Wall clock time and date at job start Tue Mar 31 2020 17:17:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53000 * 109.47054 * 2 1 4 4 C 1.52996 * 109.47081 * 120.00260 * 2 1 3 5 5 H 1.09004 * 109.46998 * 303.75360 * 4 2 1 6 6 C 1.50694 * 109.47224 * 63.75575 * 4 2 1 7 7 O 1.21279 * 120.00302 * 34.56950 * 6 4 2 8 8 N 1.34776 * 119.99960 * 214.29202 * 6 4 2 9 9 C 1.46503 * 120.00307 * 175.02407 * 8 6 4 10 10 H 1.09000 * 109.47138 * 34.99726 * 9 8 6 11 11 C 1.53003 * 109.46714 * 275.00124 * 9 8 6 12 12 C 1.52995 * 109.47485 * 155.00079 * 9 8 6 13 13 C 1.53003 * 109.46950 * 294.99852 * 12 9 8 14 14 C 1.53001 * 109.46910 * 179.97438 * 13 12 9 15 15 N 1.46503 * 109.47118 * 179.97438 * 14 13 12 16 16 C 1.36933 * 120.00140 * 180.02562 * 15 14 13 17 17 H 1.07998 * 119.99894 * 0.02562 * 16 15 14 18 18 C 1.38819 * 119.99862 * 180.02562 * 16 15 14 19 19 N 1.31615 * 119.99790 * 359.97438 * 18 16 15 20 20 Si 1.86793 * 119.99794 * 179.97438 * 18 16 15 21 21 H 1.48499 * 109.47371 * 359.97438 * 20 18 16 22 22 H 1.48504 * 109.47409 * 119.99671 * 20 18 16 23 23 H 1.48497 * 109.47275 * 239.99466 * 20 18 16 24 24 C 1.50704 * 109.47093 * 183.75553 * 4 2 1 25 25 C 1.38670 * 120.41905 * 119.99734 * 24 4 2 26 26 C 1.38627 * 118.41899 * 180.02562 * 25 24 4 27 27 C 1.38223 * 119.16331 * 0.02562 * 26 25 24 28 28 N 1.31856 * 120.76403 * 0.02562 * 27 26 25 29 29 C 1.31882 * 121.72354 * 359.70084 * 28 27 26 30 30 H 1.09004 * 109.46862 * 294.85093 * 1 2 3 31 31 H 1.09004 * 109.47150 * 54.85055 * 1 2 3 32 32 H 1.09001 * 109.47508 * 174.85342 * 1 2 3 33 33 H 1.08998 * 109.46809 * 240.00382 * 2 1 3 34 34 H 1.09000 * 109.47064 * 300.00087 * 3 2 1 35 35 H 1.09002 * 109.46893 * 59.99994 * 3 2 1 36 36 H 1.08997 * 109.47111 * 179.97438 * 3 2 1 37 37 H 0.97004 * 119.99807 * 355.02269 * 8 6 4 38 38 H 1.09000 * 109.46993 * 299.99691 * 11 9 8 39 39 H 1.08998 * 109.47607 * 59.99737 * 11 9 8 40 40 H 1.08999 * 109.47076 * 179.97438 * 11 9 8 41 41 H 1.08999 * 109.47287 * 54.99602 * 12 9 8 42 42 H 1.08999 * 109.47253 * 175.00207 * 12 9 8 43 43 H 1.08999 * 109.46922 * 299.99974 * 13 12 9 44 44 H 1.08999 * 109.46853 * 60.00110 * 13 12 9 45 45 H 1.08999 * 109.47572 * 299.99900 * 14 13 12 46 46 H 1.08999 * 109.47008 * 60.00529 * 14 13 12 47 47 H 0.97003 * 119.99320 * 0.02562 * 15 14 13 48 48 H 0.97003 * 119.99605 * 180.02562 * 19 18 16 49 49 H 1.07997 * 120.79015 * 359.97438 * 25 24 4 50 50 H 1.08004 * 120.41665 * 180.02562 * 26 25 24 51 51 H 1.08002 * 119.62160 * 179.97438 * 27 26 25 52 52 H 1.08003 * 119.61950 * 180.31353 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7213 1.2492 5 1 1.6227 -0.2478 2.1379 6 6 1.6151 -2.1664 1.2035 7 8 1.5561 -2.7478 0.1408 8 7 1.3061 -2.8143 2.3442 9 6 0.7889 -4.1840 2.2916 10 1 1.2623 -4.7198 1.4688 11 6 -0.7251 -4.1494 2.0737 12 6 1.0983 -4.8970 3.6095 13 6 2.6133 -5.0421 3.7673 14 6 2.9227 -5.7545 5.0855 15 7 4.3732 -5.8940 5.2364 16 6 4.8904 -6.5054 6.3472 17 1 4.2289 -6.8851 7.1118 18 6 6.2649 -6.6371 6.4904 19 7 7.0709 -6.1748 5.5583 20 14 6.9703 -7.4705 8.0060 21 1 5.8620 -7.8981 8.8970 22 1 7.7616 -8.6580 7.5948 23 1 7.8484 -6.5177 8.7313 24 6 3.5441 -0.6412 1.2966 25 6 4.1814 -0.0304 2.3661 26 6 5.5667 0.0204 2.3671 27 6 6.2618 -0.5348 1.3092 28 7 5.6224 -1.1069 0.3081 29 6 4.3059 -1.1783 0.2764 30 1 -0.3633 0.4319 0.9326 31 1 -0.3634 0.5917 -0.8403 32 1 -0.3634 -1.0235 -0.0922 33 1 1.8933 -0.5138 -0.8900 34 1 1.6766 1.9563 -0.8900 35 1 1.6766 1.9563 0.8900 36 1 3.1299 1.4425 0.0005 37 1 1.4261 -2.3737 3.2000 38 1 -1.1984 -3.6137 2.8965 39 1 -0.9456 -3.6415 1.1348 40 1 -1.1098 -5.1685 2.0341 41 1 0.7007 -4.3138 4.4401 42 1 0.6372 -5.8846 3.6052 43 1 3.0109 -5.6252 2.9367 44 1 3.0743 -4.0544 3.7716 45 1 2.5251 -5.1710 5.9160 46 1 2.4616 -6.7421 5.0817 47 1 4.9672 -5.5533 4.5494 48 1 8.0313 -6.2672 5.6582 49 1 3.6119 0.3961 3.1786 50 1 6.0961 0.4881 3.1841 51 1 7.3412 -0.4989 1.3022 52 1 3.8173 -1.6592 -0.5581 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506943645.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:40 Heat of formation + Delta-G solvation = -43.670007 kcal Electronic energy + Delta-G solvation = -29317.307587 eV Core-core repulsion = 25507.937847 eV Total energy + Delta-G solvation = -3809.369740 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -41.85521 -40.52333 -38.23954 -37.03560 -36.40201 -34.21967 -33.56883 -32.71114 -32.26517 -30.86998 -28.51260 -27.88894 -27.23469 -24.87994 -24.63293 -23.71120 -22.76422 -22.26672 -21.55789 -20.58182 -19.14337 -18.42325 -18.12679 -17.37272 -17.04949 -16.68270 -16.62538 -15.96939 -15.79979 -15.43678 -15.42886 -15.23639 -15.12398 -14.63024 -14.44454 -14.26284 -13.99143 -13.90374 -13.57836 -13.50019 -13.40807 -13.18014 -13.04436 -13.01204 -12.81825 -12.81039 -12.40759 -12.21927 -12.11250 -12.04903 -11.89519 -11.83983 -11.74182 -11.61973 -11.49913 -11.03426 -10.96295 -10.63488 -10.41140 -10.05578 -9.87362 -9.02814 -7.96952 -5.26916 0.09124 0.33583 1.45836 1.47271 1.57469 1.63021 2.21299 2.54440 2.82896 3.36749 3.44892 3.58945 3.67638 3.69507 3.79963 3.96261 4.00146 4.04831 4.08535 4.10872 4.21080 4.28305 4.37913 4.42205 4.50538 4.56745 4.63995 4.68056 4.70181 4.81307 4.81719 4.83221 4.83759 4.92967 4.99021 4.99750 5.01771 5.11589 5.17343 5.22912 5.24439 5.31264 5.35021 5.39745 5.41390 5.44457 5.48620 5.61332 5.75429 6.24951 6.57694 7.00981 7.27249 7.30271 8.06844 8.29132 9.26938 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.010773 B = 0.003149 C = 0.002566 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2598.488910 B = 8890.081376 C =10911.302181 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.075 4.075 3 C -0.139 4.139 4 C -0.049 4.049 5 H 0.131 0.869 6 C 0.522 3.478 7 O -0.575 6.575 8 N -0.713 5.713 9 C 0.142 3.858 10 H 0.058 0.942 11 C -0.152 4.152 12 C -0.109 4.109 13 C -0.111 4.111 14 C 0.151 3.849 15 N -0.751 5.751 16 C -0.246 4.246 17 H 0.078 0.922 18 C -0.078 4.078 19 N -0.971 5.971 20 Si 0.976 3.024 21 H -0.263 1.263 22 H -0.294 1.294 23 H -0.291 1.291 24 C -0.125 4.125 25 C -0.065 4.065 26 C -0.167 4.167 27 C 0.078 3.922 28 N -0.517 5.517 29 C 0.091 3.909 30 H 0.074 0.926 31 H 0.067 0.933 32 H 0.039 0.961 33 H 0.058 0.942 34 H 0.064 0.936 35 H 0.075 0.925 36 H 0.042 0.958 37 H 0.412 0.588 38 H 0.076 0.924 39 H 0.045 0.955 40 H 0.075 0.925 41 H 0.091 0.909 42 H 0.089 0.911 43 H 0.038 0.962 44 H 0.054 0.946 45 H 0.029 0.971 46 H 0.019 0.981 47 H 0.370 0.630 48 H 0.251 0.749 49 H 0.172 0.828 50 H 0.164 0.836 51 H 0.169 0.831 52 H 0.138 0.862 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.647 18.854 -7.126 26.142 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.094 4.094 3 C -0.196 4.196 4 C -0.071 4.071 5 H 0.149 0.851 6 C 0.309 3.691 7 O -0.454 6.454 8 N -0.364 5.364 9 C 0.038 3.962 10 H 0.076 0.924 11 C -0.210 4.210 12 C -0.147 4.147 13 C -0.149 4.149 14 C 0.025 3.975 15 N -0.393 5.393 16 C -0.378 4.378 17 H 0.096 0.904 18 C -0.270 4.270 19 N -0.622 5.622 20 Si 0.804 3.196 21 H -0.188 1.188 22 H -0.222 1.222 23 H -0.218 1.218 24 C -0.127 4.127 25 C -0.090 4.090 26 C -0.186 4.186 27 C -0.079 4.079 28 N -0.226 5.226 29 C -0.066 4.066 30 H 0.093 0.907 31 H 0.086 0.914 32 H 0.058 0.942 33 H 0.077 0.923 34 H 0.083 0.917 35 H 0.094 0.906 36 H 0.061 0.939 37 H 0.248 0.752 38 H 0.095 0.905 39 H 0.064 0.936 40 H 0.094 0.906 41 H 0.110 0.890 42 H 0.107 0.893 43 H 0.057 0.943 44 H 0.073 0.927 45 H 0.047 0.953 46 H 0.037 0.963 47 H 0.201 0.799 48 H 0.060 0.940 49 H 0.189 0.811 50 H 0.181 0.819 51 H 0.186 0.814 52 H 0.156 0.844 Dipole moment (debyes) X Y Z Total from point charges -16.273 17.972 -8.389 25.656 hybrid contribution 0.936 -0.287 1.080 1.458 sum -15.337 17.685 -7.310 24.524 Atomic orbital electron populations 1.21825 0.93649 1.01389 1.03225 1.20961 0.96703 0.96387 0.95325 1.21787 1.00329 0.94317 1.03152 1.20390 0.91211 0.92129 1.03352 0.85086 1.20777 0.75538 0.89130 0.83679 1.90674 1.54279 1.69199 1.31229 1.46109 1.65637 1.15580 1.09097 1.20944 0.95044 0.82186 0.98066 0.92383 1.22077 0.93727 1.03186 1.02006 1.21750 0.94030 1.02150 0.96752 1.21566 0.97325 0.99755 0.96223 1.20853 0.83794 0.97020 0.95839 1.42675 1.02518 1.70706 1.23449 1.19708 0.90852 1.28912 0.98304 0.90420 1.25637 0.96569 1.03192 1.01651 1.69848 1.02568 1.53475 1.36334 0.85037 0.78231 0.77355 0.78927 1.18761 1.22177 1.21767 1.20433 0.95324 1.00724 0.96247 1.21912 0.94828 0.95243 0.97045 1.22498 0.95378 1.00642 1.00119 1.23230 1.01662 0.93196 0.89770 1.67662 1.10830 1.16231 1.27866 1.22647 0.89436 0.96279 0.98245 0.90738 0.91440 0.94222 0.92320 0.91721 0.90630 0.93930 0.75198 0.90507 0.93591 0.90624 0.89001 0.89297 0.94321 0.92723 0.95350 0.96332 0.79902 0.94032 0.81082 0.81870 0.81422 0.84409 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.04 8.90 71.98 0.64 -1.40 16 2 C -0.07 -1.25 2.01 -10.80 -0.02 -1.27 16 3 C -0.14 -1.82 8.89 71.98 0.64 -1.18 16 4 C -0.05 -0.84 1.97 -12.29 -0.02 -0.86 16 5 H 0.13 1.33 7.93 -2.39 -0.02 1.31 16 6 C 0.52 12.12 5.57 87.66 0.49 12.61 16 7 O -0.57 -18.05 15.01 -3.03 -0.05 -18.10 16 8 N -0.71 -14.14 4.53 -442.54 -2.00 -16.14 16 9 C 0.14 3.06 2.62 44.99 0.12 3.18 16 10 H 0.06 1.64 7.51 -2.39 -0.02 1.62 16 11 C -0.15 -2.57 9.48 71.98 0.68 -1.89 16 12 C -0.11 -2.33 4.75 30.59 0.15 -2.19 16 13 C -0.11 -3.51 5.22 30.60 0.16 -3.35 16 14 C 0.15 5.97 6.26 86.38 0.54 6.51 16 15 N -0.75 -39.44 5.60 -343.44 -1.92 -41.37 16 16 C -0.25 -14.00 9.99 84.04 0.84 -13.16 16 17 H 0.08 4.21 7.83 -2.91 -0.02 4.19 16 18 C -0.08 -4.59 5.50 84.86 0.47 -4.12 16 19 N -0.97 -60.93 13.06 21.65 0.28 -60.65 16 20 Si 0.98 46.51 29.55 68.60 2.03 48.54 16 21 H -0.26 -11.67 7.11 99.48 0.71 -10.96 16 22 H -0.29 -14.09 7.11 99.48 0.71 -13.38 16 23 H -0.29 -13.71 7.11 99.48 0.71 -13.00 16 24 C -0.12 -2.63 3.33 -19.77 -0.07 -2.70 16 25 C -0.06 -1.13 9.81 22.47 0.22 -0.91 16 26 C -0.17 -3.25 10.11 22.36 0.23 -3.03 16 27 C 0.08 1.93 11.18 84.69 0.95 2.88 16 28 N -0.52 -15.73 10.36 -195.84 -2.03 -17.76 16 29 C 0.09 2.55 10.03 84.67 0.85 3.40 16 30 H 0.07 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.07 0.85 8.14 -2.38 -0.02 0.83 16 32 H 0.04 0.73 7.26 -2.39 -0.02 0.71 16 33 H 0.06 1.31 7.14 -2.39 -0.02 1.29 16 34 H 0.06 0.77 8.14 -2.39 -0.02 0.76 16 35 H 0.07 0.71 8.14 -2.39 -0.02 0.69 16 36 H 0.04 0.69 7.11 -2.39 -0.02 0.67 16 37 H 0.41 6.16 8.60 -92.71 -0.80 5.36 16 38 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 39 H 0.04 0.90 8.14 -2.39 -0.02 0.88 16 40 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 41 H 0.09 1.59 8.14 -2.39 -0.02 1.57 16 42 H 0.09 1.79 8.14 -2.39 -0.02 1.77 16 43 H 0.04 1.39 8.14 -2.39 -0.02 1.37 16 44 H 0.05 1.78 7.75 -2.39 -0.02 1.76 16 45 H 0.03 1.07 8.14 -2.39 -0.02 1.05 16 46 H 0.02 0.74 8.14 -2.39 -0.02 0.72 16 47 H 0.37 21.03 7.67 -92.71 -0.71 20.32 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.17 1.66 8.00 -2.91 -0.02 1.64 16 50 H 0.16 2.23 8.06 -2.91 -0.02 2.21 16 51 H 0.17 3.45 8.06 -2.91 -0.02 3.43 16 52 H 0.14 4.20 7.19 -2.91 -0.02 4.18 16 Total: -1.00 -77.29 421.18 2.55 -74.74 By element: Atomic # 1 Polarization: 38.83 SS G_CDS: -0.61 Total: 38.22 kcal Atomic # 6 Polarization: -14.34 SS G_CDS: 6.85 Total: -7.49 kcal Atomic # 7 Polarization: -130.24 SS G_CDS: -5.67 Total: -135.91 kcal Atomic # 8 Polarization: -18.05 SS G_CDS: -0.05 Total: -18.10 kcal Atomic # 14 Polarization: 46.51 SS G_CDS: 2.03 Total: 48.54 kcal Total: -77.29 2.55 -74.74 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506943645.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 31.074 kcal (2) G-P(sol) polarization free energy of solvation -77.292 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -46.218 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.548 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.744 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.670 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds