4407 -2.5738 -0.4755 52 1 4.8065 -0.7669 -4.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506001449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:17 Heat of formation + Delta-G solvation = 24.091075 kcal Electronic energy + Delta-G solvation = -28878.383547 eV Core-core repulsion = 25071.952148 eV Total energy + Delta-G solvation = -3806.431399 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -39.74942 -39.36632 -37.45737 -36.58127 -33.72665 -33.26390 -32.17160 -31.12062 -30.29451 -29.16981 -28.01880 -26.22823 -25.98731 -24.64128 -23.21157 -22.80247 -21.96628 -20.73584 -19.95662 -19.32630 -17.08434 -17.01760 -16.72303 -16.05613 -15.93131 -15.65757 -15.45357 -15.30412 -14.77265 -14.58629 -14.29774 -14.02263 -13.65828 -13.39413 -13.11061 -13.06387 -12.99731 -12.81520 -12.51452 -12.33961 -12.33204 -12.22183 -12.03304 -11.97376 -11.66241 -11.42305 -11.34946 -11.20335 -11.13648 -10.86290 -10.81279 -10.53650 -10.15800 -10.04330 -9.61250 -9.41080 -9.15780 -8.91351 -8.55888 -8.46539 -8.29696 -7.01130 -6.11155 -3.43226 1.11103 1.16462 3.04695 3.25628 3.32847 3.42848 3.43978 3.59376 4.10395 4.43586 4.59142 4.66600 4.77598 4.87694 4.89884 4.90198 5.03638 5.13455 5.20250 5.28369 5.30476 5.31017 5.41267 5.43406 5.47198 5.55361 5.61376 5.69246 5.77742 5.78433 5.84916 5.93401 5.96278 6.03661 6.11269 6.16757 6.22941 6.25210 6.27810 6.32980 6.42818 6.52656 6.68107 6.72397 6.77068 6.78418 6.88620 7.02253 7.03415 7.90805 8.08582 8.25514 8.71349 8.87576 9.62273 10.02324 11.04261 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002693 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.578184 B =10394.415642 C =11772.714311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.157 3.843 3 H 0.077 0.923 4 C 0.105 3.895 5 N -0.709 5.709 6 C 0.512 3.488 7 O -0.543 6.543 8 C 0.033 3.967 9 N -0.523 5.523 10 C 0.017 3.983 11 C 0.061 3.939 12 C -0.077 4.077 13 C -0.078 4.078 14 C -0.115 4.115 15 C -0.119 4.119 16 C -0.127 4.127 17 C -0.120 4.120 18 C -0.118 4.118 19 N -0.602 5.602 20 C 0.113 3.887 21 C -0.276 4.276 22 H 0.080 0.920 23 C 0.036 3.964 24 N -0.890 5.890 25 Si 0.869 3.131 26 H -0.289 1.289 27 H -0.306 1.306 28 H -0.259 1.259 29 H 0.048 0.952 30 H 0.060 0.940 31 H 0.049 0.951 32 H 0.057 0.943 33 H 0.058 0.942 34 H 0.412 0.588 35 H 0.102 0.898 36 H 0.062 0.938 37 H 0.090 0.910 38 H 0.067 0.933 39 H 0.018 0.982 40 H 0.076 0.924 41 H 0.036 0.964 42 H 0.074 0.926 43 H 0.083 0.917 44 H 0.123 0.877 45 H 0.121 0.879 46 H 0.119 0.881 47 H 0.120 0.880 48 H 0.120 0.880 49 H 0.017 0.983 50 H 0.038 0.962 51 H 0.033 0.967 52 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.463 -4.662 16.732 20.277 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C 0.049 3.951 3 H 0.095 0.905 4 C -0.021 4.021 5 N -0.362 5.362 6 C 0.297 3.703 7 O -0.421 6.421 8 C -0.098 4.098 9 N -0.247 5.247 10 C -0.131 4.131 11 C -0.067 4.067 12 C -0.115 4.115 13 C -0.079 4.079 14 C -0.133 4.133 15 C -0.137 4.137 16 C -0.145 4.145 17 C -0.138 4.138 18 C -0.136 4.136 19 N -0.326 5.326 20 C -0.031 4.031 21 C -0.404 4.404 22 H 0.097 0.903 23 C -0.165 4.165 24 N -0.531 5.531 25 Si 0.700 3.300 26 H -0.218 1.218 27 H -0.234 1.234 28 H -0.184 1.184 29 H 0.067 0.933 30 H 0.079 0.921 31 H 0.068 0.932 32 H 0.076 0.924 33 H 0.076 0.924 34 H 0.249 0.751 35 H 0.120 0.880 36 H 0.080 0.920 37 H 0.108 0.892 38 H 0.085 0.915 39 H 0.037 0.963 40 H 0.094 0.906 41 H 0.054 0.946 42 H 0.092 0.908 43 H 0.101 0.899 44 H 0.141 0.859 45 H 0.139 0.861 46 H 0.137 0.863 47 H 0.138 0.862 48 H 0.138 0.862 49 H 0.035 0.965 50 H 0.056 0.944 51 H 0.052 0.948 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges 9.860 -5.412 17.273 20.612 hybrid contribution 1.320 -0.090 -0.381 1.377 sum 11.180 -5.501 16.892 20.990 Atomic orbital electron populations 1.22141 0.96983 1.01407 1.01033 1.20771 0.92832 0.96353 0.85113 0.90488 1.21932 0.79997 1.01009 0.99140 1.46052 1.08194 1.58582 1.23331 1.20289 0.89340 0.77988 0.82643 1.90603 1.70015 1.47868 1.33588 1.22035 0.93682 0.99090 0.94968 1.61617 1.16116 1.44907 1.02058 1.22614 1.03891 0.94463 0.92134 1.22122 0.87371 0.98053 0.99181 1.20610 0.91099 1.00852 0.98931 1.19915 0.95512 0.95148 0.97304 1.21138 0.96184 0.97150 0.98836 1.21175 0.93132 0.99746 0.99628 1.21148 0.99423 0.95676 0.98275 1.21141 0.95976 0.97426 0.99259 1.21073 0.92854 0.99511 1.00126 1.44115 1.58452 1.08843 1.21230 1.21272 0.98256 0.85873 0.97733 1.18785 1.11519 0.95205 1.14864 0.90264 1.25347 0.97647 0.97639 0.95904 1.69958 1.32123 1.41704 1.09288 0.87175 0.77849 0.83833 0.81126 1.21752 1.23405 1.18382 0.93334 0.92114 0.93169 0.92434 0.92388 0.75074 0.87977 0.91993 0.89159 0.91461 0.96318 0.90553 0.94606 0.90754 0.89880 0.85877 0.86103 0.86268 0.86200 0.86210 0.96518 0.94358 0.94782 0.92684 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 19. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.41 9.19 37.16 0.34 -2.07 16 2 C 0.16 2.80 2.87 -67.93 -0.19 2.61 16 3 H 0.08 1.39 7.89 -51.93 -0.41 0.98 16 4 C 0.11 1.81 4.93 -4.04 -0.02 1.79 16 5 N -0.71 -12.67 4.57 -60.29 -0.28 -12.95 16 6 C 0.51 9.06 7.55 -10.99 -0.08 8.98 16 7 O -0.54 -10.80 14.31 5.55 0.08 -10.72 16 8 C 0.03 0.50 5.45 -4.98 -0.03 0.47 16 9 N -0.52 -7.28 4.50 -244.37 -1.10 -8.38 16 10 C 0.02 0.21 9.02 60.07 0.54 0.75 16 11 C 0.06 0.70 4.94 -3.82 -0.02 0.68 16 12 C -0.08 -0.78 5.28 -27.88 -0.15 -0.93 16 13 C -0.08 -0.78 5.13 -104.62 -0.54 -1.32 16 14 C -0.12 -1.13 9.70 -39.58 -0.38 -1.51 16 15 C -0.12 -1.07 10.05 -39.58 -0.40 -1.46 16 16 C -0.13 -1.08 10.05 -39.58 -0.40 -1.48 16 17 C -0.12 -1.03 10.05 -39.58 -0.40 -1.43 16 18 C -0.12 -1.09 9.70 -39.58 -0.38 -1.48 16 19 N -0.60 -13.01 1.92 -173.48 -0.33 -13.34 16 20 C 0.11 2.39 8.78 59.85 0.53 2.92 16 21 C -0.28 -7.04 9.57 -15.06 -0.14 -7.18 16 22 H 0.08 2.19 8.06 -52.49 -0.42 1.77 16 23 C 0.04 0.96 5.25 -17.43 -0.09 0.87 16 24 N -0.89 -25.84 13.97 55.49 0.78 -25.06 16 25 Si 0.87 20.40 24.83 -169.99 -4.22 16.18 16 26 H -0.29 -7.01 6.60 56.52 0.37 -6.64 16 27 H -0.31 -7.42 7.11 56.52 0.40 -7.02 16 28 H -0.26 -5.54 5.29 56.52 0.30 -5.24 16 29 H 0.05 0.63 8.14 -51.93 -0.42 0.21 16 30 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 31 H 0.05 0.76 7.67 -51.93 -0.40 0.37 16 32 H 0.06 0.92 8.14 -51.93 -0.42 0.50 16 33 H 0.06 1.05 6.87 -51.92 -0.36 0.70 16 34 H 0.41 7.71 6.67 -40.82 -0.27 7.44 16 35 H 0.10 1.56 7.81 -51.93 -0.41 1.15 16 36 H 0.06 0.83 8.12 -51.93 -0.42 0.41 16 37 H 0.09 1.36 5.88 -51.93 -0.31 1.05 16 38 H 0.07 0.74 6.30 -51.93 -0.33 0.41 16 39 H 0.02 0.21 8.14 -51.93 -0.42 -0.21 16 40 H 0.08 0.91 7.93 -51.93 -0.41 0.50 16 41 H 0.04 0.40 8.12 -51.93 -0.42 -0.02 16 42 H 0.07 0.70 6.42 -51.93 -0.33 0.37 16 43 H 0.08 0.88 8.08 -51.93 -0.42 0.46 16 44 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 45 H 0.12 0.86 8.06 -52.48 -0.42 0.44 16 46 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 47 H 0.12 0.78 8.06 -52.49 -0.42 0.36 16 48 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 49 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 50 H 0.04 0.88 2.81 -51.93 -0.15 0.74 16 51 H 0.03 0.65 6.53 -51.93 -0.34 0.31 16 52 H 0.26 7.30 8.31 -40.82 -0.34 6.96 16 LS Contribution 405.08 15.07 6.10 6.10 Total: -1.00 -30.27 405.08 -9.67 -39.94 By element: Atomic # 1 Polarization: 16.90 SS G_CDS: -8.89 Total: 8.02 kcal Atomic # 6 Polarization: 2.02 SS G_CDS: -1.82 Total: 0.20 kcal Atomic # 7 Polarization: -58.80 SS G_CDS: -0.93 Total: -59.73 kcal Atomic # 8 Polarization: -10.80 SS G_CDS: 0.08 Total: -10.72 kcal Atomic # 14 Polarization: 20.40 SS G_CDS: -4.22 Total: 16.18 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -30.27 -9.67 -39.94 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506001449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.036 kcal (2) G-P(sol) polarization free energy of solvation -30.273 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 33.763 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.672 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.945 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds