Wall clock time and date at job start Tue Mar 31 2020 17:17:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 C 1.52996 * 109.47081 * 120.00260 * 2 1 3 5 5 H 1.09004 * 109.46998 * 303.75360 * 4 2 1 6 6 C 1.50694 * 109.47224 * 63.75575 * 4 2 1 7 7 O 1.21279 * 120.00302 * 34.56950 * 6 4 2 8 8 N 1.34776 * 119.99960 * 214.29202 * 6 4 2 9 9 C 1.46503 * 120.00307 * 175.02407 * 8 6 4 10 10 H 1.09000 * 109.47138 * 34.99726 * 9 8 6 11 11 C 1.53003 * 109.46714 * 275.00124 * 9 8 6 12 12 C 1.52995 * 109.47485 * 155.00079 * 9 8 6 13 13 C 1.53003 * 109.46950 * 294.99852 * 12 9 8 14 14 C 1.53001 * 109.46910 * 179.97438 * 13 12 9 15 15 N 1.46503 * 109.47118 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00140 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99894 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99862 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99790 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47371 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47409 * 119.99671 * 20 18 16 23 23 H 1.48497 * 109.47275 * 239.99466 * 20 18 16 24 24 C 1.50704 * 109.47093 * 183.75553 * 4 2 1 25 25 C 1.38670 * 120.41905 * 119.99734 * 24 4 2 26 26 C 1.38627 * 118.41899 * 180.02562 * 25 24 4 27 27 C 1.38223 * 119.16331 * 0.02562 * 26 25 24 28 28 N 1.31856 * 120.76403 * 0.02562 * 27 26 25 29 29 C 1.31882 * 121.72354 * 359.70084 * 28 27 26 30 30 H 1.09004 * 109.46862 * 294.85093 * 1 2 3 31 31 H 1.09004 * 109.47150 * 54.85055 * 1 2 3 32 32 H 1.09001 * 109.47508 * 174.85342 * 1 2 3 33 33 H 1.08998 * 109.46809 * 240.00382 * 2 1 3 34 34 H 1.09000 * 109.47064 * 300.00087 * 3 2 1 35 35 H 1.09002 * 109.46893 * 59.99994 * 3 2 1 36 36 H 1.08997 * 109.47111 * 179.97438 * 3 2 1 37 37 H 0.97004 * 119.99807 * 355.02269 * 8 6 4 38 38 H 1.09000 * 109.46993 * 299.99691 * 11 9 8 39 39 H 1.08998 * 109.47607 * 59.99737 * 11 9 8 40 40 H 1.08999 * 109.47076 * 179.97438 * 11 9 8 41 41 H 1.08999 * 109.47287 * 54.99602 * 12 9 8 42 42 H 1.08999 * 109.47253 * 175.00207 * 12 9 8 43 43 H 1.08999 * 109.46922 * 299.99974 * 13 12 9 44 44 H 1.08999 * 109.46853 * 60.00110 * 13 12 9 45 45 H 1.08999 * 109.47572 * 299.99900 * 14 13 12 46 46 H 1.08999 * 109.47008 * 60.00529 * 14 13 12 47 47 H 0.97003 * 119.99320 * 0.02562 * 15 14 13 48 48 H 0.97003 * 119.99605 * 180.02562 * 19 18 16 49 49 H 1.07997 * 120.79015 * 359.97438 * 25 24 4 50 50 H 1.08004 * 120.41665 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.62160 * 179.97438 * 27 26 25 52 52 H 1.08003 * 119.61950 * 180.31353 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6227 -0.2478 2.1379 6 6 1.6151 -2.1664 1.2035 7 8 1.5561 -2.7478 0.1408 8 7 1.3061 -2.8143 2.3442 9 6 0.7889 -4.1840 2.2916 10 1 1.2623 -4.7198 1.4688 11 6 -0.7251 -4.1494 2.0737 12 6 1.0983 -4.8970 3.6095 13 6 2.6133 -5.0421 3.7673 14 6 2.9227 -5.7545 5.0855 15 7 4.3732 -5.8940 5.2364 16 6 4.8904 -6.5054 6.3472 17 1 4.2289 -6.8851 7.1118 18 6 6.2649 -6.6371 6.4904 19 7 7.0709 -6.1748 5.5583 20 14 6.9703 -7.4705 8.0060 21 1 5.8620 -7.8981 8.8970 22 1 7.7616 -8.6580 7.5948 23 1 7.8484 -6.5177 8.7313 24 6 3.5441 -0.6412 1.2966 25 6 4.1814 -0.0304 2.3661 26 6 5.5667 0.0204 2.3671 27 6 6.2618 -0.5348 1.3092 28 7 5.6224 -1.1069 0.3081 29 6 4.3059 -1.1783 0.2764 30 1 -0.3633 0.4319 0.9326 31 1 -0.3634 0.5917 -0.8403 32 1 -0.3634 -1.0235 -0.0922 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.4261 -2.3737 3.2000 38 1 -1.1984 -3.6137 2.8965 39 1 -0.9456 -3.6415 1.1348 40 1 -1.1098 -5.1685 2.0341 41 1 0.7007 -4.3138 4.4401 42 1 0.6372 -5.8846 3.6052 43 1 3.0109 -5.6252 2.9367 44 1 3.0743 -4.0544 3.7716 45 1 2.5251 -5.1710 5.9160 46 1 2.4616 -6.7421 5.0817 47 1 4.9672 -5.5533 4.5494 48 1 8.0313 -6.2672 5.6582 49 1 3.6119 0.3961 3.1786 50 1 6.0961 0.4881 3.1841 51 1 7.3412 -0.4989 1.3022 52 1 3.8173 -1.6592 -0.5581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506943645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:41 Heat of formation + Delta-G solvation = -21.778806 kcal Electronic energy + Delta-G solvation = -29316.358313 eV Core-core repulsion = 25507.937847 eV Total energy + Delta-G solvation = -3808.420466 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 0.83 seconds Orbital eigenvalues (eV) -40.97802 -39.59325 -37.21867 -36.00059 -34.82086 -32.86333 -32.47380 -31.69129 -31.03329 -29.41439 -27.77556 -27.22732 -25.66554 -23.74889 -23.24469 -22.69877 -21.76494 -20.82592 -20.61641 -19.80440 -17.54176 -17.27480 -17.00546 -16.40806 -16.16309 -15.79663 -14.98891 -14.80911 -14.65716 -14.43580 -14.29149 -13.92354 -13.58305 -13.56371 -13.39836 -13.18003 -13.06846 -12.89907 -12.84934 -12.53895 -12.44436 -12.28509 -12.11893 -12.02784 -11.41780 -11.31334 -11.18903 -11.13877 -10.94295 -10.86852 -10.80407 -10.45790 -10.40645 -10.11568 -9.97988 -9.74451 -9.68246 -9.49247 -9.12268 -8.97298 -8.86261 -6.90391 -5.74829 -3.03714 0.97756 1.19392 2.54606 3.06622 3.43379 3.48649 3.51258 3.72583 4.25531 4.39271 4.50809 4.55827 4.57918 4.71921 4.76727 4.82586 4.87313 4.94917 5.02108 5.11351 5.15067 5.21270 5.35020 5.36952 5.40928 5.44395 5.54808 5.57394 5.58474 5.61230 5.66605 5.71025 5.78061 5.83637 5.95132 5.97466 5.99781 6.04048 6.05170 6.12341 6.14331 6.21027 6.36066 6.41168 6.48569 6.60781 6.87047 6.90247 7.42530 7.70989 7.92882 8.14414 8.43852 9.54662 10.13870 10.48200 11.48082 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003149 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.488910 B = 8890.081376 C =10911.302181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.077 4.077 3 C -0.145 4.145 4 C -0.056 4.056 5 H 0.096 0.904 6 C 0.526 3.474 7 O -0.535 6.535 8 N -0.719 5.719 9 C 0.139 3.861 10 H 0.089 0.911 11 C -0.161 4.161 12 C -0.122 4.122 13 C -0.124 4.124 14 C 0.154 3.846 15 N -0.735 5.735 16 C -0.239 4.239 17 H 0.070 0.930 18 C -0.015 4.015 19 N -0.932 5.932 20 Si 0.906 3.094 21 H -0.280 1.280 22 H -0.291 1.291 23 H -0.292 1.292 24 C -0.130 4.130 25 C -0.067 4.067 26 C -0.168 4.168 27 C 0.101 3.899 28 N -0.480 5.480 29 C 0.115 3.885 30 H 0.053 0.947 31 H 0.059 0.941 32 H 0.059 0.941 33 H 0.086 0.914 34 H 0.058 0.942 35 H 0.055 0.945 36 H 0.056 0.944 37 H 0.400 0.600 38 H 0.056 0.944 39 H 0.056 0.944 40 H 0.066 0.934 41 H 0.067 0.933 42 H 0.078 0.922 43 H 0.061 0.939 44 H 0.059 0.941 45 H 0.016 0.984 46 H 0.017 0.983 47 H 0.383 0.617 48 H 0.254 0.746 49 H 0.134 0.866 50 H 0.137 0.863 51 H 0.156 0.844 52 H 0.157 0.843 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 17.448 -9.830 24.770 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.096 4.096 3 C -0.203 4.203 4 C -0.078 4.078 5 H 0.114 0.886 6 C 0.311 3.689 7 O -0.412 6.412 8 N -0.370 5.370 9 C 0.035 3.965 10 H 0.107 0.893 11 C -0.219 4.219 12 C -0.161 4.161 13 C -0.162 4.162 14 C 0.026 3.974 15 N -0.379 5.379 16 C -0.370 4.370 17 H 0.088 0.912 18 C -0.211 4.211 19 N -0.581 5.581 20 Si 0.738 3.262 21 H -0.206 1.206 22 H -0.218 1.218 23 H -0.219 1.219 24 C -0.132 4.132 25 C -0.093 4.093 26 C -0.188 4.188 27 C -0.056 4.056 28 N -0.188 5.188 29 C -0.042 4.042 30 H 0.072 0.928 31 H 0.078 0.922 32 H 0.078 0.922 33 H 0.105 0.895 34 H 0.077 0.923 35 H 0.074 0.926 36 H 0.075 0.925 37 H 0.234 0.766 38 H 0.075 0.925 39 H 0.076 0.924 40 H 0.085 0.915 41 H 0.085 0.915 42 H 0.097 0.903 43 H 0.080 0.920 44 H 0.078 0.922 45 H 0.034 0.966 46 H 0.035 0.965 47 H 0.217 0.783 48 H 0.064 0.936 49 H 0.152 0.848 50 H 0.155 0.845 51 H 0.174 0.826 52 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -14.147 16.562 -11.123 24.457 hybrid contribution 0.315 0.168 1.955 1.987 sum -13.832 16.730 -9.168 23.564 Atomic orbital electron populations 1.21869 0.94601 1.02348 1.01795 1.21004 0.96010 0.95880 0.96658 1.21844 1.01305 0.95243 1.01869 1.20332 0.92245 0.93646 1.01605 0.88558 1.20320 0.76242 0.88192 0.84117 1.90687 1.52673 1.68149 1.29680 1.46135 1.66208 1.15894 1.08758 1.21055 0.93775 0.82138 0.99512 0.89252 1.22166 0.95527 1.02381 1.01838 1.21842 0.97572 1.00941 0.95714 1.21717 0.94096 1.01137 0.99284 1.20640 0.86964 0.96344 0.93461 1.42394 1.00202 1.70903 1.24353 1.19281 0.90401 1.29667 0.97689 0.91196 1.24757 0.96054 1.01846 0.98463 1.69680 1.02625 1.51653 1.34169 0.86122 0.78894 0.78826 0.82395 1.20571 1.21837 1.21875 1.20341 0.94659 1.01464 0.96785 1.21466 0.94777 0.96227 0.96816 1.22149 0.94766 1.01607 1.00268 1.22865 1.00729 0.92646 0.89350 1.67762 1.10031 1.14794 1.26262 1.22744 0.89284 0.94801 0.97395 0.92771 0.92198 0.92208 0.89539 0.92300 0.92618 0.92515 0.76591 0.92530 0.92446 0.91526 0.91480 0.90297 0.92016 0.92222 0.96647 0.96528 0.78349 0.93578 0.84817 0.84531 0.82644 0.82584 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.16 8.90 37.16 0.33 -0.83 16 2 C -0.08 -0.66 2.01 -90.62 -0.18 -0.84 16 3 C -0.15 -1.07 8.89 37.16 0.33 -0.74 16 4 C -0.06 -0.52 1.97 -92.93 -0.18 -0.70 16 5 H 0.10 0.68 7.93 -51.93 -0.41 0.26 16 6 C 0.53 6.16 5.57 -10.99 -0.06 6.10 16 7 O -0.54 -7.99 15.01 5.56 0.08 -7.90 16 8 N -0.72 -7.64 4.53 -53.81 -0.24 -7.89 16 9 C 0.14 1.58 2.62 -67.93 -0.18 1.40 16 10 H 0.09 1.23 7.51 -51.93 -0.39 0.84 16 11 C -0.16 -1.52 9.48 37.16 0.35 -1.17 16 12 C -0.12 -1.45 4.75 -26.73 -0.13 -1.58 16 13 C -0.12 -2.02 5.22 -26.73 -0.14 -2.16 16 14 C 0.15 3.12 6.26 -4.04 -0.03 3.10 16 15 N -0.73 -19.27 5.60 -59.91 -0.34 -19.61 16 16 C -0.24 -6.87 9.99 -15.06 -0.15 -7.02 16 17 H 0.07 1.95 7.83 -52.49 -0.41 1.54 16 18 C -0.02 -0.45 5.50 -17.43 -0.10 -0.55 16 19 N -0.93 -28.85 13.06 55.49 0.72 -28.12 16 20 Si 0.91 22.71 29.55 -169.99 -5.02 17.69 16 21 H -0.28 -6.78 7.11 56.52 0.40 -6.38 16 22 H -0.29 -7.33 7.11 56.52 0.40 -6.93 16 23 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 24 C -0.13 -1.41 3.33 -104.48 -0.35 -1.76 16 25 C -0.07 -0.66 9.81 -39.28 -0.39 -1.04 16 26 C -0.17 -1.76 10.11 -39.44 -0.40 -2.16 16 27 C 0.10 1.23 11.18 -17.55 -0.20 1.03 16 28 N -0.48 -6.86 10.36 -13.25 -0.14 -7.00 16 29 C 0.12 1.51 10.03 -17.55 -0.18 1.34 16 30 H 0.05 0.36 8.14 -51.93 -0.42 -0.06 16 31 H 0.06 0.42 8.14 -51.93 -0.42 -0.01 16 32 H 0.06 0.56 7.26 -51.93 -0.38 0.19 16 33 H 0.09 0.89 7.14 -51.93 -0.37 0.52 16 34 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 35 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 36 H 0.06 0.48 7.11 -51.93 -0.37 0.11 16 37 H 0.40 3.57 8.60 -40.82 -0.35 3.22 16 38 H 0.06 0.47 8.14 -51.93 -0.42 0.05 16 39 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 40 H 0.07 0.58 8.14 -51.93 -0.42 0.16 16 41 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 42 H 0.08 0.89 8.14 -51.93 -0.42 0.47 16 43 H 0.06 1.09 8.14 -51.93 -0.42 0.67 16 44 H 0.06 0.99 7.75 -51.93 -0.40 0.59 16 45 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 46 H 0.02 0.35 8.14 -51.93 -0.42 -0.08 16 47 H 0.38 10.67 7.67 -40.82 -0.31 10.35 16 48 H 0.25 7.57 8.31 -40.82 -0.34 7.23 16 49 H 0.13 0.96 8.00 -52.49 -0.42 0.54 16 50 H 0.14 1.12 8.06 -52.48 -0.42 0.69 16 51 H 0.16 1.55 8.06 -52.49 -0.42 1.12 16 52 H 0.16 2.09 7.19 -52.48 -0.38 1.72 16 LS Contribution 421.18 15.07 6.35 6.35 Total: -1.00 -34.43 421.18 -9.47 -43.90 By element: Atomic # 1 Polarization: 19.42 SS G_CDS: -9.25 Total: 10.17 kcal Atomic # 6 Polarization: -5.95 SS G_CDS: -1.63 Total: -7.58 kcal Atomic # 7 Polarization: -62.63 SS G_CDS: 0.01 Total: -62.62 kcal Atomic # 8 Polarization: -7.99 SS G_CDS: 0.08 Total: -7.90 kcal Atomic # 14 Polarization: 22.71 SS G_CDS: -5.02 Total: 17.69 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -34.43 -9.47 -43.90 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506943645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 22.116 kcal (2) G-P(sol) polarization free energy of solvation -34.429 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.312 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.466 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.895 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.779 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.83 seconds