Wall clock time and date at job start Tue Mar 31 2020 17:17:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47271 * 239.99834 * 2 1 3 5 5 C 1.52997 * 109.47534 * 175.00155 * 4 2 1 6 6 C 1.52996 * 109.47534 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47113 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99799 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00121 * 0.02562 * 8 7 6 10 10 C 1.38815 * 119.99943 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00025 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99991 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46862 * 60.00338 * 12 10 8 14 14 H 1.48500 * 109.46869 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47319 * 300.00183 * 12 10 8 16 16 N 1.46504 * 109.46973 * 119.99792 * 2 1 3 17 17 C 1.34770 * 120.00100 * 275.00123 * 16 2 1 18 18 O 1.21281 * 120.00166 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99820 * 179.97438 * 17 16 2 20 20 H 1.08999 * 109.47200 * 327.40705 * 19 17 16 21 21 C 1.50698 * 109.46872 * 87.40446 * 19 17 16 22 22 C 1.38238 * 120.00139 * 73.22968 * 21 19 17 23 23 C 1.38238 * 120.00372 * 179.78655 * 22 21 19 24 24 C 1.38235 * 119.99442 * 0.43688 * 23 22 21 25 25 C 1.38234 * 120.00232 * 359.81952 * 24 23 22 26 26 C 1.38233 * 120.00059 * 359.96946 * 25 24 23 27 27 N 1.46898 * 109.46673 * 207.40400 * 19 17 16 28 28 C 1.46900 * 111.00233 * 60.35965 * 27 19 17 29 29 C 1.46904 * 110.99806 * 184.31084 * 27 19 17 30 30 H 1.09001 * 109.47541 * 299.99955 * 1 2 3 31 31 H 1.09005 * 109.47221 * 59.99960 * 1 2 3 32 32 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47618 * 295.00181 * 4 2 1 34 34 H 1.08998 * 109.47502 * 55.00118 * 4 2 1 35 35 H 1.09003 * 109.47307 * 300.00174 * 5 4 2 36 36 H 1.09007 * 109.47010 * 60.00021 * 5 4 2 37 37 H 1.09002 * 109.47119 * 299.99856 * 6 5 4 38 38 H 1.09001 * 109.47191 * 60.00363 * 6 5 4 39 39 H 0.96997 * 120.00273 * 359.97438 * 7 6 5 40 40 H 0.96998 * 120.00271 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99558 * 94.99784 * 16 2 1 42 42 H 1.08003 * 119.99696 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.99842 * 180.27699 * 23 22 21 44 44 H 1.08001 * 119.99892 * 179.83215 * 24 23 22 45 45 H 1.07997 * 120.00132 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.99987 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.46816 * 59.99549 * 28 27 19 48 48 H 1.09000 * 109.47022 * 179.97438 * 28 27 19 49 49 H 1.09000 * 109.47043 * 299.99557 * 28 27 19 50 50 H 1.09005 * 109.47216 * 65.37602 * 29 27 19 51 51 H 1.08996 * 109.47462 * 185.37792 * 29 27 19 52 52 H 1.09005 * 109.47259 * 305.38331 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0748 -1.3341 -2.5632 7 7 5.5349 -1.2312 -2.6245 8 6 6.2186 -1.8047 -3.6632 9 1 5.6814 -2.3324 -4.4374 10 6 7.6020 -1.7068 -3.7216 11 7 8.2567 -1.0633 -2.7785 12 14 8.5348 -2.4897 -5.1382 13 1 8.0786 -1.8948 -6.4200 14 1 9.9896 -2.2449 -4.9682 15 1 8.2777 -3.9522 -5.1520 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6487 -0.7289 3.5878 20 1 2.3207 -1.7681 3.5664 21 6 4.1545 -0.6780 3.6183 22 6 4.8002 0.5060 3.9220 23 6 6.1814 0.5516 3.9543 24 6 6.9171 -0.5846 3.6740 25 6 6.2716 -1.7673 3.3651 26 6 4.8904 -1.8139 3.3371 27 7 2.1121 -0.0704 4.7863 28 6 0.6436 -0.1083 4.7949 29 6 2.6615 -0.6728 6.0084 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0729 -0.4259 37 1 3.7864 -2.3844 -2.5199 38 1 3.6402 -0.8741 -3.4507 39 1 6.0172 -0.7563 -1.9298 40 1 9.2234 -0.9952 -2.8190 41 1 2.2489 -1.6318 1.1527 42 1 4.2253 1.3947 4.1371 43 1 6.6856 1.4756 4.1960 44 1 7.9963 -0.5484 3.6965 45 1 6.8464 -2.6551 3.1465 46 1 4.3860 -2.7381 3.0961 47 1 0.3069 -1.1450 4.7853 48 1 0.2727 0.3855 5.6931 49 1 0.2617 0.4061 3.9131 50 1 3.7342 -0.4853 6.0553 51 1 2.1772 -0.2324 6.8799 52 1 2.4807 -1.7477 5.9966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001506951447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:26 Heat of formation + Delta-G solvation = -0.078964 kcal Electronic energy + Delta-G solvation = -29467.779381 eV Core-core repulsion = 25660.299890 eV Total energy + Delta-G solvation = -3807.479491 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.61162 -38.92649 -37.30851 -36.28410 -34.77944 -32.71403 -31.98756 -30.91991 -30.83930 -29.37747 -27.98542 -27.23878 -25.64251 -23.37892 -22.89003 -22.44731 -22.05911 -20.83053 -20.62429 -20.08301 -17.44619 -16.98539 -16.98323 -16.56999 -15.71295 -15.61294 -14.86912 -14.64128 -14.59578 -14.46446 -14.33895 -14.25586 -13.66015 -13.49354 -13.37853 -13.17903 -12.96613 -12.87639 -12.62409 -12.53949 -12.36414 -12.26445 -12.11263 -12.02965 -11.76964 -11.27904 -11.15024 -11.04636 -11.00801 -10.82802 -10.77528 -10.45364 -10.37369 -10.01158 -9.88848 -9.65588 -9.05927 -8.87084 -8.83542 -8.68598 -8.60334 -6.88344 -5.72914 -3.01602 1.26850 1.46147 2.62959 2.97010 3.45211 3.49270 3.50610 3.64639 3.96063 4.50333 4.58184 4.68481 4.71713 4.85464 4.91682 5.05704 5.07236 5.09063 5.11498 5.18117 5.21338 5.30687 5.36620 5.43919 5.52261 5.58219 5.60158 5.64467 5.64912 5.69653 5.73607 5.81462 5.93567 5.98342 6.07374 6.09848 6.15744 6.24231 6.39318 6.44106 6.44888 6.46725 6.52494 6.58509 6.70609 6.75048 6.90344 6.93376 7.01381 7.49761 7.71652 8.23485 8.45922 9.56594 10.16186 10.50707 11.49829 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003242 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.876849 B = 8634.567752 C =10637.052074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.142 3.858 3 H 0.088 0.912 4 C -0.122 4.122 5 C -0.125 4.125 6 C 0.154 3.846 7 N -0.734 5.734 8 C -0.240 4.240 9 H 0.069 0.931 10 C -0.014 4.014 11 N -0.933 5.933 12 Si 0.906 3.094 13 H -0.286 1.286 14 H -0.291 1.291 15 H -0.286 1.286 16 N -0.720 5.720 17 C 0.525 3.475 18 O -0.519 6.519 19 C 0.113 3.887 20 H 0.064 0.936 21 C -0.090 4.090 22 C -0.083 4.083 23 C -0.124 4.124 24 C -0.108 4.108 25 C -0.116 4.116 26 C -0.108 4.108 27 N -0.519 5.519 28 C 0.021 3.979 29 C 0.025 3.975 30 H 0.057 0.943 31 H 0.066 0.934 32 H 0.055 0.945 33 H 0.066 0.934 34 H 0.078 0.922 35 H 0.061 0.939 36 H 0.061 0.939 37 H 0.015 0.985 38 H 0.016 0.984 39 H 0.384 0.616 40 H 0.255 0.745 41 H 0.399 0.601 42 H 0.131 0.869 43 H 0.122 0.878 44 H 0.122 0.878 45 H 0.124 0.876 46 H 0.119 0.881 47 H 0.023 0.977 48 H 0.072 0.928 49 H 0.076 0.924 50 H 0.074 0.926 51 H 0.070 0.930 52 H 0.026 0.974 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.578 -0.863 18.355 23.456 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.038 3.962 3 H 0.106 0.894 4 C -0.161 4.161 5 C -0.162 4.162 6 C 0.026 3.974 7 N -0.378 5.378 8 C -0.371 4.371 9 H 0.087 0.913 10 C -0.210 4.210 11 N -0.581 5.581 12 Si 0.738 3.262 13 H -0.213 1.213 14 H -0.217 1.217 15 H -0.213 1.213 16 N -0.372 5.372 17 C 0.310 3.690 18 O -0.394 6.394 19 C 0.001 3.999 20 H 0.081 0.919 21 C -0.090 4.090 22 C -0.101 4.101 23 C -0.142 4.142 24 C -0.127 4.127 25 C -0.134 4.134 26 C -0.127 4.127 27 N -0.243 5.243 28 C -0.127 4.127 29 C -0.123 4.123 30 H 0.076 0.924 31 H 0.085 0.915 32 H 0.074 0.926 33 H 0.085 0.915 34 H 0.097 0.903 35 H 0.080 0.920 36 H 0.080 0.920 37 H 0.033 0.967 38 H 0.034 0.966 39 H 0.217 0.783 40 H 0.065 0.935 41 H 0.233 0.767 42 H 0.149 0.851 43 H 0.140 0.860 44 H 0.140 0.860 45 H 0.142 0.858 46 H 0.137 0.863 47 H 0.041 0.959 48 H 0.091 0.909 49 H 0.095 0.905 50 H 0.093 0.907 51 H 0.089 0.911 52 H 0.044 0.956 Dipole moment (debyes) X Y Z Total from point charges -14.623 0.418 18.225 23.370 hybrid contribution 0.679 -1.667 -0.665 1.919 sum -13.944 -1.248 17.560 22.458 Atomic orbital electron populations 1.22165 0.95520 1.01881 1.02367 1.21027 0.93462 0.97837 0.83844 0.89353 1.21844 0.96950 1.00679 0.96599 1.21718 0.93582 1.01439 0.99511 1.20637 0.86220 0.96353 0.94187 1.42372 1.00174 1.66265 1.28972 1.19194 0.89447 1.27234 1.01254 0.91334 1.24741 0.96436 1.01246 0.98606 1.69656 1.07197 1.46965 1.34326 0.86277 0.79004 0.78956 0.82014 1.21290 1.21677 1.21316 1.46098 1.67395 1.14089 1.09664 1.20155 0.77360 0.87460 0.84070 1.90690 1.48767 1.15339 1.84588 1.20468 0.92816 0.96337 0.90274 0.91863 1.19240 0.92131 0.94629 1.03034 1.21065 0.94172 0.97669 0.97223 1.21196 0.94012 0.98453 1.00546 1.21245 1.00144 0.92973 0.98289 1.21107 0.94218 0.98444 0.99636 1.20974 0.94349 0.97417 0.99938 1.61703 1.07237 1.54786 1.00623 1.22482 0.86773 0.99628 1.03830 1.22434 1.01577 0.96772 0.91471 0.92410 0.91539 0.92618 0.91509 0.90317 0.92031 0.92029 0.96678 0.96584 0.78300 0.93513 0.76733 0.85096 0.86003 0.85961 0.85765 0.86269 0.95880 0.90918 0.90510 0.90692 0.91104 0.95565 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.60 9.48 37.16 0.35 -1.25 16 2 C 0.14 1.68 2.57 -67.93 -0.17 1.50 16 3 H 0.09 1.25 7.58 -51.93 -0.39 0.85 16 4 C -0.12 -1.48 4.75 -26.73 -0.13 -1.61 16 5 C -0.12 -2.03 5.21 -26.73 -0.14 -2.17 16 6 C 0.15 3.13 6.26 -4.04 -0.03 3.11 16 7 N -0.73 -19.21 5.60 -59.91 -0.34 -19.54 16 8 C -0.24 -6.88 9.99 -15.06 -0.15 -7.04 16 9 H 0.07 1.90 7.83 -52.49 -0.41 1.49 16 10 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 11 N -0.93 -28.67 13.06 55.49 0.72 -27.95 16 12 Si 0.91 22.67 29.55 -169.99 -5.02 17.65 16 13 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 14 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 15 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 16 N -0.72 -8.22 4.53 -53.81 -0.24 -8.46 16 17 C 0.53 6.82 5.88 -10.99 -0.06 6.76 16 18 O -0.52 -8.45 15.21 5.56 0.08 -8.36 16 19 C 0.11 1.25 2.06 -70.02 -0.14 1.11 16 20 H 0.06 0.59 7.94 -51.93 -0.41 0.18 16 21 C -0.09 -1.07 3.64 -104.62 -0.38 -1.46 16 22 C -0.08 -1.07 8.38 -39.58 -0.33 -1.40 16 23 C -0.12 -1.52 10.05 -39.58 -0.40 -1.92 16 24 C -0.11 -1.32 10.05 -39.58 -0.40 -1.72 16 25 C -0.12 -1.41 10.05 -39.58 -0.40 -1.80 16 26 C -0.11 -1.25 9.67 -39.58 -0.38 -1.63 16 27 N -0.52 -5.56 4.14 -245.99 -1.02 -6.58 16 28 C 0.02 0.20 9.22 60.06 0.55 0.75 16 29 C 0.03 0.22 9.11 60.07 0.55 0.77 16 30 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 31 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 32 H 0.05 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 34 H 0.08 0.91 8.14 -51.93 -0.42 0.48 16 35 H 0.06 1.09 8.14 -51.93 -0.42 0.66 16 36 H 0.06 1.03 7.75 -51.92 -0.40 0.63 16 37 H 0.02 0.31 8.14 -51.93 -0.42 -0.11 16 38 H 0.02 0.33 8.14 -51.93 -0.42 -0.09 16 39 H 0.38 10.62 7.67 -40.82 -0.31 10.31 16 40 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 41 H 0.40 3.87 8.60 -40.82 -0.35 3.52 16 42 H 0.13 1.78 7.93 -52.48 -0.42 1.36 16 43 H 0.12 1.27 8.06 -52.49 -0.42 0.85 16 44 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 45 H 0.12 1.35 8.06 -52.49 -0.42 0.92 16 46 H 0.12 1.13 7.99 -52.49 -0.42 0.71 16 47 H 0.02 0.19 8.14 -51.93 -0.42 -0.24 16 48 H 0.07 0.59 8.06 -51.93 -0.42 0.17 16 49 H 0.08 0.86 6.40 -51.93 -0.33 0.53 16 50 H 0.07 0.71 6.56 -51.93 -0.34 0.37 16 51 H 0.07 0.52 8.03 -51.93 -0.42 0.11 16 52 H 0.03 0.21 8.13 -51.93 -0.42 -0.21 16 LS Contribution 421.51 15.07 6.35 6.35 Total: -1.00 -33.70 421.51 -10.48 -44.17 By element: Atomic # 1 Polarization: 20.49 SS G_CDS: -9.26 Total: 11.23 kcal Atomic # 6 Polarization: -6.76 SS G_CDS: -1.76 Total: -8.52 kcal Atomic # 7 Polarization: -61.65 SS G_CDS: -0.87 Total: -62.53 kcal Atomic # 8 Polarization: -8.45 SS G_CDS: 0.08 Total: -8.36 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.35 Total: 6.35 kcal Total: -33.70 -10.48 -44.17 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 44.095 kcal (2) G-P(sol) polarization free energy of solvation -33.698 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 10.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.476 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.174 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.079 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds