Wall clock time and date at job start Tue Mar 31 2020 17:28:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08994 * 109.47227 * 2 1 4 4 C 1.52998 * 109.47012 * 239.99512 * 2 1 3 5 5 C 1.50704 * 109.47143 * 65.00341 * 4 2 1 6 6 O 1.21277 * 119.99897 * 359.97438 * 5 4 2 7 7 N 1.34776 * 120.00079 * 179.97438 * 5 4 2 8 8 C 1.46496 * 119.99867 * 175.32259 * 7 5 4 9 9 C 1.53002 * 109.47397 * 62.20001 * 8 7 5 10 10 N 1.46497 * 109.46933 * 58.34278 * 9 8 7 11 11 C 1.36942 * 119.99765 * 174.86885 * 10 9 8 12 12 H 1.07998 * 119.99699 * 0.02562 * 11 10 9 13 13 C 1.38804 * 120.00043 * 180.02562 * 11 10 9 14 14 N 1.31620 * 120.00308 * 0.02562 * 13 11 10 15 15 Si 1.86807 * 120.00147 * 179.72586 * 13 11 10 16 16 H 1.48489 * 109.46935 * 89.99936 * 15 13 11 17 17 H 1.48494 * 109.46845 * 209.99972 * 15 13 11 18 18 H 1.48503 * 109.46845 * 329.99753 * 15 13 11 19 19 C 1.53002 * 109.46739 * 182.20078 * 8 7 5 20 20 C 1.53003 * 109.47545 * 60.00051 * 19 8 7 21 21 C 1.52997 * 109.47064 * 59.99373 * 20 19 8 22 22 C 1.52998 * 109.47519 * 300.00324 * 21 20 19 23 23 C 1.52998 * 109.46964 * 302.19544 * 8 7 5 24 24 N 1.46497 * 109.46681 * 119.99828 * 2 1 3 25 25 C 1.36344 * 125.63744 * 59.69386 * 24 2 1 26 26 C 1.34857 * 108.21684 * 179.82888 * 25 24 2 27 27 C 1.40895 * 107.41703 * 0.42666 * 26 25 24 28 28 C 1.34848 * 107.41340 * 359.73444 * 27 26 25 29 29 H 1.08994 * 109.47227 * 179.97438 * 1 2 3 30 30 H 1.08991 * 109.47325 * 300.00421 * 1 2 3 31 31 H 1.09011 * 109.46830 * 60.00233 * 1 2 3 32 32 H 1.08995 * 109.47529 * 305.00532 * 4 2 1 33 33 H 1.08997 * 109.46806 * 185.00020 * 4 2 1 34 34 H 0.96997 * 120.00026 * 355.32134 * 7 5 4 35 35 H 1.08997 * 109.47007 * 298.34278 * 9 8 7 36 36 H 1.08996 * 109.46911 * 178.34376 * 9 8 7 37 37 H 0.96999 * 120.00287 * 354.87524 * 10 9 8 38 38 H 0.96995 * 120.00296 * 180.02562 * 14 13 11 39 39 H 1.09006 * 109.46741 * 179.97438 * 19 8 7 40 40 H 1.08993 * 109.47275 * 299.99130 * 19 8 7 41 41 H 1.09000 * 109.46573 * 299.99838 * 20 19 8 42 42 H 1.08992 * 109.47034 * 179.97438 * 20 19 8 43 43 H 1.08997 * 109.47205 * 180.02562 * 21 20 19 44 44 H 1.09000 * 109.47046 * 60.00755 * 21 20 19 45 45 H 1.09000 * 109.47314 * 300.00267 * 22 21 20 46 46 H 1.09004 * 109.47155 * 179.97438 * 22 21 20 47 47 H 1.09004 * 109.46795 * 60.00400 * 23 8 7 48 48 H 1.09006 * 109.47017 * 180.02562 * 23 8 7 49 49 H 1.08001 * 125.89233 * 359.96087 * 25 24 2 50 50 H 1.08001 * 126.29171 * 180.16268 * 26 25 24 51 51 H 1.07999 * 126.28852 * 179.73832 * 27 26 25 52 52 H 1.08009 * 125.88843 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.6414 0.0569 -2.4766 6 8 1.0110 1.0868 -2.3634 7 7 1.9854 -0.3916 -3.7001 8 6 1.5114 0.3081 -4.8967 9 6 2.0618 1.7357 -4.9044 10 7 3.5258 1.6948 -4.8708 11 6 4.2457 2.8548 -4.9771 12 1 3.7342 3.7998 -5.0852 13 6 5.6329 2.8160 -4.9458 14 7 6.2563 1.6643 -4.8146 15 14 6.6152 4.3976 -5.0984 16 1 6.8483 4.9678 -3.7473 17 1 7.9201 4.1093 -5.7459 18 1 5.8580 5.3729 -5.9234 19 6 1.9954 -0.4319 -6.1454 20 6 1.4450 -1.8594 -6.1378 21 6 -0.0844 -1.8164 -6.1311 22 6 -0.5684 -1.0765 -4.8824 23 6 -0.0180 0.3511 -4.8901 24 7 2.0183 -0.6906 1.1962 25 6 1.7558 -1.9867 1.5279 26 6 2.3798 -2.2586 2.6921 27 6 3.0440 -1.0844 3.0988 28 6 2.8053 -0.1416 2.1647 29 1 -0.3633 -1.0276 -0.0005 30 1 -0.3633 0.5138 0.8899 31 1 -0.3633 0.5139 -0.8901 32 1 1.6054 -1.7198 -1.2951 33 1 3.1263 -0.7995 -1.2055 34 1 2.5468 -1.1777 -3.7884 35 1 1.6931 2.2719 -4.0300 36 1 1.7332 2.2468 -5.8093 37 1 3.9852 0.8460 -4.7735 38 1 7.2256 1.6372 -4.7923 39 1 1.6423 0.0885 -7.0357 40 1 3.0848 -0.4625 -6.1502 41 1 1.7977 -2.3800 -5.2474 42 1 1.7894 -2.3863 -7.0275 43 1 -0.4765 -2.8333 -6.1252 44 1 -0.4371 -1.2958 -7.0214 45 1 -0.2157 -1.5970 -3.9920 46 1 -1.6580 -1.0454 -4.8779 47 1 -0.3628 0.8782 -4.0005 48 1 -0.3707 0.8713 -5.7807 49 1 1.1539 -2.6773 0.9559 50 1 2.3686 -3.2016 3.2184 51 1 3.6355 -0.9621 3.9941 52 1 3.1738 0.8735 2.1811 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506522075.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:28:05 Heat of formation + Delta-G solvation = -5.873481 kcal Electronic energy + Delta-G solvation = -30411.077023 eV Core-core repulsion = 26603.346264 eV Total energy + Delta-G solvation = -3807.730760 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.99 seconds Orbital eigenvalues (eV) -42.20492 -41.53444 -39.15371 -36.42517 -35.89325 -34.65540 -33.18461 -31.73711 -31.17615 -30.39254 -29.58852 -28.66405 -27.02703 -24.70958 -24.07658 -23.41718 -22.14624 -21.52643 -21.25746 -20.28325 -20.05736 -19.24400 -18.56679 -17.68928 -16.85862 -16.63308 -16.42344 -16.13348 -15.61392 -15.51626 -15.19095 -15.08233 -14.75729 -14.67592 -14.59098 -14.29679 -14.09210 -13.72844 -13.56878 -13.41058 -13.18299 -13.11733 -13.01763 -12.92410 -12.86717 -12.81113 -12.64920 -12.62277 -12.33110 -12.12569 -12.09873 -11.96050 -11.88032 -11.44424 -11.11550 -11.06913 -11.00636 -10.39297 -9.82562 -9.49719 -9.02036 -8.94062 -7.96932 -5.22427 1.41547 1.43161 1.44223 1.52480 1.74776 1.87873 2.19914 2.46409 2.54430 3.36549 3.48927 3.66071 3.78758 3.82456 3.90095 3.95582 4.12100 4.14775 4.24157 4.27387 4.42164 4.45884 4.48243 4.52165 4.56088 4.62404 4.64381 4.70032 4.77223 4.81339 4.87218 4.88647 4.91068 4.96662 5.14662 5.17848 5.21969 5.24272 5.27255 5.34365 5.40596 5.43985 5.45347 5.48204 5.51063 5.55281 5.78452 6.15128 6.26152 6.39089 6.54478 6.69060 7.33632 7.38739 8.09536 8.37017 9.26003 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.007943 B = 0.004342 C = 0.003104 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3524.224123 B = 6446.600379 C = 9017.571935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.153 4.153 2 C 0.154 3.846 3 H 0.081 0.919 4 C -0.141 4.141 5 C 0.523 3.477 6 O -0.561 6.561 7 N -0.701 5.701 8 C 0.187 3.813 9 C 0.141 3.859 10 N -0.729 5.729 11 C -0.243 4.243 12 H 0.063 0.937 13 C -0.067 4.067 14 N -0.963 5.963 15 Si 0.965 3.035 16 H -0.291 1.291 17 H -0.291 1.291 18 H -0.273 1.273 19 C -0.113 4.113 20 C -0.112 4.112 21 C -0.113 4.113 22 C -0.105 4.105 23 C -0.122 4.122 24 N -0.443 5.443 25 C -0.015 4.015 26 C -0.221 4.221 27 C -0.217 4.217 28 C -0.037 4.037 29 H 0.075 0.925 30 H 0.056 0.944 31 H 0.082 0.918 32 H 0.128 0.872 33 H 0.091 0.909 34 H 0.405 0.595 35 H 0.020 0.980 36 H 0.016 0.984 37 H 0.377 0.623 38 H 0.251 0.749 39 H 0.070 0.930 40 H 0.051 0.949 41 H 0.068 0.932 42 H 0.072 0.928 43 H 0.078 0.922 44 H 0.062 0.938 45 H 0.061 0.939 46 H 0.070 0.930 47 H 0.065 0.935 48 H 0.068 0.932 49 H 0.183 0.817 50 H 0.148 0.852 51 H 0.142 0.858 52 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.660 -13.320 5.976 20.690 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.051 3.949 3 H 0.100 0.900 4 C -0.181 4.181 5 C 0.310 3.690 6 O -0.441 6.441 7 N -0.352 5.352 8 C 0.101 3.899 9 C 0.013 3.987 10 N -0.372 5.372 11 C -0.375 4.375 12 H 0.081 0.919 13 C -0.260 4.260 14 N -0.614 5.614 15 Si 0.795 3.205 16 H -0.219 1.219 17 H -0.217 1.217 18 H -0.199 1.199 19 C -0.151 4.151 20 C -0.150 4.150 21 C -0.151 4.151 22 C -0.143 4.143 23 C -0.160 4.160 24 N -0.119 5.119 25 C -0.145 4.145 26 C -0.245 4.245 27 C -0.242 4.242 28 C -0.167 4.167 29 H 0.094 0.906 30 H 0.075 0.925 31 H 0.101 0.899 32 H 0.146 0.854 33 H 0.110 0.890 34 H 0.241 0.759 35 H 0.038 0.962 36 H 0.034 0.966 37 H 0.210 0.790 38 H 0.060 0.940 39 H 0.089 0.911 40 H 0.070 0.930 41 H 0.087 0.913 42 H 0.091 0.909 43 H 0.097 0.903 44 H 0.080 0.920 45 H 0.080 0.920 46 H 0.089 0.911 47 H 0.083 0.917 48 H 0.087 0.913 49 H 0.200 0.800 50 H 0.166 0.834 51 H 0.160 0.840 52 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -15.236 -12.229 5.689 20.348 hybrid contribution 1.654 0.845 -0.028 1.858 sum -13.582 -11.383 5.661 18.604 Atomic orbital electron populations 1.22149 0.91904 1.03464 1.03486 1.20972 0.96458 0.95720 0.81760 0.90038 1.21925 1.03589 1.01437 0.91191 1.20438 0.78715 0.84978 0.84918 1.90618 1.41958 1.24708 1.86766 1.45861 1.52659 1.31854 1.04851 1.20384 0.94276 0.90375 0.84877 1.21187 0.84081 0.95970 0.97461 1.42293 1.00751 1.05955 1.88207 1.19541 0.89432 0.88044 1.40489 0.91899 1.25378 0.97258 0.99583 1.03791 1.69767 1.07597 1.24886 1.59179 0.85263 0.78160 0.79732 0.77374 1.21858 1.21748 1.19858 1.21683 1.00333 0.97053 0.96055 1.21524 0.96229 0.94606 1.02603 1.21526 0.94817 1.00906 0.97832 1.21414 1.00205 0.94011 0.98648 1.21811 0.92722 0.98906 1.02594 1.44418 1.38934 1.10700 1.17824 1.22173 1.06417 0.86144 0.99745 1.21170 1.04961 0.99747 0.98664 1.21139 1.07145 0.94274 1.01594 1.22145 1.01982 1.00515 0.92075 0.90579 0.92477 0.89947 0.85410 0.89018 0.75854 0.96225 0.96648 0.78996 0.94047 0.91102 0.93034 0.91322 0.90922 0.90340 0.91955 0.92006 0.91144 0.91658 0.91346 0.80023 0.83421 0.84047 0.82165 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.24 8.97 71.98 0.65 -2.59 16 2 C 0.15 3.69 2.67 44.99 0.12 3.81 16 3 H 0.08 2.38 7.88 -2.39 -0.02 2.36 16 4 C -0.14 -3.21 5.17 29.85 0.15 -3.05 16 5 C 0.52 15.20 6.95 87.66 0.61 15.81 16 6 O -0.56 -19.85 10.21 -3.02 -0.03 -19.88 16 7 N -0.70 -19.41 3.54 -422.93 -1.50 -20.91 16 8 C 0.19 5.69 0.32 3.61 0.00 5.70 16 9 C 0.14 5.93 4.97 86.38 0.43 6.36 16 10 N -0.73 -36.98 5.12 -343.47 -1.76 -38.74 16 11 C -0.24 -13.95 9.99 84.03 0.84 -13.11 16 12 H 0.06 3.60 7.83 -2.91 -0.02 3.57 16 13 C -0.07 -3.91 5.50 84.86 0.47 -3.44 16 14 N -0.96 -58.20 13.06 21.65 0.28 -57.92 16 15 Si 0.97 47.09 29.55 68.60 2.03 49.12 16 16 H -0.29 -14.13 7.11 99.48 0.71 -13.43 16 17 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 18 H -0.27 -12.80 7.11 99.48 0.71 -12.09 16 19 C -0.11 -3.15 4.62 30.60 0.14 -3.01 16 20 C -0.11 -2.19 5.75 30.59 0.18 -2.01 16 21 C -0.11 -1.90 5.92 30.59 0.18 -1.72 16 22 C -0.11 -2.00 5.77 30.59 0.18 -1.82 16 23 C -0.12 -3.16 4.49 30.59 0.14 -3.02 16 24 N -0.44 -10.50 2.62 -502.00 -1.31 -11.82 16 25 C -0.02 -0.31 10.45 83.21 0.87 0.56 16 26 C -0.22 -4.85 10.86 22.14 0.24 -4.61 16 27 C -0.22 -5.21 10.86 22.14 0.24 -4.97 16 28 C -0.04 -0.95 11.39 83.21 0.95 0.00 16 29 H 0.08 1.28 7.91 -2.39 -0.02 1.26 16 30 H 0.06 1.23 8.14 -2.39 -0.02 1.21 16 31 H 0.08 2.04 5.95 -2.38 -0.01 2.03 16 32 H 0.13 2.04 8.06 -2.39 -0.02 2.02 16 33 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 34 H 0.41 9.75 7.40 -92.71 -0.69 9.06 16 35 H 0.02 0.94 6.22 -2.39 -0.01 0.92 16 36 H 0.02 0.67 8.14 -2.39 -0.02 0.65 16 37 H 0.38 19.58 6.51 -92.71 -0.60 18.98 16 38 H 0.25 14.73 8.31 -92.71 -0.77 13.96 16 39 H 0.07 2.01 8.14 -2.38 -0.02 1.99 16 40 H 0.05 1.75 7.07 -2.39 -0.02 1.73 16 41 H 0.07 1.22 6.91 -2.39 -0.02 1.20 16 42 H 0.07 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 44 H 0.06 1.06 8.14 -2.39 -0.02 1.04 16 45 H 0.06 1.15 7.60 -2.39 -0.02 1.13 16 46 H 0.07 1.18 8.14 -2.39 -0.02 1.16 16 47 H 0.06 1.97 6.17 -2.38 -0.01 1.96 16 48 H 0.07 1.74 8.14 -2.38 -0.02 1.72 16 49 H 0.18 2.62 8.06 -2.91 -0.02 2.59 16 50 H 0.15 2.62 8.06 -2.91 -0.02 2.59 16 51 H 0.14 2.95 8.06 -2.91 -0.02 2.92 16 52 H 0.16 3.78 8.06 -2.91 -0.02 3.76 16 Total: -1.00 -69.47 399.40 3.70 -65.77 By element: Atomic # 1 Polarization: 45.90 SS G_CDS: -0.38 Total: 45.52 kcal Atomic # 6 Polarization: -17.52 SS G_CDS: 6.38 Total: -11.14 kcal Atomic # 7 Polarization: -125.09 SS G_CDS: -4.29 Total: -129.38 kcal Atomic # 8 Polarization: -19.85 SS G_CDS: -0.03 Total: -19.88 kcal Atomic # 14 Polarization: 47.09 SS G_CDS: 2.03 Total: 49.12 kcal Total: -69.47 3.70 -65.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506522075.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.893 kcal (2) G-P(sol) polarization free energy of solvation -69.471 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -9.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.704 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -5.873 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.99 seconds