Wall clock time and date at job start Tue Mar 31 2020 17:28:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47012 * 239.99512 * 2 1 3 5 5 C 1.50704 * 109.47143 * 65.00341 * 4 2 1 6 6 O 1.21277 * 119.99897 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00079 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99867 * 175.32259 * 7 5 4 9 9 C 1.53002 * 109.47397 * 62.20001 * 8 7 5 10 10 N 1.46497 * 109.46933 * 58.34278 * 9 8 7 11 11 C 1.36942 * 119.99765 * 174.86885 * 10 9 8 12 12 H 1.07998 * 119.99699 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00043 * 180.02562 * 11 10 9 14 14 N 1.31620 * 120.00308 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00147 * 179.72586 * 13 11 10 16 16 H 1.48489 * 109.46935 * 89.99936 * 15 13 11 17 17 H 1.48494 * 109.46845 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.46845 * 329.99753 * 15 13 11 19 19 C 1.53002 * 109.46739 * 182.20078 * 8 7 5 20 20 C 1.53003 * 109.47545 * 60.00051 * 19 8 7 21 21 C 1.52997 * 109.47064 * 59.99373 * 20 19 8 22 22 C 1.52998 * 109.47519 * 300.00324 * 21 20 19 23 23 C 1.52998 * 109.46964 * 302.19544 * 8 7 5 24 24 N 1.46497 * 109.46681 * 119.99828 * 2 1 3 25 25 C 1.36344 * 125.63744 * 59.69386 * 24 2 1 26 26 C 1.34857 * 108.21684 * 179.82888 * 25 24 2 27 27 C 1.40895 * 107.41703 * 0.42666 * 26 25 24 28 28 C 1.34848 * 107.41340 * 359.73444 * 27 26 25 29 29 H 1.08994 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47325 * 300.00421 * 1 2 3 31 31 H 1.09011 * 109.46830 * 60.00233 * 1 2 3 32 32 H 1.08995 * 109.47529 * 305.00532 * 4 2 1 33 33 H 1.08997 * 109.46806 * 185.00020 * 4 2 1 34 34 H 0.96997 * 120.00026 * 355.32134 * 7 5 4 35 35 H 1.08997 * 109.47007 * 298.34278 * 9 8 7 36 36 H 1.08996 * 109.46911 * 178.34376 * 9 8 7 37 37 H 0.96999 * 120.00287 * 354.87524 * 10 9 8 38 38 H 0.96995 * 120.00296 * 180.02562 * 14 13 11 39 39 H 1.09006 * 109.46741 * 179.97438 * 19 8 7 40 40 H 1.08993 * 109.47275 * 299.99130 * 19 8 7 41 41 H 1.09000 * 109.46573 * 299.99838 * 20 19 8 42 42 H 1.08992 * 109.47034 * 179.97438 * 20 19 8 43 43 H 1.08997 * 109.47205 * 180.02562 * 21 20 19 44 44 H 1.09000 * 109.47046 * 60.00755 * 21 20 19 45 45 H 1.09000 * 109.47314 * 300.00267 * 22 21 20 46 46 H 1.09004 * 109.47155 * 179.97438 * 22 21 20 47 47 H 1.09004 * 109.46795 * 60.00400 * 23 8 7 48 48 H 1.09006 * 109.47017 * 180.02562 * 23 8 7 49 49 H 1.08001 * 125.89233 * 359.96087 * 25 24 2 50 50 H 1.08001 * 126.29171 * 180.16268 * 26 25 24 51 51 H 1.07999 * 126.28852 * 179.73832 * 27 26 25 52 52 H 1.08009 * 125.88843 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3634 7 7 1.9854 -0.3916 -3.7001 8 6 1.5114 0.3081 -4.8967 9 6 2.0618 1.7357 -4.9044 10 7 3.5258 1.6948 -4.8708 11 6 4.2457 2.8548 -4.9771 12 1 3.7342 3.7998 -5.0852 13 6 5.6329 2.8160 -4.9458 14 7 6.2563 1.6643 -4.8146 15 14 6.6152 4.3976 -5.0984 16 1 6.8483 4.9678 -3.7473 17 1 7.9201 4.1093 -5.7459 18 1 5.8580 5.3729 -5.9234 19 6 1.9954 -0.4319 -6.1454 20 6 1.4450 -1.8594 -6.1378 21 6 -0.0844 -1.8164 -6.1311 22 6 -0.5684 -1.0765 -4.8824 23 6 -0.0180 0.3511 -4.8901 24 7 2.0183 -0.6906 1.1962 25 6 1.7558 -1.9867 1.5279 26 6 2.3798 -2.2586 2.6921 27 6 3.0440 -1.0844 3.0988 28 6 2.8053 -0.1416 2.1647 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 2.5468 -1.1777 -3.7884 35 1 1.6931 2.2719 -4.0300 36 1 1.7332 2.2468 -5.8093 37 1 3.9852 0.8460 -4.7735 38 1 7.2256 1.6372 -4.7923 39 1 1.6423 0.0885 -7.0357 40 1 3.0848 -0.4625 -6.1502 41 1 1.7977 -2.3800 -5.2474 42 1 1.7894 -2.3863 -7.0275 43 1 -0.4765 -2.8333 -6.1252 44 1 -0.4371 -1.2958 -7.0214 45 1 -0.2157 -1.5970 -3.9920 46 1 -1.6580 -1.0454 -4.8779 47 1 -0.3628 0.8782 -4.0005 48 1 -0.3707 0.8713 -5.7807 49 1 1.1539 -2.6773 0.9559 50 1 2.3686 -3.2016 3.2184 51 1 3.6355 -0.9621 3.9941 52 1 3.1738 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506522075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:06 Heat of formation + Delta-G solvation = 11.115519 kcal Electronic energy + Delta-G solvation = -30410.340325 eV Core-core repulsion = 26603.346264 eV Total energy + Delta-G solvation = -3806.994061 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.88 seconds Orbital eigenvalues (eV) -41.24415 -40.37357 -38.01911 -35.03102 -34.56036 -33.28549 -31.44019 -30.70661 -29.85999 -29.24226 -28.67207 -27.65411 -25.29339 -23.10362 -23.01105 -22.26644 -20.96349 -20.47529 -20.26520 -19.34941 -18.88319 -17.55671 -17.19225 -16.62738 -15.51270 -15.43979 -15.09159 -14.66074 -14.51790 -14.35706 -13.98767 -13.75898 -13.59187 -13.39625 -13.23850 -13.03501 -12.97618 -12.63915 -12.26639 -12.23451 -12.15773 -12.14430 -12.02859 -11.81379 -11.59799 -11.41205 -11.33700 -11.14661 -10.97867 -10.86471 -10.80265 -10.56335 -10.19138 -10.09090 -9.93003 -9.66225 -9.30349 -8.78649 -8.57177 -8.54659 -8.09708 -6.85228 -5.75526 -3.01609 2.34715 2.86943 2.92371 3.11919 3.44161 3.49759 3.50789 3.57231 4.47662 4.60417 4.75229 4.79261 4.86427 4.90412 4.96825 5.05718 5.20010 5.28750 5.30844 5.31887 5.36633 5.45773 5.56409 5.60370 5.61151 5.63038 5.66441 5.69372 5.75474 5.80467 5.84945 5.88641 6.08346 6.11556 6.14466 6.21143 6.28895 6.31554 6.33064 6.37955 6.40013 6.48203 6.55824 6.65980 6.90176 7.05834 7.11839 7.31948 7.45649 7.72680 7.84710 8.44343 8.54333 9.55776 10.14115 10.49556 11.47709 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.004342 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.224123 B = 6446.600379 C = 9017.571935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.163 4.163 2 C 0.149 3.851 3 H 0.108 0.892 4 C -0.153 4.153 5 C 0.528 3.472 6 O -0.532 6.532 7 N -0.706 5.706 8 C 0.178 3.822 9 C 0.140 3.860 10 N -0.726 5.726 11 C -0.231 4.231 12 H 0.068 0.932 13 C -0.015 4.015 14 N -0.937 5.937 15 Si 0.904 3.096 16 H -0.291 1.291 17 H -0.292 1.292 18 H -0.283 1.283 19 C -0.119 4.119 20 C -0.119 4.119 21 C -0.118 4.118 22 C -0.112 4.112 23 C -0.128 4.128 24 N -0.440 5.440 25 C -0.016 4.016 26 C -0.207 4.207 27 C -0.208 4.208 28 C -0.011 4.011 29 H 0.054 0.946 30 H 0.059 0.941 31 H 0.097 0.903 32 H 0.094 0.906 33 H 0.101 0.899 34 H 0.396 0.604 35 H 0.044 0.956 36 H 0.023 0.977 37 H 0.381 0.619 38 H 0.253 0.747 39 H 0.075 0.925 40 H 0.081 0.919 41 H 0.058 0.942 42 H 0.061 0.939 43 H 0.055 0.945 44 H 0.060 0.940 45 H 0.057 0.943 46 H 0.055 0.945 47 H 0.083 0.917 48 H 0.067 0.933 49 H 0.155 0.845 50 H 0.130 0.870 51 H 0.131 0.869 52 H 0.159 0.841 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.447 -11.265 6.098 18.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.220 4.220 2 C 0.047 3.953 3 H 0.126 0.874 4 C -0.194 4.194 5 C 0.313 3.687 6 O -0.410 6.410 7 N -0.356 5.356 8 C 0.093 3.907 9 C 0.012 3.988 10 N -0.370 5.370 11 C -0.362 4.362 12 H 0.086 0.914 13 C -0.210 4.210 14 N -0.586 5.586 15 Si 0.736 3.264 16 H -0.219 1.219 17 H -0.219 1.219 18 H -0.208 1.208 19 C -0.157 4.157 20 C -0.157 4.157 21 C -0.156 4.156 22 C -0.150 4.150 23 C -0.167 4.167 24 N -0.115 5.115 25 C -0.146 4.146 26 C -0.231 4.231 27 C -0.232 4.232 28 C -0.141 4.141 29 H 0.073 0.927 30 H 0.078 0.922 31 H 0.115 0.885 32 H 0.112 0.888 33 H 0.119 0.881 34 H 0.231 0.769 35 H 0.061 0.939 36 H 0.041 0.959 37 H 0.215 0.785 38 H 0.063 0.937 39 H 0.093 0.907 40 H 0.099 0.901 41 H 0.077 0.923 42 H 0.080 0.920 43 H 0.074 0.926 44 H 0.079 0.921 45 H 0.076 0.924 46 H 0.074 0.926 47 H 0.102 0.898 48 H 0.086 0.914 49 H 0.172 0.828 50 H 0.148 0.852 51 H 0.149 0.851 52 H 0.176 0.824 Dipole moment (debyes) X Y Z Total from point charges -14.003 -10.164 5.812 18.252 hybrid contribution 1.296 0.146 -0.088 1.307 sum -12.707 -10.018 5.723 17.164 Atomic orbital electron populations 1.22266 0.92968 1.02428 1.04384 1.21106 0.95763 0.96936 0.81482 0.87402 1.21997 1.04127 1.00340 0.92886 1.19955 0.79331 0.85199 0.84172 1.90617 1.40643 1.23392 1.86329 1.45904 1.52708 1.31796 1.05237 1.20572 0.93075 0.93373 0.83729 1.21117 0.86297 0.92254 0.99126 1.42224 0.99151 1.07079 1.88553 1.19232 0.88747 0.87097 1.41162 0.91408 1.24665 0.96374 0.96669 1.03338 1.69637 1.07707 1.23220 1.58053 0.86222 0.79684 0.82958 0.77563 1.21865 1.21853 1.20838 1.21775 1.02215 0.94720 0.97005 1.21555 0.95378 0.97207 1.01520 1.21545 0.95945 0.99728 0.98363 1.21452 0.99444 0.96185 0.97917 1.21890 0.94530 0.96810 1.03436 1.44394 1.38848 1.10237 1.18044 1.21681 1.06777 0.86436 0.99684 1.20843 1.04891 0.99207 0.98180 1.20849 1.07097 0.93972 1.01306 1.21904 1.00968 0.99891 0.91321 0.92669 0.92233 0.88476 0.88782 0.88097 0.76923 0.93875 0.95941 0.78498 0.93692 0.90651 0.90053 0.92331 0.92034 0.92625 0.92117 0.92384 0.92598 0.89808 0.91449 0.82771 0.85174 0.85081 0.82375 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.82 8.97 37.16 0.33 -1.48 16 2 C 0.15 1.82 2.67 -67.93 -0.18 1.64 16 3 H 0.11 1.50 7.88 -51.93 -0.41 1.09 16 4 C -0.15 -1.82 5.17 -27.88 -0.14 -1.97 16 5 C 0.53 7.72 6.95 -10.98 -0.08 7.65 16 6 O -0.53 -9.18 10.21 5.56 0.06 -9.13 16 7 N -0.71 -9.93 3.54 -47.61 -0.17 -10.10 16 8 C 0.18 2.71 0.32 -131.82 -0.04 2.67 16 9 C 0.14 2.86 4.97 -4.04 -0.02 2.84 16 10 N -0.73 -17.88 5.12 -59.91 -0.31 -18.18 16 11 C -0.23 -6.49 9.99 -15.06 -0.15 -6.64 16 12 H 0.07 1.89 7.83 -52.49 -0.41 1.48 16 13 C -0.02 -0.43 5.50 -17.43 -0.10 -0.53 16 14 N -0.94 -27.91 13.06 55.49 0.72 -27.18 16 15 Si 0.90 22.67 29.55 -169.99 -5.02 17.64 16 16 H -0.29 -7.32 7.11 56.52 0.40 -6.92 16 17 H -0.29 -7.35 7.11 56.52 0.40 -6.95 16 18 H -0.28 -6.92 7.11 56.52 0.40 -6.52 16 19 C -0.12 -1.69 4.62 -26.73 -0.12 -1.81 16 20 C -0.12 -1.31 5.75 -26.73 -0.15 -1.46 16 21 C -0.12 -1.19 5.92 -26.73 -0.16 -1.35 16 22 C -0.11 -1.23 5.77 -26.73 -0.15 -1.38 16 23 C -0.13 -1.71 4.49 -26.73 -0.12 -1.83 16 24 N -0.44 -5.42 2.62 -110.02 -0.29 -5.70 16 25 C -0.02 -0.18 10.45 -16.75 -0.18 -0.36 16 26 C -0.21 -2.46 10.86 -39.78 -0.43 -2.89 16 27 C -0.21 -2.57 10.86 -39.78 -0.43 -3.00 16 28 C -0.01 -0.13 11.39 -16.75 -0.19 -0.33 16 29 H 0.05 0.54 7.91 -51.93 -0.41 0.13 16 30 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 31 H 0.10 1.22 5.95 -51.92 -0.31 0.91 16 32 H 0.09 0.90 8.06 -51.93 -0.42 0.48 16 33 H 0.10 1.30 8.14 -51.93 -0.42 0.88 16 34 H 0.40 4.98 7.40 -40.82 -0.30 4.68 16 35 H 0.04 0.98 6.22 -51.93 -0.32 0.66 16 36 H 0.02 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.38 9.63 6.51 -40.82 -0.27 9.36 16 38 H 0.25 7.36 8.31 -40.82 -0.34 7.02 16 39 H 0.07 1.08 8.14 -51.93 -0.42 0.66 16 40 H 0.08 1.37 7.07 -51.93 -0.37 1.00 16 41 H 0.06 0.61 6.91 -51.93 -0.36 0.25 16 42 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 43 H 0.05 0.50 8.14 -51.93 -0.42 0.07 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.06 0.64 7.60 -51.93 -0.39 0.24 16 46 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 47 H 0.08 1.26 6.17 -51.93 -0.32 0.94 16 48 H 0.07 0.88 8.14 -51.93 -0.42 0.46 16 49 H 0.15 1.41 8.06 -52.49 -0.42 0.99 16 50 H 0.13 1.31 8.06 -52.49 -0.42 0.88 16 51 H 0.13 1.41 8.06 -52.49 -0.42 0.98 16 52 H 0.16 1.78 8.06 -52.48 -0.42 1.36 16 LS Contribution 399.40 15.07 6.02 6.02 Total: -1.00 -31.68 399.40 -10.22 -41.91 By element: Atomic # 1 Polarization: 23.89 SS G_CDS: -8.92 Total: 14.97 kcal Atomic # 6 Polarization: -7.92 SS G_CDS: -2.32 Total: -10.24 kcal Atomic # 7 Polarization: -61.14 SS G_CDS: -0.04 Total: -61.17 kcal Atomic # 8 Polarization: -9.18 SS G_CDS: 0.06 Total: -9.13 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.64 kcal Total LS contribution 6.02 Total: 6.02 kcal Total: -31.68 -10.22 -41.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506522075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.024 kcal (2) G-P(sol) polarization free energy of solvation -31.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.340 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.225 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.909 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.116 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.88 seconds