Wall clock time and date at job start Tue Mar 31 2020 17:53:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08998 * 109.47681 * 2 1 4 4 C 1.52999 * 109.47200 * 119.99982 * 2 1 3 5 5 N 1.46503 * 109.47241 * 174.99499 * 4 2 1 6 6 C 1.34778 * 119.99923 * 179.97438 * 5 4 2 7 7 O 1.21284 * 119.99745 * 0.02562 * 6 5 4 8 8 C 1.50698 * 119.99835 * 179.97438 * 6 5 4 9 9 N 1.46902 * 109.47134 * 180.02562 * 8 6 5 10 10 C 1.46903 * 111.00187 * 293.96154 * 9 8 6 11 11 C 1.46901 * 111.00014 * 170.00056 * 9 8 6 12 12 C 1.53000 * 109.46898 * 190.00074 * 11 9 8 13 13 C 1.50698 * 109.47030 * 180.02562 * 12 11 9 14 14 C 1.38237 * 119.99616 * 269.72780 * 13 12 11 15 15 C 1.38236 * 119.99575 * 179.76402 * 14 13 12 16 16 C 1.38240 * 120.00249 * 0.50833 * 15 14 13 17 17 C 1.38234 * 119.99751 * 359.74695 * 16 15 14 18 18 C 1.38233 * 120.00104 * 89.99822 * 13 12 11 19 19 N 1.46505 * 109.46734 * 239.99878 * 2 1 3 20 20 C 1.46505 * 119.99981 * 299.99927 * 19 2 1 21 21 C 1.36936 * 119.99934 * 119.72885 * 19 2 1 22 22 H 1.07996 * 120.00015 * 328.26726 * 21 19 2 23 23 C 1.38814 * 120.00078 * 148.26969 * 21 19 2 24 24 N 1.31618 * 120.00242 * 151.75159 * 23 21 19 25 25 Si 1.86803 * 119.99712 * 331.74983 * 23 21 19 26 26 H 1.48501 * 109.47174 * 95.27801 * 25 23 21 27 27 H 1.48501 * 109.46797 * 215.27068 * 25 23 21 28 28 H 1.48498 * 109.47399 * 335.27436 * 25 23 21 29 29 H 1.09004 * 109.46598 * 300.00541 * 1 2 3 30 30 H 1.08994 * 109.46832 * 59.99831 * 1 2 3 31 31 H 1.08997 * 109.47212 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.47175 * 295.00003 * 4 2 1 33 33 H 1.09010 * 109.47053 * 54.99611 * 4 2 1 34 34 H 0.96995 * 119.99902 * 359.97438 * 5 4 2 35 35 H 1.08994 * 109.47446 * 300.00036 * 8 6 5 36 36 H 1.09001 * 109.46875 * 60.00622 * 8 6 5 37 37 H 1.08997 * 109.47263 * 59.99445 * 10 9 8 38 38 H 1.08997 * 109.47125 * 180.02562 * 10 9 8 39 39 H 1.09003 * 109.46373 * 299.99521 * 10 9 8 40 40 H 1.08995 * 109.47166 * 310.00313 * 11 9 8 41 41 H 1.09001 * 109.46900 * 70.00389 * 11 9 8 42 42 H 1.09005 * 109.47285 * 300.00093 * 12 11 9 43 43 H 1.09001 * 109.47088 * 60.00430 * 12 11 9 44 44 H 1.07999 * 120.00182 * 359.97438 * 14 13 12 45 45 H 1.08004 * 120.00016 * 180.22749 * 15 14 13 46 46 H 1.07996 * 119.99858 * 179.72538 * 16 15 14 47 47 H 1.07997 * 120.00056 * 179.97438 * 17 16 15 48 48 H 1.07991 * 120.00258 * 0.02562 * 18 13 12 49 49 H 1.08999 * 109.46542 * 95.11689 * 20 19 2 50 50 H 1.08997 * 109.47197 * 215.11626 * 20 19 2 51 51 H 1.08999 * 109.47122 * 335.11873 * 20 19 2 52 52 H 0.96995 * 119.99793 * 180.02562 * 24 23 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7212 1.2492 5 7 3.5001 -0.8265 1.1905 6 6 4.1731 -1.4284 2.1911 7 8 3.5699 -1.8833 3.1399 8 6 5.6749 -1.5371 2.1304 9 7 6.1646 -2.2295 3.3299 10 6 5.9206 -1.4283 4.5368 11 6 7.5889 -2.5649 3.1996 12 6 8.0006 -3.4944 4.3431 13 6 9.4619 -3.8380 4.2098 14 6 9.8471 -4.9491 3.4832 15 6 11.1877 -5.2615 3.3569 16 6 12.1426 -4.4687 3.9658 17 6 11.7570 -3.3606 4.6967 18 6 10.4166 -3.0452 4.8187 19 7 2.0183 -0.6907 -1.1962 20 6 1.6643 -2.0933 -1.4280 21 6 2.8009 -0.0236 -2.1005 22 1 2.6632 1.0362 -2.2556 23 6 3.7714 -0.7097 -2.8178 24 7 4.1287 -0.2872 -4.0120 25 14 4.5701 -2.2325 -2.0880 26 1 3.8650 -3.4442 -2.5777 27 1 5.9958 -2.2892 -2.4998 28 1 4.4845 -2.1748 -0.6066 29 1 -0.3633 0.5140 0.8900 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0276 0.0005 32 1 1.7517 -0.1583 2.1369 33 1 1.6053 -1.7199 1.2952 34 1 3.9824 -0.4630 0.4315 35 1 5.9629 -2.1008 1.2431 36 1 6.1099 -0.5388 2.0838 37 1 4.8504 -1.2535 4.6466 38 1 6.2932 -1.9640 5.4100 39 1 6.4378 -0.4728 4.4492 40 1 7.7587 -3.0647 2.2460 41 1 8.1825 -1.6517 3.2421 42 1 7.8308 -2.9946 5.2968 43 1 7.4070 -4.4076 4.3006 44 1 9.1008 -5.5712 3.0115 45 1 11.4890 -6.1276 2.7862 46 1 13.1897 -4.7154 3.8708 47 1 12.5029 -2.7415 5.1728 48 1 10.1154 -2.1799 5.3902 49 1 0.7888 -2.1448 -2.0753 50 1 2.4999 -2.6048 -1.9057 51 1 1.4407 -2.5738 -0.4755 52 1 4.8065 -0.7669 -4.5133 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506001449.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:53:16 Heat of formation + Delta-G solvation = 6.228734 kcal Electronic energy + Delta-G solvation = -28879.158116 eV Core-core repulsion = 25071.952148 eV Total energy + Delta-G solvation = -3807.205968 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.05 seconds Orbital eigenvalues (eV) -40.94019 -40.20765 -38.80548 -37.86945 -35.32650 -34.10081 -33.92170 -31.94934 -31.76634 -30.14402 -29.01238 -28.04866 -27.13590 -25.74247 -24.96836 -23.45589 -22.86448 -21.53976 -21.36875 -20.81099 -18.93325 -18.04197 -17.78691 -17.47604 -17.17862 -16.99750 -16.51961 -16.28895 -15.95806 -15.65853 -15.45766 -15.32934 -14.84663 -14.47840 -14.34825 -14.31685 -14.08445 -14.06779 -13.85313 -13.76212 -13.64258 -13.62461 -13.34525 -12.91247 -12.72354 -12.63512 -12.52474 -12.43016 -12.23154 -12.08994 -12.02358 -11.86486 -11.67777 -11.64176 -11.41392 -10.77016 -10.56955 -9.88322 -9.82098 -9.61743 -9.34367 -8.86505 -8.18700 -5.46728 0.43501 0.50128 1.35648 1.44375 1.55683 1.68747 2.19223 2.46011 2.84166 3.00240 3.04735 3.38232 3.81018 3.88105 3.96899 4.04556 4.05012 4.17153 4.18337 4.28751 4.30498 4.31811 4.35299 4.51211 4.53072 4.55742 4.57228 4.63737 4.66102 4.68195 4.74807 4.81077 4.88447 4.93283 5.00337 5.03116 5.04984 5.10284 5.18807 5.24515 5.28893 5.42722 5.57820 5.62435 5.63126 5.72856 5.85249 5.93138 6.04345 6.13689 6.19965 6.66711 6.96370 7.32182 7.66381 8.07764 9.00769 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.014105 B = 0.002693 C = 0.002378 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1984.578184 B =10394.415642 C =11772.714311 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C 0.157 3.843 3 H 0.073 0.927 4 C 0.113 3.887 5 N -0.714 5.714 6 C 0.511 3.489 7 O -0.565 6.565 8 C 0.034 3.966 9 N -0.538 5.538 10 C 0.021 3.979 11 C 0.064 3.936 12 C -0.068 4.068 13 C -0.091 4.091 14 C -0.131 4.131 15 C -0.129 4.129 16 C -0.133 4.133 17 C -0.127 4.127 18 C -0.127 4.127 19 N -0.608 5.608 20 C 0.114 3.886 21 C -0.254 4.254 22 H 0.049 0.951 23 C -0.016 4.016 24 N -0.942 5.942 25 Si 0.934 3.066 26 H -0.298 1.298 27 H -0.317 1.317 28 H -0.232 1.232 29 H 0.078 0.922 30 H 0.048 0.952 31 H 0.053 0.947 32 H 0.074 0.926 33 H 0.053 0.947 34 H 0.408 0.592 35 H 0.100 0.900 36 H 0.079 0.921 37 H 0.066 0.934 38 H 0.083 0.917 39 H 0.030 0.970 40 H 0.070 0.930 41 H 0.043 0.957 42 H 0.081 0.919 43 H 0.074 0.926 44 H 0.124 0.876 45 H 0.136 0.864 46 H 0.140 0.860 47 H 0.140 0.860 48 H 0.132 0.868 49 H 0.018 0.982 50 H 0.020 0.980 51 H 0.058 0.942 52 H 0.260 0.740 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.078 -5.169 18.950 22.551 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.050 3.950 3 H 0.091 0.909 4 C -0.013 4.013 5 N -0.366 5.366 6 C 0.297 3.703 7 O -0.445 6.445 8 C -0.097 4.097 9 N -0.262 5.262 10 C -0.126 4.126 11 C -0.063 4.063 12 C -0.105 4.105 13 C -0.091 4.091 14 C -0.149 4.149 15 C -0.147 4.147 16 C -0.151 4.151 17 C -0.145 4.145 18 C -0.145 4.145 19 N -0.333 5.333 20 C -0.030 4.030 21 C -0.384 4.384 22 H 0.067 0.933 23 C -0.213 4.213 24 N -0.586 5.586 25 Si 0.764 3.236 26 H -0.227 1.227 27 H -0.246 1.246 28 H -0.155 1.155 29 H 0.097 0.903 30 H 0.068 0.932 31 H 0.072 0.928 32 H 0.092 0.908 33 H 0.071 0.929 34 H 0.244 0.756 35 H 0.118 0.882 36 H 0.097 0.903 37 H 0.085 0.915 38 H 0.101 0.899 39 H 0.049 0.951 40 H 0.089 0.911 41 H 0.061 0.939 42 H 0.100 0.900 43 H 0.093 0.907 44 H 0.142 0.858 45 H 0.153 0.847 46 H 0.157 0.843 47 H 0.158 0.842 48 H 0.150 0.850 49 H 0.036 0.964 50 H 0.039 0.961 51 H 0.076 0.924 52 H 0.069 0.931 Dipole moment (debyes) X Y Z Total from point charges 10.450 -5.920 19.546 22.941 hybrid contribution 1.064 0.130 -1.043 1.495 sum 11.513 -5.791 18.503 22.549 Atomic orbital electron populations 1.22043 0.94709 1.01990 1.01999 1.20908 0.94391 0.95773 0.83898 0.90866 1.21856 0.79716 1.00686 0.99042 1.46155 1.08515 1.58668 1.23249 1.20725 0.90387 0.77197 0.81986 1.90595 1.70765 1.48783 1.34341 1.22018 0.91884 1.00194 0.95559 1.61615 1.17540 1.45155 1.01911 1.22546 1.02511 0.95244 0.92325 1.22122 0.86104 0.98536 0.99528 1.20498 0.91240 1.00144 0.98651 1.19956 0.95456 0.95670 0.98059 1.21304 0.96836 0.97495 0.99306 1.21439 0.92972 1.00433 0.99845 1.21474 1.00465 0.95444 0.97733 1.21456 0.96238 0.97670 0.99088 1.21294 0.93158 0.99851 1.00193 1.44164 1.57961 1.09102 1.22051 1.21265 0.97497 0.85400 0.98883 1.18660 1.11058 0.94055 1.14595 0.93327 1.25863 0.98591 1.00875 0.95996 1.70075 1.33536 1.44041 1.10935 0.86163 0.75778 0.79908 0.81716 1.22741 1.24638 1.15533 0.90325 0.93237 0.92760 0.90752 0.92909 0.75588 0.88166 0.90307 0.91514 0.89856 0.95129 0.91144 0.93888 0.90017 0.90736 0.85757 0.84652 0.84262 0.84203 0.85027 0.96366 0.96148 0.92385 0.93059 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.20 9.19 71.98 0.66 -3.54 16 2 C 0.16 5.30 2.87 44.99 0.13 5.43 16 3 H 0.07 2.54 7.89 -2.39 -0.02 2.52 16 4 C 0.11 3.59 4.93 86.38 0.43 4.02 16 5 N -0.71 -24.14 4.57 -463.04 -2.12 -26.26 16 6 C 0.51 17.15 7.55 87.66 0.66 17.81 16 7 O -0.57 -21.60 14.31 -3.04 -0.04 -21.64 16 8 C 0.03 0.97 5.45 85.56 0.47 1.44 16 9 N -0.54 -14.06 4.50 -927.05 -4.17 -18.23 16 10 C 0.02 0.50 9.02 127.69 1.15 1.65 16 11 C 0.06 1.39 4.94 86.30 0.43 1.81 16 12 C -0.07 -1.28 5.28 29.85 0.16 -1.12 16 13 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 14 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 15 C -0.13 -2.14 10.05 22.27 0.22 -1.91 16 16 C -0.13 -2.01 10.05 22.27 0.22 -1.78 16 17 C -0.13 -1.91 10.05 22.27 0.22 -1.69 16 18 C -0.13 -2.13 9.70 22.27 0.22 -1.91 16 19 N -0.61 -25.59 1.92 -702.76 -1.35 -26.94 16 20 C 0.11 4.62 8.78 127.77 1.12 5.74 16 21 C -0.25 -13.05 9.57 84.03 0.80 -12.24 16 22 H 0.05 2.76 8.06 -2.91 -0.02 2.74 16 23 C -0.02 -0.88 5.25 84.86 0.45 -0.43 16 24 N -0.94 -56.10 13.97 21.65 0.30 -55.80 16 25 Si 0.93 42.78 24.83 68.60 1.70 44.48 16 26 H -0.30 -14.07 6.60 99.48 0.66 -13.41 16 27 H -0.32 -15.04 7.11 99.48 0.71 -14.34 16 28 H -0.23 -9.38 5.29 99.48 0.53 -8.85 16 29 H 0.08 1.77 8.14 -2.38 -0.02 1.75 16 30 H 0.05 1.51 8.14 -2.39 -0.02 1.49 16 31 H 0.05 1.50 7.67 -2.39 -0.02 1.48 16 32 H 0.07 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.05 1.77 6.87 -2.38 -0.02 1.75 16 34 H 0.41 14.59 6.67 -92.71 -0.62 13.97 16 35 H 0.10 2.87 7.81 -2.39 -0.02 2.85 16 36 H 0.08 1.94 8.12 -2.39 -0.02 1.93 16 37 H 0.07 1.92 5.88 -2.39 -0.01 1.90 16 38 H 0.08 1.66 6.30 -2.39 -0.02 1.64 16 39 H 0.03 0.64 8.14 -2.39 -0.02 0.62 16 40 H 0.07 1.59 7.93 -2.39 -0.02 1.57 16 41 H 0.04 0.87 8.12 -2.39 -0.02 0.85 16 42 H 0.08 1.39 6.42 -2.38 -0.02 1.37 16 43 H 0.07 1.52 8.08 -2.39 -0.02 1.50 16 44 H 0.12 2.17 8.06 -2.91 -0.02 2.14 16 45 H 0.14 1.72 8.06 -2.91 -0.02 1.70 16 46 H 0.14 1.45 8.06 -2.91 -0.02 1.42 16 47 H 0.14 1.46 8.06 -2.91 -0.02 1.44 16 48 H 0.13 1.79 8.06 -2.91 -0.02 1.77 16 49 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 50 H 0.02 0.91 2.81 -2.39 -0.01 0.90 16 51 H 0.06 2.06 6.53 -2.39 -0.02 2.05 16 52 H 0.26 14.88 8.31 -92.71 -0.77 14.11 16 Total: -1.00 -65.25 405.08 1.82 -63.43 By element: Atomic # 1 Polarization: 31.69 SS G_CDS: 0.05 Total: 31.74 kcal Atomic # 6 Polarization: 1.77 SS G_CDS: 7.45 Total: 9.23 kcal Atomic # 7 Polarization: -119.89 SS G_CDS: -7.34 Total: -127.23 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.04 Total: -21.64 kcal Atomic # 14 Polarization: 42.78 SS G_CDS: 1.70 Total: 44.48 kcal Total: -65.25 1.82 -63.43 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506001449.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.654 kcal (2) G-P(sol) polarization free energy of solvation -65.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 4.406 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.823 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.425 kcal (6) G-S(sol) free energy of system = (1) + (5) 6.229 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.05 seconds