Wall clock time and date at job start Tue Mar 31 2020 17:17:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08999 * 109.47157 * 2 1 4 4 C 1.52996 * 109.47271 * 239.99834 * 2 1 3 5 5 C 1.52997 * 109.47534 * 175.00155 * 4 2 1 6 6 C 1.52996 * 109.47534 * 180.02562 * 5 4 2 7 7 N 1.46500 * 109.47113 * 180.02562 * 6 5 4 8 8 C 1.36940 * 119.99799 * 180.02562 * 7 6 5 9 9 H 1.08001 * 120.00121 * 0.02562 * 8 7 6 10 10 C 1.38815 * 119.99943 * 179.97438 * 8 7 6 11 11 N 1.31616 * 120.00025 * 0.02562 * 10 8 7 12 12 Si 1.86801 * 119.99991 * 179.97438 * 10 8 7 13 13 H 1.48496 * 109.46862 * 60.00338 * 12 10 8 14 14 H 1.48500 * 109.46869 * 180.02562 * 12 10 8 15 15 H 1.48495 * 109.47319 * 300.00183 * 12 10 8 16 16 N 1.46504 * 109.46973 * 119.99792 * 2 1 3 17 17 C 1.34770 * 120.00100 * 275.00123 * 16 2 1 18 18 O 1.21281 * 120.00166 * 0.02562 * 17 16 2 19 19 C 1.50706 * 119.99820 * 179.97438 * 17 16 2 20 20 H 1.08999 * 109.47200 * 327.40705 * 19 17 16 21 21 C 1.50698 * 109.46872 * 87.40446 * 19 17 16 22 22 C 1.38238 * 120.00139 * 73.22968 * 21 19 17 23 23 C 1.38238 * 120.00372 * 179.78655 * 22 21 19 24 24 C 1.38235 * 119.99442 * 0.43688 * 23 22 21 25 25 C 1.38234 * 120.00232 * 359.81952 * 24 23 22 26 26 C 1.38233 * 120.00059 * 359.96946 * 25 24 23 27 27 N 1.46898 * 109.46673 * 207.40400 * 19 17 16 28 28 C 1.46900 * 111.00233 * 60.35965 * 27 19 17 29 29 C 1.46904 * 110.99806 * 184.31084 * 27 19 17 30 30 H 1.09001 * 109.47541 * 299.99955 * 1 2 3 31 31 H 1.09005 * 109.47221 * 59.99960 * 1 2 3 32 32 H 1.08999 * 109.47157 * 180.02562 * 1 2 3 33 33 H 1.09001 * 109.47618 * 295.00181 * 4 2 1 34 34 H 1.08998 * 109.47502 * 55.00118 * 4 2 1 35 35 H 1.09003 * 109.47307 * 300.00174 * 5 4 2 36 36 H 1.09007 * 109.47010 * 60.00021 * 5 4 2 37 37 H 1.09002 * 109.47119 * 299.99856 * 6 5 4 38 38 H 1.09001 * 109.47191 * 60.00363 * 6 5 4 39 39 H 0.96997 * 120.00273 * 359.97438 * 7 6 5 40 40 H 0.96998 * 120.00271 * 179.97438 * 11 10 8 41 41 H 0.97000 * 119.99558 * 94.99784 * 16 2 1 42 42 H 1.08003 * 119.99696 * 359.97438 * 22 21 19 43 43 H 1.07998 * 119.99842 * 180.27699 * 23 22 21 44 44 H 1.08001 * 119.99892 * 179.83215 * 24 23 22 45 45 H 1.07997 * 120.00132 * 180.02562 * 25 24 23 46 46 H 1.08001 * 119.99987 * 180.02562 * 26 25 24 47 47 H 1.09005 * 109.46816 * 59.99549 * 28 27 19 48 48 H 1.09000 * 109.47022 * 179.97438 * 28 27 19 49 49 H 1.09000 * 109.47043 * 299.99557 * 28 27 19 50 50 H 1.09005 * 109.47216 * 65.37602 * 29 27 19 51 51 H 1.08996 * 109.47462 * 185.37792 * 29 27 19 52 52 H 1.09005 * 109.47259 * 305.38331 * 29 27 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0400 -0.7213 -1.2492 5 6 3.5648 -0.6134 -1.3137 6 6 4.0748 -1.3341 -2.5632 7 7 5.5349 -1.2312 -2.6245 8 6 6.2186 -1.8047 -3.6632 9 1 5.6814 -2.3324 -4.4374 10 6 7.6020 -1.7068 -3.7216 11 7 8.2567 -1.0633 -2.7785 12 14 8.5348 -2.4897 -5.1382 13 1 8.0786 -1.8948 -6.4200 14 1 9.9896 -2.2449 -4.9682 15 1 8.2777 -3.9522 -5.1520 16 7 2.0183 -0.6906 1.1962 17 6 2.1470 -0.0183 2.3571 18 8 1.8581 1.1584 2.4117 19 6 2.6487 -0.7289 3.5878 20 1 2.3207 -1.7681 3.5664 21 6 4.1545 -0.6780 3.6183 22 6 4.8002 0.5060 3.9220 23 6 6.1814 0.5516 3.9543 24 6 6.9171 -0.5846 3.6740 25 6 6.2716 -1.7673 3.3651 26 6 4.8904 -1.8139 3.3371 27 7 2.1121 -0.0704 4.7863 28 6 0.6436 -0.1083 4.7949 29 6 2.6615 -0.6728 6.0084 30 1 -0.3634 0.5138 0.8900 31 1 -0.3634 0.5139 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 1.7517 -1.7715 -1.2056 34 1 1.6054 -0.2618 -2.1369 35 1 3.8532 0.4369 -1.3573 36 1 3.9994 -1.0729 -0.4259 37 1 3.7864 -2.3844 -2.5199 38 1 3.6402 -0.8741 -3.4507 39 1 6.0172 -0.7563 -1.9298 40 1 9.2234 -0.9952 -2.8190 41 1 2.2489 -1.6318 1.1527 42 1 4.2253 1.3947 4.1371 43 1 6.6856 1.4756 4.1960 44 1 7.9963 -0.5484 3.6965 45 1 6.8464 -2.6551 3.1465 46 1 4.3860 -2.7381 3.0961 47 1 0.3069 -1.1450 4.7853 48 1 0.2727 0.3855 5.6931 49 1 0.2617 0.4061 3.9131 50 1 3.7342 -0.4853 6.0553 51 1 2.1772 -0.2324 6.8799 52 1 2.4807 -1.7477 5.9966 RHF calculation, no. of doubly occupied orbitals= 64 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001506951447.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Tue Mar 31 2020 17:17:24 Heat of formation + Delta-G solvation = -21.610790 kcal Electronic energy + Delta-G solvation = -29468.713071 eV Core-core repulsion = 25660.299890 eV Total energy + Delta-G solvation = -3808.413181 eV No. of doubly occupied orbitals = 64 Molecular weight (most abundant/longest-lived isotopes) = 333.216 amu Computer time = 1.46 seconds Orbital eigenvalues (eV) -41.56090 -39.89080 -38.28048 -37.41175 -36.42667 -34.20766 -33.17100 -32.21293 -31.78374 -30.83142 -28.74591 -28.05504 -27.21871 -24.88556 -23.94782 -23.41424 -23.10094 -22.33131 -21.62917 -21.02224 -19.11544 -18.38838 -17.88456 -17.54020 -16.65410 -16.62723 -16.53130 -15.82084 -15.73764 -15.49414 -15.37716 -15.26786 -15.18194 -15.06562 -14.39634 -14.26748 -14.07106 -13.94158 -13.62175 -13.44312 -13.33648 -13.18416 -13.14374 -13.03048 -12.87299 -12.73832 -12.53370 -12.39542 -12.26757 -12.08155 -11.95309 -11.93283 -11.84993 -11.71695 -11.49464 -10.92306 -10.91521 -10.05618 -9.81587 -9.63900 -9.34595 -8.99891 -7.94277 -5.23973 0.32983 0.50671 1.46808 1.50305 1.56481 1.63259 2.07213 2.56247 2.76948 3.09978 3.38768 3.60155 3.64526 3.84955 3.89958 3.99739 4.10439 4.13271 4.17728 4.28540 4.29920 4.30987 4.40545 4.42087 4.58694 4.59154 4.64504 4.67851 4.68701 4.72232 4.82285 4.85999 4.92716 4.99799 5.00077 5.02646 5.03658 5.12278 5.15798 5.31582 5.37829 5.42877 5.50473 5.53276 5.56625 5.59709 5.63834 5.88613 6.02224 6.09008 6.27368 6.58126 7.27431 7.32955 8.10006 8.32523 9.29034 Molecular weight = 333.22amu Principal moments of inertia in cm(-1) A = 0.011078 B = 0.003242 C = 0.002632 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2526.876849 B = 8634.567752 C =10637.052074 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.145 3.855 3 H 0.060 0.940 4 C -0.109 4.109 5 C -0.111 4.111 6 C 0.151 3.849 7 N -0.750 5.750 8 C -0.249 4.249 9 H 0.076 0.924 10 C -0.076 4.076 11 N -0.969 5.969 12 Si 0.975 3.025 13 H -0.278 1.278 14 H -0.295 1.295 15 H -0.275 1.275 16 N -0.713 5.713 17 C 0.523 3.477 18 O -0.558 6.558 19 C 0.118 3.882 20 H 0.087 0.913 21 C -0.091 4.091 22 C -0.097 4.097 23 C -0.134 4.134 24 C -0.122 4.122 25 C -0.128 4.128 26 C -0.111 4.111 27 N -0.539 5.539 28 C 0.025 3.975 29 C 0.029 3.971 30 H 0.044 0.956 31 H 0.077 0.923 32 H 0.073 0.927 33 H 0.089 0.911 34 H 0.090 0.910 35 H 0.041 0.959 36 H 0.055 0.945 37 H 0.026 0.974 38 H 0.018 0.982 39 H 0.371 0.629 40 H 0.251 0.749 41 H 0.409 0.591 42 H 0.117 0.883 43 H 0.133 0.867 44 H 0.133 0.867 45 H 0.136 0.864 46 H 0.143 0.857 47 H 0.039 0.961 48 H 0.083 0.917 49 H 0.055 0.945 50 H 0.063 0.937 51 H 0.083 0.917 52 H 0.038 0.962 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.954 -2.887 17.961 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.041 3.959 3 H 0.078 0.922 4 C -0.147 4.147 5 C -0.149 4.149 6 C 0.025 3.975 7 N -0.392 5.392 8 C -0.381 4.381 9 H 0.094 0.906 10 C -0.268 4.268 11 N -0.620 5.620 12 Si 0.803 3.197 13 H -0.204 1.204 14 H -0.221 1.221 15 H -0.201 1.201 16 N -0.365 5.365 17 C 0.309 3.691 18 O -0.436 6.436 19 C 0.006 3.994 20 H 0.105 0.895 21 C -0.092 4.092 22 C -0.115 4.115 23 C -0.152 4.152 24 C -0.140 4.140 25 C -0.146 4.146 26 C -0.129 4.129 27 N -0.264 5.264 28 C -0.123 4.123 29 C -0.118 4.118 30 H 0.063 0.937 31 H 0.096 0.904 32 H 0.092 0.908 33 H 0.108 0.892 34 H 0.108 0.892 35 H 0.059 0.941 36 H 0.074 0.926 37 H 0.044 0.956 38 H 0.036 0.964 39 H 0.202 0.798 40 H 0.060 0.940 41 H 0.245 0.755 42 H 0.135 0.865 43 H 0.151 0.849 44 H 0.151 0.849 45 H 0.153 0.847 46 H 0.161 0.839 47 H 0.058 0.942 48 H 0.102 0.898 49 H 0.074 0.926 50 H 0.082 0.918 51 H 0.102 0.898 52 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -16.047 -1.644 17.816 24.034 hybrid contribution 1.066 -1.010 -0.538 1.564 sum -14.981 -2.654 17.278 23.021 Atomic orbital electron populations 1.22076 0.93592 1.03048 1.02311 1.20940 0.94842 0.96324 0.83790 0.92203 1.21751 0.93458 1.02289 0.97203 1.21563 0.96574 0.99422 0.97305 1.20839 0.83225 0.97363 0.96048 1.42638 1.02490 1.65970 1.28129 1.19630 0.90043 1.26647 1.01775 0.90576 1.25606 0.97484 1.02376 1.01370 1.69825 1.07053 1.48728 1.36372 0.85198 0.77077 0.78452 0.78962 1.20433 1.22133 1.20101 1.46072 1.66741 1.14540 1.09194 1.20534 0.76679 0.87060 0.84873 1.90671 1.50559 1.17096 1.85244 1.20440 0.92054 0.97226 0.89651 0.89534 1.19361 0.92773 0.94428 1.02618 1.21066 0.94452 0.97779 0.98244 1.21385 0.94017 0.99162 1.00627 1.21480 1.00918 0.93128 0.98469 1.21388 0.94862 0.98826 0.99565 1.21243 0.94244 0.98142 0.99277 1.61658 1.08020 1.55629 1.01047 1.22437 0.86032 1.00468 1.03358 1.22420 1.00900 0.97476 0.91053 0.93703 0.90415 0.90755 0.89219 0.89156 0.94057 0.92588 0.95575 0.96357 0.79764 0.94020 0.75461 0.86495 0.84940 0.84862 0.84651 0.83891 0.94238 0.89813 0.92633 0.91821 0.89849 0.94383 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.73 9.48 71.98 0.68 -2.04 16 2 C 0.15 3.25 2.57 44.99 0.12 3.36 16 3 H 0.06 1.71 7.58 -2.39 -0.02 1.69 16 4 C -0.11 -2.39 4.75 30.59 0.15 -2.24 16 5 C -0.11 -3.52 5.21 30.59 0.16 -3.36 16 6 C 0.15 6.00 6.26 86.38 0.54 6.54 16 7 N -0.75 -39.24 5.60 -343.45 -1.92 -41.16 16 8 C -0.25 -14.17 9.99 84.03 0.84 -13.34 16 9 H 0.08 4.12 7.83 -2.91 -0.02 4.10 16 10 C -0.08 -4.44 5.50 84.86 0.47 -3.97 16 11 N -0.97 -60.27 13.06 21.65 0.28 -59.99 16 12 Si 0.97 46.36 29.55 68.60 2.03 48.39 16 13 H -0.28 -12.76 7.11 99.48 0.71 -12.05 16 14 H -0.30 -14.12 7.11 99.48 0.71 -13.41 16 15 H -0.28 -12.47 7.11 99.48 0.71 -11.76 16 16 N -0.71 -15.37 4.53 -442.54 -2.00 -17.38 16 17 C 0.52 13.41 5.88 87.66 0.52 13.93 16 18 O -0.56 -18.63 15.21 -3.03 -0.05 -18.68 16 19 C 0.12 2.49 2.06 43.42 0.09 2.58 16 20 H 0.09 1.40 7.94 -2.39 -0.02 1.38 16 21 C -0.09 -2.14 3.64 -19.87 -0.07 -2.22 16 22 C -0.10 -2.57 8.38 22.27 0.19 -2.38 16 23 C -0.13 -3.37 10.05 22.27 0.22 -3.15 16 24 C -0.12 -2.99 10.05 22.27 0.22 -2.77 16 25 C -0.13 -3.04 10.05 22.27 0.22 -2.82 16 26 C -0.11 -2.43 9.67 22.27 0.22 -2.21 16 27 N -0.54 -11.12 4.14 -932.18 -3.86 -14.98 16 28 C 0.02 0.44 9.22 127.69 1.18 1.62 16 29 C 0.03 0.47 9.11 127.69 1.16 1.63 16 30 H 0.04 0.94 8.14 -2.39 -0.02 0.92 16 31 H 0.08 1.22 8.14 -2.38 -0.02 1.20 16 32 H 0.07 1.07 8.14 -2.39 -0.02 1.05 16 33 H 0.09 1.62 8.14 -2.39 -0.02 1.60 16 34 H 0.09 1.83 8.14 -2.39 -0.02 1.81 16 35 H 0.04 1.47 8.14 -2.39 -0.02 1.45 16 36 H 0.06 1.83 7.75 -2.38 -0.02 1.82 16 37 H 0.03 1.00 8.14 -2.39 -0.02 0.98 16 38 H 0.02 0.73 8.14 -2.39 -0.02 0.71 16 39 H 0.37 20.92 7.67 -92.71 -0.71 20.21 16 40 H 0.25 15.12 8.31 -92.71 -0.77 14.35 16 41 H 0.41 7.02 8.60 -92.71 -0.80 6.22 16 42 H 0.12 3.37 7.93 -2.91 -0.02 3.35 16 43 H 0.13 2.88 8.06 -2.91 -0.02 2.86 16 44 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 45 H 0.14 2.81 8.06 -2.91 -0.02 2.79 16 46 H 0.14 2.36 7.99 -2.91 -0.02 2.33 16 47 H 0.04 0.56 8.14 -2.38 -0.02 0.54 16 48 H 0.08 1.26 8.06 -2.39 -0.02 1.24 16 49 H 0.05 1.23 6.40 -2.39 -0.02 1.22 16 50 H 0.06 1.17 6.56 -2.38 -0.02 1.16 16 51 H 0.08 1.11 8.03 -2.39 -0.02 1.09 16 52 H 0.04 0.52 8.13 -2.38 -0.02 0.50 16 Total: -1.00 -73.20 421.51 0.75 -72.45 By element: Atomic # 1 Polarization: 42.79 SS G_CDS: -0.62 Total: 42.18 kcal Atomic # 6 Polarization: -17.72 SS G_CDS: 6.90 Total: -10.83 kcal Atomic # 7 Polarization: -126.00 SS G_CDS: -7.51 Total: -133.51 kcal Atomic # 8 Polarization: -18.63 SS G_CDS: -0.05 Total: -18.68 kcal Atomic # 14 Polarization: 46.36 SS G_CDS: 2.03 Total: 48.39 kcal Total: -73.20 0.75 -72.45 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001506951447.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.836 kcal (2) G-P(sol) polarization free energy of solvation -73.197 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.361 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.751 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.447 kcal (6) G-S(sol) free energy of system = (1) + (5) -21.611 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.46 seconds